#include <mitkSurfaceInterpolationController.h>

Inheritance diagram for mitk::SurfaceInterpolationController:

Collaboration diagram for mitk::SurfaceInterpolationController:

Classes
struct	ContourPositionInformation

Public Types
typedef std::vector< ContourPositionInformation >	ContourPositionInformationList

typedef std::vector< ContourPositionInformationList >	ContourPositionInformationVec2D

typedef std::map< mitk::Image *, ContourPositionInformationVec2D >	ContourListMap

Public Member Functions
	mitkClassMacroItkParent (SurfaceInterpolationController, itk::Object) static Pointer New()

Pointer	Clone () const

virtual double	GetDistanceImageSpacing ()

void	SetCurrentTimeStep (unsigned int ts)

unsigned int	GetCurrentTimeStep ()

void	AddNewContour (Surface::Pointer newContour)
	Adds a new extracted contour to the list. More...

bool	RemoveContour (ContourPositionInformation contourInfo)
	Removes the contour for a given plane for the current selected segmenation. More...

void	AddNewContours (std::vector< Surface::Pointer > newContours)
	Adds new extracted contours to the list. If one or more contours at a given position already exist they will be updated respectively. More...

const mitk::Surface *	GetContour (ContourPositionInformation contourInfo)
	Returns the contour for a given plane for the current selected segmenation. More...

unsigned int	GetNumberOfContours ()
	Returns the number of available contours for the current selected segmentation. More...

void	Interpolate ()

mitk::Surface::Pointer	GetInterpolationResult ()

void	SetMinSpacing (double minSpacing)

void	SetMaxSpacing (double maxSpacing)

void	SetDistanceImageVolume (unsigned int distImageVolume)

mitk::Image::Pointer	GetCurrentSegmentation ()
	Get the current selected segmentation for which the interpolation is performed. More...

Surface *	GetContoursAsSurface ()

void	SetDataStorage (DataStorage::Pointer ds)

void	SetCurrentSegmentationInterpolationList (mitk::Image::Pointer segmentation)

void	SetCurrentInterpolationSession (mitk::Image::Pointer currentSegmentationImage)

void	RemoveSegmentationFromContourList (mitk::Image *segmentation)

void	RemoveInterpolationSession (mitk::Image::Pointer segmentationImage)
	Remove interpolation session. More...

bool	ReplaceInterpolationSession (mitk::Image::Pointer oldSession, mitk::Image::Pointer newSession)

void	RemoveAllInterpolationSessions ()
	Removes all sessions. More...

void	ReinitializeInterpolation (mitk::Surface::Pointer contours)
	Reinitializes the interpolation using the provided contour data. More...

mitk::Image *	GetImage ()

double	EstimatePortionOfNeededMemory ()

unsigned int	GetNumberOfInterpolationSessions ()

Static Public Member Functions
static SurfaceInterpolationController *	GetInstance ()

Protected Member Functions
	SurfaceInterpolationController ()

	~SurfaceInterpolationController ()

template<typename TPixel , unsigned int VImageDimension>
void	GetImageBase (itk::Image< TPixel, VImageDimension > *input, itk::ImageBase< 3 >::Pointer &result)

Detailed Description

Definition at line 53 of file mitkSurfaceInterpolationController.h.

Member Typedef Documentation

typedef std::map<mitk::Image *, ContourPositionInformationVec2D> mitk::SurfaceInterpolationController::ContourListMap

Definition at line 71 of file mitkSurfaceInterpolationController.h.

typedef std::vector<ContourPositionInformation> mitk::SurfaceInterpolationController::ContourPositionInformationList

Definition at line 68 of file mitkSurfaceInterpolationController.h.

typedef std::vector<ContourPositionInformationList> mitk::SurfaceInterpolationController::ContourPositionInformationVec2D

Definition at line 69 of file mitkSurfaceInterpolationController.h.

Constructor & Destructor Documentation

mitk::SurfaceInterpolationController::SurfaceInterpolationController ( )

protected

Definition at line 80 of file mitkSurfaceInterpolationController.cpp.

References mitk::Surface::New(), mitk::New(), mitk::ComputeContourSetNormalsFilter::New(), mitk::ReduceContourSetFilter::New(), and mitk::CreateDistanceImageFromSurfaceFilter::New().

mitk::SurfaceInterpolationController::~SurfaceInterpolationController ( )

protected

Definition at line 106 of file mitkSurfaceInterpolationController.cpp.

Member Function Documentation

void mitk::SurfaceInterpolationController::AddNewContour ( Surface::Pointer newContour )

Adds a new extracted contour to the list.

Parameters

newContour the contour to be added. If a contour at that position already exists the related contour will be updated

Definition at line 128 of file mitkSurfaceInterpolationController.cpp.

References CreateContourPositionInformation().

Referenced by mitk::SegTool2D::UpdateSurfaceInterpolation().

void mitk::SurfaceInterpolationController::AddNewContours ( std::vector< Surface::Pointer > newContours )

Adds new extracted contours to the list. If one or more contours at a given position already exist they will be updated respectively.

Parameters

newContours the list of the contours

Definition at line 139 of file mitkSurfaceInterpolationController.cpp.

References CreateContourPositionInformation().

Referenced by mitk::SegTool2D::WriteBackSegmentationResult().

Pointer mitk::SurfaceInterpolationController::Clone ( ) const

double mitk::SurfaceInterpolationController::EstimatePortionOfNeededMemory ( )

Estimates the memory which is needed to build up the equationsystem for the interpolation.

Returns: The percentage of the real memory which will be used by the interpolation

Definition at line 376 of file mitkSurfaceInterpolationController.cpp.

References mitk::MemoryUtilities::GetTotalSizeOfPhysicalRam().

const mitk::Surface * mitk::SurfaceInterpolationController::GetContour ( ContourPositionInformation contourInfo )

Returns the contour for a given plane for the current selected segmenation.

Parameters

ontourInfo the contour which should be returned

Returns: the contour as an mitk::Surface. If no contour is available at the give position NULL is returned

Definition at line 227 of file mitkSurfaceInterpolationController.cpp.

References mitk::SurfaceInterpolationController::ContourPositionInformation::contour, ContoursCoplanar(), and mitk::BaseData::GetTimeSteps().

mitk::Surface * mitk::SurfaceInterpolationController::GetContoursAsSurface ( )

Definition at line 340 of file mitkSurfaceInterpolationController.cpp.

mitk::Image::Pointer mitk::SurfaceInterpolationController::GetCurrentSegmentation ( )

Get the current selected segmentation for which the interpolation is performed.

Returns: the current segmentation image

Definition at line 366 of file mitkSurfaceInterpolationController.cpp.

unsigned int mitk::SurfaceInterpolationController::GetCurrentTimeStep ( )

inline

Definition at line 88 of file mitkSurfaceInterpolationController.h.

virtual double mitk::SurfaceInterpolationController::GetDistanceImageSpacing ( )

virtual

mitk::Image * mitk::SurfaceInterpolationController::GetImage ( void )

Definition at line 371 of file mitkSurfaceInterpolationController.cpp.

template<typename TPixel , unsigned int VImageDimension>

void mitk::SurfaceInterpolationController::GetImageBase	(	itk::Image< TPixel, VImageDimension > *	input,
		itk::ImageBase< 3 >::Pointer &	result
	)

protected

Definition at line 391 of file mitkSurfaceInterpolationController.cpp.

mitk::SurfaceInterpolationController * mitk::SurfaceInterpolationController::GetInstance ( )

static

Definition at line 117 of file mitkSurfaceInterpolationController.cpp.

References mitk::New().

Referenced by QmitkSlicesInterpolator::OnReinit3DInterpolation(), mitk::SegTool2D::UpdateSurfaceInterpolation(), and mitk::SegTool2D::WriteBackSegmentationResult().

mitk::Surface::Pointer mitk::SurfaceInterpolationController::GetInterpolationResult ( )

Definition at line 335 of file mitkSurfaceInterpolationController.cpp.

unsigned int mitk::SurfaceInterpolationController::GetNumberOfContours ( )

Returns the number of available contours for the current selected segmentation.

Returns: the number of contours

Definition at line 250 of file mitkSurfaceInterpolationController.cpp.

unsigned int mitk::SurfaceInterpolationController::GetNumberOfInterpolationSessions ( )

Definition at line 385 of file mitkSurfaceInterpolationController.cpp.

void mitk::SurfaceInterpolationController::Interpolate ( )

Interpolates the 3D surface from the given extracted contours

Definition at line 266 of file mitkSurfaceInterpolationController.cpp.

References mitk::ProgressBar::AddStepsToDo(), mitk::ProgressBar::GetInstance(), mitk::ImageTimeSelector::New(), mitk::Surface::New(), mitk::New(), mitk::ImageToSurfaceFilter::New(), and mitk::ProgressBar::Progress().

mitk::SurfaceInterpolationController::mitkClassMacroItkParent	(	SurfaceInterpolationController	,
		itk::Object
	)

void mitk::SurfaceInterpolationController::ReinitializeInterpolation ( mitk::Surface::Pointer contours )

Reinitializes the interpolation using the provided contour data.

Parameters

contours a mitk::Surface which contains the contours as polys in the vtkPolyData

Definition at line 518 of file mitkSurfaceInterpolationController.cpp.

References mitk::SurfaceInterpolationController::ContourPositionInformation::contourNormal, mitk::SurfaceInterpolationController::ContourPositionInformation::contourPoint, ContoursCoplanar(), mitk::Surface::New(), mitk::New(), and ReinitializeInterpolation().

Referenced by QmitkSlicesInterpolator::OnReinit3DInterpolation(), and ReinitializeInterpolation().

void mitk::SurfaceInterpolationController::RemoveAllInterpolationSessions ( )

Removes all sessions.

Definition at line 502 of file mitkSurfaceInterpolationController.cpp.

bool mitk::SurfaceInterpolationController::RemoveContour ( ContourPositionInformation contourInfo )

Removes the contour for a given plane for the current selected segmenation.

Parameters

contourInfo the contour which should be removed

Returns: true if a contour was found and removed, false if no contour was found

Definition at line 199 of file mitkSurfaceInterpolationController.cpp.

References ContoursCoplanar().

Referenced by mitk::SegTool2D::UpdateSurfaceInterpolation().

void mitk::SurfaceInterpolationController::RemoveInterpolationSession ( mitk::Image::Pointer segmentationImage )

Remove interpolation session.

Parameters

segmentationImage the session to be removed

Definition at line 482 of file mitkSurfaceInterpolationController.cpp.

void mitk::SurfaceInterpolationController::RemoveSegmentationFromContourList ( mitk::Image * segmentation )

Removes the segmentation and all its contours from the list

Parameters

segmentation The segmentation to be removed

Deprecated:: (as of 2014_03)

Definition at line 477 of file mitkSurfaceInterpolationController.cpp.

bool mitk::SurfaceInterpolationController::ReplaceInterpolationSession	(	mitk::Image::Pointer	oldSession,
		mitk::Image::Pointer	newSession
	)

Replaces the current interpolation session with a new one. All contours form the old session will be applied to the new session. This only works if the two images have the geometry

Parameters

oldSession	the session which should be replaced
newSession	the new session which replaces the old one

Returns: true it the the replacement was successful, false if not (e.g. the image's geometry differs)

Definition at line 436 of file mitkSurfaceInterpolationController.cpp.

References mitk::eps, mitk::Equal(), mitk::ImageTimeSelector::New(), and mitk::New().

void mitk::SurfaceInterpolationController::SetCurrentInterpolationSession ( mitk::Image::Pointer currentSegmentationImage )

Sets the current list of contourpoints which is used for the surface interpolation

Parameters

segmentation The current selected segmentation

Definition at line 402 of file mitkSurfaceInterpolationController.cpp.

References mitk::New().

void mitk::SurfaceInterpolationController::SetCurrentSegmentationInterpolationList ( mitk::Image::Pointer segmentation )

Sets the current list of contourpoints which is used for the surface interpolation

Parameters

segmentation The current selected segmentation

Deprecated:: (as of 2014_03)

Definition at line 397 of file mitkSurfaceInterpolationController.cpp.

void mitk::SurfaceInterpolationController::SetCurrentTimeStep ( unsigned int ts )

inline

Definition at line 75 of file mitkSurfaceInterpolationController.h.

void mitk::SurfaceInterpolationController::SetDataStorage ( DataStorage::Pointer ds )

Definition at line 345 of file mitkSurfaceInterpolationController.cpp.

References m_DataStorage.

void mitk::SurfaceInterpolationController::SetDistanceImageVolume ( unsigned int distImageVolume )

Sets the volume i.e. the number of pixels that the distance image should have By evaluation we found out that 50.000 pixel delivers a good result

Definition at line 361 of file mitkSurfaceInterpolationController.cpp.

void mitk::SurfaceInterpolationController::SetMaxSpacing ( double maxSpacing )

Sets the minimum spacing of the current selected segmentation This is needed since the contour points we reduced before they are used to interpolate the surface

Definition at line 355 of file mitkSurfaceInterpolationController.cpp.

void mitk::SurfaceInterpolationController::SetMinSpacing ( double minSpacing )

Sets the minimum spacing of the current selected segmentation This is needed since the contour points we reduced before they are used to interpolate the surface

Definition at line 350 of file mitkSurfaceInterpolationController.cpp.

The documentation for this class was generated from the following files:

Classes

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation