mitk::StickModel< ScalarType > Class Template Reference

Generates the diffusion signal using an idealised cylinder with zero radius: e^(-bd(ng)²) More...

#include <mitkStickModel.h>

Inheritance diagram for mitk::StickModel< ScalarType >:

Collaboration diagram for mitk::StickModel< ScalarType >:

Public Types
typedef DiffusionSignalModel< ScalarType >::PixelType	PixelType
typedef DiffusionSignalModel< ScalarType >::GradientType	GradientType
typedef DiffusionSignalModel< ScalarType >::GradientListType	GradientListType
Public Types inherited from mitk::DiffusionSignalModel< ScalarType >
typedef itk::Image< double, 3 >	ItkDoubleImgType
typedef itk::VariableLengthVector< ScalarType >	PixelType
typedef itk::Vector< double, 3 >	GradientType
typedef std::vector< GradientType >	GradientListType
typedef itk::Statistics::MersenneTwisterRandomVariateGenerator	ItkRandGenType

Public Member Functions
	StickModel ()
template<class OtherType >
	StickModel (StickModel< OtherType > *model)
	~StickModel ()
PixelType	SimulateMeasurement ()
ScalarType	SimulateMeasurement (unsigned int dir)
void	SetBvalue (double bValue)
	b-value used to generate the artificial signal More...
double	GetBvalue ()
void	SetDiffusivity (double diffusivity)
	Scalar diffusion constant. More...
double	GetDiffusivity ()
void	SetFiberDirection (GradientType fiberDirection)
void	SetGradientList (GradientListType gradientList)
Public Member Functions inherited from mitk::DiffusionSignalModel< ScalarType >
	DiffusionSignalModel ()
	~DiffusionSignalModel ()
GradientType	GetFiberDirection ()
GradientListType	GetGradientList ()
GradientType	GetGradientDirection (int i)
void	SetT2 (double T2)
double	GetT2 ()
void	SetT1 (double T1)
double	GetT1 ()
void	SetVolumeFractionImage (ItkDoubleImgType::Pointer img)
ItkDoubleImgType::Pointer	GetVolumeFractionImage ()
void	SetRandomGenerator (ItkRandGenType::Pointer randgen)
ItkRandGenType::Pointer	GetRandomGenerator ()
void	SetSeed (int s)

Protected Attributes
double	m_Diffusivity
	Scalar diffusion constant. More...
double	m_BValue
	b-value used to generate the artificial signal More...
Protected Attributes inherited from mitk::DiffusionSignalModel< ScalarType >
GradientType	m_FiberDirection
	Needed to generate anisotropc signal to determin direction of anisotropy. More...
GradientListType	m_GradientList
	Diffusion gradient direction container. More...
double	m_T2
	Tissue specific transversal relaxation time. More...
double	m_T1
	Tissue specific longitudinal relaxation time. More...
ItkDoubleImgType::Pointer	m_VolumeFractionImage
	Tissue specific volume fraction for each voxel (only relevant for non fiber compartments) More...
ItkRandGenType::Pointer	m_RandGen
	Random number generator. More...

Additional Inherited Members
Public Attributes inherited from mitk::DiffusionSignalModel< ScalarType >
unsigned int	m_CompartmentId
	GUI flag. Which compartment is this model assigned to? More...

Detailed Description

template<class ScalarType = double>
class mitk::StickModel< ScalarType >

Generates the diffusion signal using an idealised cylinder with zero radius: e^(-bd(ng)²)

Definition at line 30 of file mitkStickModel.h.

Member Typedef Documentation

template<class ScalarType = double>

typedef DiffusionSignalModel< ScalarType >::GradientListType mitk::StickModel< ScalarType >::GradientListType

Definition at line 51 of file mitkStickModel.h.

template<class ScalarType = double>

typedef DiffusionSignalModel< ScalarType >::GradientType mitk::StickModel< ScalarType >::GradientType

Definition at line 50 of file mitkStickModel.h.

template<class ScalarType = double>

typedef DiffusionSignalModel< ScalarType >::PixelType mitk::StickModel< ScalarType >::PixelType

Definition at line 49 of file mitkStickModel.h.

Constructor & Destructor Documentation

template<class ScalarType >

StickModel::StickModel

(

)

Definition at line 23 of file mitkStickModel.cpp.

template<class ScalarType = double>

template<class OtherType >

mitk::StickModel< ScalarType >::StickModel ( StickModel< OtherType > *  model )

inline

Definition at line 35 of file mitkStickModel.h.

References mitk::StickModel< ScalarType >::GetBvalue(), mitk::StickModel< ScalarType >::GetDiffusivity(), mitk::DiffusionSignalModel< ScalarType >::GetFiberDirection(), mitk::DiffusionSignalModel< ScalarType >::GetGradientList(), mitk::DiffusionSignalModel< ScalarType >::GetRandomGenerator(), mitk::DiffusionSignalModel< ScalarType >::GetT2(), mitk::DiffusionSignalModel< ScalarType >::GetVolumeFractionImage(), mitk::StickModel< ScalarType >::m_BValue, mitk::DiffusionSignalModel< ScalarType >::m_CompartmentId, mitk::StickModel< ScalarType >::m_Diffusivity, mitk::DiffusionSignalModel< ScalarType >::m_FiberDirection, mitk::DiffusionSignalModel< ScalarType >::m_GradientList, mitk::DiffusionSignalModel< ScalarType >::m_RandGen, mitk::DiffusionSignalModel< ScalarType >::m_T2, and mitk::DiffusionSignalModel< ScalarType >::m_VolumeFractionImage.

template<class ScalarType >

StickModel::~StickModel

(

)

Definition at line 31 of file mitkStickModel.cpp.

Member Function Documentation

template<class ScalarType = double>

double mitk::StickModel< ScalarType >::GetBvalue ( )

inline

Definition at line 58 of file mitkStickModel.h.

References mitk::StickModel< ScalarType >::m_BValue.

Referenced by mitk::StickModel< ScalarType >::StickModel().

template<class ScalarType = double>

double mitk::StickModel< ScalarType >::GetDiffusivity ( )

inline

Definition at line 60 of file mitkStickModel.h.

References mitk::StickModel< ScalarType >::m_Diffusivity.

Referenced by mitk::FiberfoxParameters< ScalarType >::LoadParameters(), mitk::FiberfoxParameters< ScalarType >::SaveParameters(), and mitk::StickModel< ScalarType >::StickModel().

template<class ScalarType = double>

void mitk::StickModel< ScalarType >::SetBvalue ( double  bValue )

inline

b-value used to generate the artificial signal

Definition at line 57 of file mitkStickModel.h.

References mitk::StickModel< ScalarType >::m_BValue.

template<class ScalarType = double>

void mitk::StickModel< ScalarType >::SetDiffusivity ( double  diffusivity )

inline

Scalar diffusion constant.

Definition at line 59 of file mitkStickModel.h.

References mitk::StickModel< ScalarType >::m_Diffusivity.

Referenced by mitk::FiberfoxParameters< ScalarType >::LoadParameters().

template<class ScalarType = double>

void mitk::StickModel< ScalarType >::SetFiberDirection ( GradientType  fiberDirection )

inlinevirtual

Implements mitk::DiffusionSignalModel< ScalarType >.

Definition at line 62 of file mitkStickModel.h.

References mitk::DiffusionSignalModel< ScalarType >::m_FiberDirection.

template<class ScalarType = double>

void mitk::StickModel< ScalarType >::SetGradientList ( GradientListType  gradientList )

inlinevirtual

Implements mitk::DiffusionSignalModel< ScalarType >.

Definition at line 63 of file mitkStickModel.h.

References mitk::DiffusionSignalModel< ScalarType >::m_GradientList.

template<class ScalarType >

StickModel< ScalarType >::PixelType StickModel::SimulateMeasurement ( )

virtual

Actual signal generation

Implements mitk::DiffusionSignalModel< ScalarType >.

Definition at line 61 of file mitkStickModel.cpp.

template<class ScalarType >

ScalarType StickModel::SimulateMeasurement ( unsigned int  dir )

virtual

Implements mitk::DiffusionSignalModel< ScalarType >.

Definition at line 37 of file mitkStickModel.cpp.

Member Data Documentation

template<class ScalarType = double>

double mitk::StickModel< ScalarType >::m_BValue

protected

b-value used to generate the artificial signal

Definition at line 68 of file mitkStickModel.h.

Referenced by mitk::StickModel< ScalarType >::GetBvalue(), mitk::StickModel< ScalarType >::SetBvalue(), and mitk::StickModel< ScalarType >::StickModel().

template<class ScalarType = double>

double mitk::StickModel< ScalarType >::m_Diffusivity

protected

Scalar diffusion constant.

Definition at line 67 of file mitkStickModel.h.

Referenced by mitk::StickModel< ScalarType >::GetDiffusivity(), mitk::StickModel< ScalarType >::SetDiffusivity(), and mitk::StickModel< ScalarType >::StickModel().

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The documentation for this class was generated from the following files:

• mitkStickModel.h
• mitkStickModel.cpp