mitk::ProportionalTimeGeometry Class Reference

#include <mitkProportionalTimeGeometry.h>

Inheritance diagram for mitk::ProportionalTimeGeometry:

Collaboration diagram for mitk::ProportionalTimeGeometry:

Public Types
typedef ProportionalTimeGeometry	Self
typedef TimeGeometry	Superclass
typedef itk::SmartPointer< Self >	Pointer
typedef itk::SmartPointer< const Self >	ConstPointer
typedef ProportionalTimeGeometry	self
Public Types inherited from mitk::TimeGeometry
typedef TimeGeometry	Self
typedef itk::Object	Superclass
typedef itk::SmartPointer< Self >	Pointer
typedef itk::SmartPointer< const Self >	ConstPointer

Public Member Functions
virtual std::vector< std::string >	GetClassHierarchy () const override
virtual const char *	GetClassName () const
	ProportionalTimeGeometry ()
Pointer	Clone () const
virtual TimeStepType	CountTimeSteps () const override
	Returns the number of time steps. More...
virtual TimePointType	GetMinimumTimePoint () const override
	Returns the first time point for which the object is valid. More...
virtual TimePointType	GetMaximumTimePoint () const override
	Returns the last time point for which the object is valid. More...
virtual TimePointType	GetMinimumTimePoint (TimeStepType step) const override
	Returns the first time point for which the object is valid. More...
virtual TimePointType	GetMaximumTimePoint (TimeStepType step) const override
	Returns the last time point for which the object is valid. More...
virtual TimeBounds	GetTimeBounds () const override
	Get the time bounds (in ms) More...
virtual TimeBounds	GetTimeBounds (TimeStepType step) const override
	Get the time bounds for the given TimeStep (in ms) More...
virtual bool	IsValidTimePoint (TimePointType timePoint) const override
	Tests if a given time point is covered by this object. More...
virtual bool	IsValidTimeStep (TimeStepType timeStep) const override
	Test for the given time step if a geometry is availible. More...
virtual TimePointType	TimeStepToTimePoint (TimeStepType timeStep) const override
	Converts a time step to a time point. More...
virtual TimeStepType	TimePointToTimeStep (TimePointType timePoint) const override
	Converts a time point to the corresponding time step. More...
virtual BaseGeometry::Pointer	GetGeometryCloneForTimeStep (TimeStepType timeStep) const override
	Returns the geometry which corresponds to the given time step. More...
virtual BaseGeometry::Pointer	GetGeometryForTimePoint (TimePointType timePoint) const override
	Returns the geometry which corresponds to the given time point. More...
virtual BaseGeometry::Pointer	GetGeometryForTimeStep (TimeStepType timeStep) const override
	Returns the geometry which corresponds to the given time step. More...
virtual bool	IsValid () const override
	Tests if all necessary informations are set and the object is valid. More...
virtual void	Initialize () override
	Initilizes a new object with one time steps which contains an empty geometry. More...
virtual void	Expand (TimeStepType size) override
	Expands the time geometry to the given number of time steps. More...
virtual void	SetTimeStepGeometry (BaseGeometry *geometry, TimeStepType timeStep) override
	Sets the geometry for the given time step. More...
virtual void	ReplaceTimeStepGeometries (const BaseGeometry *geometry) override
	Replaces the geometry instances with clones of the passed geometry. More...
virtual itk::LightObject::Pointer	InternalClone () const override
	Makes a deep copy of the current object. More...
virtual TimePointType	GetFirstTimePoint () const
virtual void	SetFirstTimePoint (TimePointType _arg)
virtual TimePointType	GetStepDuration () const
virtual void	SetStepDuration (TimePointType _arg)
void	ClearAllGeometries ()
void	ReserveSpaceForGeometries (TimeStepType numberOfGeometries)
void	Initialize (const BaseGeometry *geometry, TimeStepType timeSteps)
	Initializes the TimeGeometry with equally time Step geometries. More...
void	Initialize (TimeStepType timeSteps)
	Initialize the TimeGeometry with empty BaseGeometry. More...
virtual void	PrintSelf (std::ostream &os, itk::Indent indent) const override
Public Member Functions inherited from mitk::TimeGeometry
Pointer	Clone () const
	itkCreateAnotherMacro (Self) virtual TimeStepType CountTimeSteps() const =0
	Returns the number of time steps. More...
Point3D	GetCornerPointInWorld (int id) const
	Get the position of the corner number id (in world coordinates) More...
Point3D	GetCornerPointInWorld (bool xFront=true, bool yFront=true, bool zFront=true) const
	Get the position of a corner (in world coordinates) More...
Point3D	GetCenterInWorld () const
	Get the center of the bounding-box in mm. More...
double	GetDiagonalLength2InWorld () const
	Get the squared length of the diagonal of the bounding-box in mm. More...
double	GetDiagonalLengthInWorld () const
	Get the length of the diagonal of the bounding-box in mm. More...
bool	IsWorldPointInside (const mitk::Point3D &p) const
	Test whether the point p (world coordinates in mm) is inside the bounding box. More...
void	UpdateBoundingBox ()
	Updates the bounding box to cover the area used in all time steps. More...
BoundingBox *	GetBoundingBoxInWorld () const
	Returns a bounding box that covers all time steps. More...
BoundingBox::BoundsArrayType	GetBoundsInWorld () const
	Returns the world bounds of the object that cover all time steps. More...
ScalarType	GetExtentInWorld (unsigned int direction) const
	Returns the Extend of the bounding in the given direction. More...
void	Update ()
	Updates the geometry. More...
virtual void	UpdateWithoutBoundingBox ()
	Updates everything except the Bounding box. More...
virtual void	ExecuteOperation (Operation *op) override
	Executes the given operation on all time steps. More...
Public Member Functions inherited from mitk::OperationActor
	itkTypeMacroNoParent (OperationActor) virtual ~OperationActor()

Static Public Member Functions
static const char *	GetStaticNameOfClass ()
static Pointer	New ()
Static Public Member Functions inherited from mitk::TimeGeometry
static const char *	GetStaticNameOfClass ()

Protected Member Functions
virtual	~ProportionalTimeGeometry ()
Protected Member Functions inherited from mitk::TimeGeometry
	TimeGeometry ()
virtual	~TimeGeometry ()

Protected Attributes
std::vector< BaseGeometry::Pointer >	m_GeometryVector
TimePointType	m_FirstTimePoint
TimePointType	m_StepDuration
Protected Attributes inherited from mitk::TimeGeometry
BoundingBox::Pointer	m_BoundingBox
	Contains a bounding box which includes all time steps. More...

Detailed Description

Definition at line 42 of file mitkProportionalTimeGeometry.h.

Member Typedef Documentation

typedef itk::SmartPointer<const Self> mitk::ProportionalTimeGeometry::ConstPointer

Definition at line 45 of file mitkProportionalTimeGeometry.h.

typedef itk::SmartPointer<Self> mitk::ProportionalTimeGeometry::Pointer

Definition at line 45 of file mitkProportionalTimeGeometry.h.

typedef ProportionalTimeGeometry mitk::ProportionalTimeGeometry::Self

Definition at line 45 of file mitkProportionalTimeGeometry.h.

typedef ProportionalTimeGeometry mitk::ProportionalTimeGeometry::self

Definition at line 48 of file mitkProportionalTimeGeometry.h.

typedef TimeGeometry mitk::ProportionalTimeGeometry::Superclass

Definition at line 45 of file mitkProportionalTimeGeometry.h.

Constructor & Destructor Documentation

mitk::ProportionalTimeGeometry::ProportionalTimeGeometry

(

)

Definition at line 19 of file mitkProportionalTimeGeometry.cpp.

mitk::ProportionalTimeGeometry::~ProportionalTimeGeometry ( )

protectedvirtual

Definition at line 23 of file mitkProportionalTimeGeometry.cpp.

Member Function Documentation

void mitk::ProportionalTimeGeometry::ClearAllGeometries

(

)

Definition at line 163 of file mitkProportionalTimeGeometry.cpp.

Pointer mitk::ProportionalTimeGeometry::Clone

(

)

const

mitk::TimeStepType mitk::ProportionalTimeGeometry::CountTimeSteps ( ) const

overridevirtual

Returns the number of time steps.

Returns the number of time steps for which geometries are saved. The number of time steps is also the upper bound of the time steps. The minimum time steps is always 0.

Definition at line 34 of file mitkProportionalTimeGeometry.cpp.

Referenced by mitk::ProportionalTimeGeometryToXML::ToXML().

void mitk::ProportionalTimeGeometry::Expand ( mitk::TimeStepType  size )

overridevirtual

Expands the time geometry to the given number of time steps.

Initializes the new time steps with empty geometries if no timesteps in the geometry so far. Otherwise fills the new times steps with clones of the first time step. Shrinking is not supported.

Implements mitk::TimeGeometry.

Definition at line 173 of file mitkProportionalTimeGeometry.cpp.

References clone(), and mitk::Geometry3D::New().

Referenced by mitk::DWIHeadMotionCorrectionFilter::GenerateData(), and Valid_ImageExpandedByTimestep_ReturnsTrue().

virtual std::vector<std::string> mitk::ProportionalTimeGeometry::GetClassHierarchy ( ) const

inlineoverridevirtual

Reimplemented from mitk::TimeGeometry.

Definition at line 45 of file mitkProportionalTimeGeometry.h.

virtual const char* mitk::ProportionalTimeGeometry::GetClassName ( ) const

virtual

Reimplemented from mitk::TimeGeometry.

virtual TimePointType mitk::ProportionalTimeGeometry::GetFirstTimePoint ( ) const

virtual

Referenced by mitk::ManualSegmentationToSurfaceFilter::GenerateData(), and mitk::ProportionalTimeGeometryToXML::ToXML().

mitk::BaseGeometry::Pointer mitk::ProportionalTimeGeometry::GetGeometryCloneForTimeStep ( TimeStepType  timeStep ) const

overridevirtual

Returns the geometry which corresponds to the given time step.

Returns a clone of the geometry which defines the given time step. If the given time step is invalid an null-pointer is returned.

Implements mitk::TimeGeometry.

Definition at line 148 of file mitkProportionalTimeGeometry.cpp.

mitk::BaseGeometry::Pointer mitk::ProportionalTimeGeometry::GetGeometryForTimePoint ( TimePointType  timePoint ) const

overridevirtual

Returns the geometry which corresponds to the given time point.

Returns the geometry which defines the given time point. If the given time point is invalid an null-pointer is returned.

If the returned geometry is changed this will affect the saved geometry.

Implements mitk::TimeGeometry.

Definition at line 135 of file mitkProportionalTimeGeometry.cpp.

mitk::BaseGeometry::Pointer mitk::ProportionalTimeGeometry::GetGeometryForTimeStep ( TimeStepType  timeStep ) const

overridevirtual

Returns the geometry which corresponds to the given time step.

Returns the geometry which defines the given time step. If the given time step is invalid an null-pointer is returned.

If the returned geometry is changed this will affect the saved geometry.

Implements mitk::TimeGeometry.

Definition at line 123 of file mitkProportionalTimeGeometry.cpp.

Referenced by mitk::DWIHeadMotionCorrectionFilter::GenerateData(), mitk::ProportionalTimeGeometryToXML::ToXML(), and Valid_ImageExpandedByTimestep_ReturnsTrue().

mitk::TimePointType mitk::ProportionalTimeGeometry::GetMaximumTimePoint ( ) const

overridevirtual

Returns the last time point for which the object is valid.

Gives the last time point for which a valid geometrie is saved in this time geometry. The time point is given in ms.

Implements mitk::TimeGeometry.

Definition at line 44 of file mitkProportionalTimeGeometry.cpp.

References max().

mitk::TimePointType mitk::ProportionalTimeGeometry::GetMaximumTimePoint ( TimeStepType  step ) const

overridevirtual

Returns the last time point for which the object is valid.

Gives the last time point for the Geometry specified by the given TimeStep. The time point is given in ms.

Implements mitk::TimeGeometry.

Definition at line 76 of file mitkProportionalTimeGeometry.cpp.

mitk::TimePointType mitk::ProportionalTimeGeometry::GetMinimumTimePoint ( ) const

overridevirtual

Returns the first time point for which the object is valid.

Returns the first valid time point for this geometry. If only one time steps available it usually goes from -max to +max. The time point is given in ms.

Implements mitk::TimeGeometry.

Definition at line 39 of file mitkProportionalTimeGeometry.cpp.

mitk::TimePointType mitk::ProportionalTimeGeometry::GetMinimumTimePoint ( TimeStepType  step ) const

overridevirtual

Returns the first time point for which the object is valid.

Returns the first valid time point for the given TimeStep. The time point is given in ms.

Implements mitk::TimeGeometry.

Definition at line 60 of file mitkProportionalTimeGeometry.cpp.

References max().

static const char* mitk::ProportionalTimeGeometry::GetStaticNameOfClass ( )

inlinestatic

Definition at line 45 of file mitkProportionalTimeGeometry.h.

Referenced by mitk::ItkImageIO::Read().

virtual TimePointType mitk::ProportionalTimeGeometry::GetStepDuration ( ) const

virtual

Referenced by mitk::ManualSegmentationToSurfaceFilter::GenerateData(), and mitk::ProportionalTimeGeometryToXML::ToXML().

mitk::TimeBounds mitk::ProportionalTimeGeometry::GetTimeBounds ( ) const

overridevirtual

Get the time bounds (in ms)

Implements mitk::TimeGeometry.

Definition at line 52 of file mitkProportionalTimeGeometry.cpp.

mitk::TimeBounds mitk::ProportionalTimeGeometry::GetTimeBounds ( TimeStepType  step ) const

overridevirtual

Get the time bounds for the given TimeStep (in ms)

Implements mitk::TimeGeometry.

Definition at line 84 of file mitkProportionalTimeGeometry.cpp.

void mitk::ProportionalTimeGeometry::Initialize ( )

overridevirtual

Initilizes a new object with one time steps which contains an empty geometry.

Reimplemented from mitk::TimeGeometry.

Definition at line 27 of file mitkProportionalTimeGeometry.cpp.

Referenced by mitk::AutoCropImageFilter::GenerateOutputInformation().

void mitk::ProportionalTimeGeometry::Initialize	(	const BaseGeometry *	geometry,
		TimeStepType	timeSteps
	)

Initializes the TimeGeometry with equally time Step geometries.

Saves a copy for each time step.

Definition at line 229 of file mitkProportionalTimeGeometry.cpp.

References mitk::BaseGeometry::Clone(), max(), MITK_INFO, and Update().

void mitk::ProportionalTimeGeometry::Initialize

(

TimeStepType

timeSteps

)

Initialize the TimeGeometry with empty BaseGeometry.

Definition at line 256 of file mitkProportionalTimeGeometry.cpp.

References mitk::Geometry3D::New().

itk::LightObject::Pointer mitk::ProportionalTimeGeometry::InternalClone ( ) const

overridevirtual

Makes a deep copy of the current object.

Reimplemented from mitk::TimeGeometry.

Definition at line 204 of file mitkProportionalTimeGeometry.cpp.

bool mitk::ProportionalTimeGeometry::IsValid ( ) const

overridevirtual

Tests if all necessary informations are set and the object is valid.

Implements mitk::TimeGeometry.

Definition at line 155 of file mitkProportionalTimeGeometry.cpp.

bool mitk::ProportionalTimeGeometry::IsValidTimePoint ( TimePointType  timePoint ) const

overridevirtual

Tests if a given time point is covered by this object.

Returns true if a geometry can be returned for the given time point and falls if not. The time point must be given in ms.

Implements mitk::TimeGeometry.

Definition at line 92 of file mitkProportionalTimeGeometry.cpp.

bool mitk::ProportionalTimeGeometry::IsValidTimeStep ( TimeStepType  timeStep ) const

overridevirtual

Test for the given time step if a geometry is availible.

Returns true if a geometry is defined for the given time step. Otherwise false is returned. The time step is defined as positiv number.

Implements mitk::TimeGeometry.

Definition at line 97 of file mitkProportionalTimeGeometry.cpp.

static Pointer mitk::ProportionalTimeGeometry::New ( )

static

Referenced by mitk::BaseData::BaseData(), mitk::BoundingObjectGroup::BoundingObjectGroup(), mitk::ExtrudedContour::BuildGeometry(), mitk::DataStorage::ComputeBoundingGeometry3D(), mitk::ContourSet::ContourSet(), mitk::ExtrudedContour::ExtrudedContour(), mitk::ProportionalTimeGeometryToXML::FromXML(), mitk::ItkImageFileReader::GenerateData(), mitk::ContourSet::Initialize(), mitk::Contour::Initialize(), mitk::Image::Initialize(), mitk::Image::InitializeByItk(), mitk::PlanarFigure::InitializeTimeGeometry(), mitk::RenderingManager::InitializeView(), mitk::RenderingManager::InitializeViews(), QmitkSliceWidget::InitWidget(), mitkBaseDataTest(), mitk::PlaneFit::PlaneFit(), mitk::ItkImageIO::Read(), mitk::LabelSetImageIO::Read(), mitk::PointSetReaderService::Read(), mitk::SlicedData::SetGeometry(), mitk::BaseData::SetGeometry(), mitk::PlaneGeometryData::SetPlaneGeometry(), mitk::SliceNavigationController::Update(), mitk::BoundingObjectGroup::UpdateOutputInformation(), and mitk::ContourSet::UpdateOutputInformation().

void mitk::ProportionalTimeGeometry::PrintSelf ( std::ostream &  os, itk::Indent  indent  ) const

overridevirtual

Reimplemented from mitk::TimeGeometry.

Definition at line 265 of file mitkProportionalTimeGeometry.cpp.

void mitk::ProportionalTimeGeometry::ReplaceTimeStepGeometries ( const BaseGeometry *  geometry )

overridevirtual

Replaces the geometry instances with clones of the passed geometry.

Replaces the geometries of all time steps with clones of the passed geometry. Replacement strategy depends on the implementation of TimeGeometry sub class.

Remarks

The time points itself stays untouched. Use this method if you want to change the spatial properties of a TimeGeometry and preserve the time "grid".

Implements mitk::TimeGeometry.

Definition at line 220 of file mitkProportionalTimeGeometry.cpp.

References mitk::BaseGeometry::Clone().

void mitk::ProportionalTimeGeometry::ReserveSpaceForGeometries

(

TimeStepType

numberOfGeometries

)

Definition at line 168 of file mitkProportionalTimeGeometry.cpp.

virtual void mitk::ProportionalTimeGeometry::SetFirstTimePoint ( TimePointType  _arg )

virtual

Referenced by mitk::ManualSegmentationToSurfaceFilter::GenerateData().

virtual void mitk::ProportionalTimeGeometry::SetStepDuration ( TimePointType  _arg )

virtual

Referenced by mitk::ManualSegmentationToSurfaceFilter::GenerateData().

void mitk::ProportionalTimeGeometry::SetTimeStepGeometry ( BaseGeometry *  geometry, TimeStepType  timeStep  )

overridevirtual

Sets the geometry for the given time step.

This method does not afflict other time steps, since the geometry for each time step is saved individually.

Implements mitk::TimeGeometry.

Definition at line 194 of file mitkProportionalTimeGeometry.cpp.

Referenced by mitk::DWIHeadMotionCorrectionFilter::GenerateData(), and Valid_ImageExpandedByTimestep_ReturnsTrue().

mitk::TimeStepType mitk::ProportionalTimeGeometry::TimePointToTimeStep ( TimePointType  timePoint ) const

overridevirtual

Converts a time point to the corresponding time step.

Converts a time point to a time step in a way that the new time step indicates the same geometry as the time point. If a negativ invalid time point is given always time step 0 is returned. If an positiv invalid time step is given an invalid time step will be returned.

Implements mitk::TimeGeometry.

Definition at line 115 of file mitkProportionalTimeGeometry.cpp.

mitk::TimePointType mitk::ProportionalTimeGeometry::TimeStepToTimePoint ( TimeStepType  timeStep ) const

overridevirtual

Converts a time step to a time point.

Converts a time step to a time point in a way that the new time point indicates the same geometry as the time step. If the original time steps does not point to a valid geometry, a time point is calculated that also does not point to a valid geometry, but no exception is raised.

Implements mitk::TimeGeometry.

Definition at line 102 of file mitkProportionalTimeGeometry.cpp.

References max(), and min().

Member Data Documentation

TimePointType mitk::ProportionalTimeGeometry::m_FirstTimePoint

protected

Definition at line 235 of file mitkProportionalTimeGeometry.h.

std::vector<BaseGeometry::Pointer> mitk::ProportionalTimeGeometry::m_GeometryVector

protected

Definition at line 234 of file mitkProportionalTimeGeometry.h.

TimePointType mitk::ProportionalTimeGeometry::m_StepDuration

protected

Definition at line 236 of file mitkProportionalTimeGeometry.h.

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The documentation for this class was generated from the following files:

• mitkProportionalTimeGeometry.h
• mitkProportionalTimeGeometry.cpp