mitk::BallModel< ScalarType > Class Template Reference

Generates direction independent diffusion measurement employing a scalar diffusion constant d: e^(-bd) More...

#include <mitkBallModel.h>

Inheritance diagram for mitk::BallModel< ScalarType >:

Collaboration diagram for mitk::BallModel< ScalarType >:

Public Types
typedef DiffusionSignalModel< ScalarType >::PixelType	PixelType
typedef DiffusionSignalModel< ScalarType >::GradientType	GradientType
typedef DiffusionSignalModel< ScalarType >::GradientListType	GradientListType
Public Types inherited from mitk::DiffusionSignalModel< ScalarType >
typedef itk::Image< double, 3 >	ItkDoubleImgType
typedef itk::VariableLengthVector< ScalarType >	PixelType
typedef itk::Vector< double, 3 >	GradientType
typedef std::vector< GradientType >	GradientListType
typedef itk::Statistics::MersenneTwisterRandomVariateGenerator	ItkRandGenType

Public Member Functions
	BallModel ()
template<class OtherType >
	BallModel (BallModel< OtherType > *model)
	~BallModel ()
PixelType	SimulateMeasurement ()
ScalarType	SimulateMeasurement (unsigned int dir)
void	SetDiffusivity (double D)
double	GetDiffusivity ()
void	SetBvalue (double bValue)
	b-value used to generate the artificial signal More...
double	GetBvalue ()
void	SetFiberDirection (GradientType fiberDirection)
void	SetGradientList (GradientListType gradientList)
Public Member Functions inherited from mitk::DiffusionSignalModel< ScalarType >
	DiffusionSignalModel ()
	~DiffusionSignalModel ()
GradientType	GetFiberDirection ()
GradientListType	GetGradientList ()
GradientType	GetGradientDirection (int i)
void	SetT2 (double T2)
double	GetT2 ()
void	SetT1 (double T1)
double	GetT1 ()
void	SetVolumeFractionImage (ItkDoubleImgType::Pointer img)
ItkDoubleImgType::Pointer	GetVolumeFractionImage ()
void	SetRandomGenerator (ItkRandGenType::Pointer randgen)
ItkRandGenType::Pointer	GetRandomGenerator ()
void	SetSeed (int s)

Protected Attributes
double	m_Diffusivity
	Scalar diffusion constant. More...
double	m_BValue
	b-value used to generate the artificial signal More...
Protected Attributes inherited from mitk::DiffusionSignalModel< ScalarType >
GradientType	m_FiberDirection
	Needed to generate anisotropc signal to determin direction of anisotropy. More...
GradientListType	m_GradientList
	Diffusion gradient direction container. More...
double	m_T2
	Tissue specific transversal relaxation time. More...
double	m_T1
	Tissue specific longitudinal relaxation time. More...
ItkDoubleImgType::Pointer	m_VolumeFractionImage
	Tissue specific volume fraction for each voxel (only relevant for non fiber compartments) More...
ItkRandGenType::Pointer	m_RandGen
	Random number generator. More...

Additional Inherited Members
Public Attributes inherited from mitk::DiffusionSignalModel< ScalarType >
unsigned int	m_CompartmentId
	GUI flag. Which compartment is this model assigned to? More...

Detailed Description

template<class ScalarType = double>
class mitk::BallModel< ScalarType >

Generates direction independent diffusion measurement employing a scalar diffusion constant d: e^(-bd)

Definition at line 30 of file mitkBallModel.h.

Member Typedef Documentation

template<class ScalarType = double>

typedef DiffusionSignalModel< ScalarType >::GradientListType mitk::BallModel< ScalarType >::GradientListType

Definition at line 51 of file mitkBallModel.h.

template<class ScalarType = double>

typedef DiffusionSignalModel< ScalarType >::GradientType mitk::BallModel< ScalarType >::GradientType

Definition at line 50 of file mitkBallModel.h.

template<class ScalarType = double>

typedef DiffusionSignalModel< ScalarType >::PixelType mitk::BallModel< ScalarType >::PixelType

Definition at line 49 of file mitkBallModel.h.

Constructor & Destructor Documentation

template<class ScalarType >

BallModel::BallModel

(

)

Definition at line 23 of file mitkBallModel.cpp.

template<class ScalarType = double>

template<class OtherType >

mitk::BallModel< ScalarType >::BallModel ( BallModel< OtherType > *  model )

inline

Definition at line 35 of file mitkBallModel.h.

References mitk::BallModel< ScalarType >::GetBvalue(), mitk::BallModel< ScalarType >::GetDiffusivity(), mitk::DiffusionSignalModel< ScalarType >::GetFiberDirection(), mitk::DiffusionSignalModel< ScalarType >::GetGradientList(), mitk::DiffusionSignalModel< ScalarType >::GetRandomGenerator(), mitk::DiffusionSignalModel< ScalarType >::GetT2(), mitk::DiffusionSignalModel< ScalarType >::GetVolumeFractionImage(), mitk::BallModel< ScalarType >::m_BValue, mitk::DiffusionSignalModel< ScalarType >::m_CompartmentId, mitk::BallModel< ScalarType >::m_Diffusivity, mitk::DiffusionSignalModel< ScalarType >::m_FiberDirection, mitk::DiffusionSignalModel< ScalarType >::m_GradientList, mitk::DiffusionSignalModel< ScalarType >::m_RandGen, mitk::DiffusionSignalModel< ScalarType >::m_T2, and mitk::DiffusionSignalModel< ScalarType >::m_VolumeFractionImage.

template<class ScalarType >

BallModel::~BallModel

(

)

Definition at line 31 of file mitkBallModel.cpp.

Member Function Documentation

template<class ScalarType = double>

double mitk::BallModel< ScalarType >::GetBvalue ( )

inline

Definition at line 61 of file mitkBallModel.h.

References mitk::BallModel< ScalarType >::m_BValue.

Referenced by mitk::BallModel< ScalarType >::BallModel().

template<class ScalarType = double>

double mitk::BallModel< ScalarType >::GetDiffusivity ( )

inline

Definition at line 59 of file mitkBallModel.h.

References mitk::BallModel< ScalarType >::m_Diffusivity.

Referenced by mitk::BallModel< ScalarType >::BallModel(), mitk::FiberfoxParameters< ScalarType >::LoadParameters(), and mitk::FiberfoxParameters< ScalarType >::SaveParameters().

template<class ScalarType = double>

void mitk::BallModel< ScalarType >::SetBvalue ( double  bValue )

inline

b-value used to generate the artificial signal

Definition at line 60 of file mitkBallModel.h.

References mitk::BallModel< ScalarType >::m_BValue.

template<class ScalarType = double>

void mitk::BallModel< ScalarType >::SetDiffusivity ( double  D )

inline

Definition at line 58 of file mitkBallModel.h.

References mitk::BallModel< ScalarType >::m_Diffusivity.

Referenced by mitk::FiberfoxParameters< ScalarType >::LoadParameters().

template<class ScalarType = double>

void mitk::BallModel< ScalarType >::SetFiberDirection ( GradientType  fiberDirection )

inlinevirtual

Implements mitk::DiffusionSignalModel< ScalarType >.

Definition at line 63 of file mitkBallModel.h.

References mitk::DiffusionSignalModel< ScalarType >::m_FiberDirection.

template<class ScalarType = double>

void mitk::BallModel< ScalarType >::SetGradientList ( GradientListType  gradientList )

inlinevirtual

Implements mitk::DiffusionSignalModel< ScalarType >.

Definition at line 64 of file mitkBallModel.h.

References mitk::DiffusionSignalModel< ScalarType >::m_GradientList.

template<class ScalarType >

BallModel< ScalarType >::PixelType BallModel::SimulateMeasurement ( )

virtual

Actual signal generation

Implements mitk::DiffusionSignalModel< ScalarType >.

Definition at line 56 of file mitkBallModel.cpp.

template<class ScalarType >

ScalarType BallModel::SimulateMeasurement ( unsigned int  dir )

virtual

Implements mitk::DiffusionSignalModel< ScalarType >.

Definition at line 37 of file mitkBallModel.cpp.

Member Data Documentation

template<class ScalarType = double>

double mitk::BallModel< ScalarType >::m_BValue

protected

b-value used to generate the artificial signal

Definition at line 69 of file mitkBallModel.h.

Referenced by mitk::BallModel< ScalarType >::BallModel(), mitk::BallModel< ScalarType >::GetBvalue(), and mitk::BallModel< ScalarType >::SetBvalue().

template<class ScalarType = double>

double mitk::BallModel< ScalarType >::m_Diffusivity

protected

Scalar diffusion constant.

Definition at line 68 of file mitkBallModel.h.

Referenced by mitk::BallModel< ScalarType >::BallModel(), mitk::BallModel< ScalarType >::GetDiffusivity(), and mitk::BallModel< ScalarType >::SetDiffusivity().

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The documentation for this class was generated from the following files:

• mitkBallModel.h
• mitkBallModel.cpp