#include <mitkAbstractClassifier.h>

Inheritance diagram for mitk::AbstractClassifier:

Collaboration diagram for mitk::AbstractClassifier:

Public Member Functions
Eigen::MatrixXi &	GetLabels ()
	GetPointWiseWeightCopy. More...

virtual bool	SupportsPointWiseWeight ()=0
	SupportsPointWiseWeight. More...

virtual Eigen::MatrixXd &	GetPointWiseWeight ()
	GetPointWiseWeightCopy. More...

virtual void	SetPointWiseWeight (const Eigen::MatrixXd &W)
	SetPointWiseWeight. More...

virtual void	UsePointWiseWeight (bool value)
	UsePointWiseWeight. More...

virtual bool	IsUsingPointWiseWeight ()
	IsUsingPointWiseWeight. More...

virtual bool	SupportsPointWiseProbability ()=0
	SupportsPointWiseProbability. More...

virtual Eigen::MatrixXd &	GetPointWiseProbabilities ()
	GetPointWiseWeightCopy. More...

virtual void	UsePointWiseProbability (bool value)
	UsePointWiseProbabilities. More...

virtual bool	IsUsingPointWiseProbability ()
	IsUsingPointWiseProbabilities. More...

void	SetNthItems (const char *val, unsigned int idx)

std::string	GetNthItems (unsigned int idx) const

void	SetItemList (std::vector< std::string >)

std::vector< std::string >	GetItemList () const

virtual void	SetRequestedRegionToLargestPossibleRegion ()
	Set the RequestedRegion to the LargestPossibleRegion. More...

virtual bool	RequestedRegionIsOutsideOfTheBufferedRegion ()
	Determine whether the RequestedRegion is outside of the BufferedRegion. More...

virtual bool	VerifyRequestedRegion ()
	Verify that the RequestedRegion is within the LargestPossibleRegion. More...

virtual void	SetRequestedRegion (const itk::DataObject *)
	Set the requested region from this data object to match the requested region of the data object passed in as a parameter. More...

virtual bool	IsEmpty () const override
	Check whether object contains data (at least at one point in time), e.g., a set of points may be empty. More...

Public Member Functions inherited from mitk::BaseData
virtual std::vector< std::string >	GetClassHierarchy () const

virtual const char *	GetClassName () const

const mitk::TimeGeometry *	GetTimeGeometry () const
	Return the TimeGeometry of the data as const pointer. More...

const mitk::TimeGeometry *	GetTimeSlicedGeometry () const
	Return the TimeGeometry of the data as const pointer. More...

mitk::TimeGeometry *	GetTimeGeometry ()
	Return the TimeGeometry of the data as pointer. More...

const mitk::TimeGeometry *	GetUpdatedTimeGeometry ()
	Return the TimeGeometry of the data. More...

const mitk::TimeGeometry *	GetUpdatedTimeSliceGeometry ()
	Return the TimeGeometry of the data. More...

virtual void	Expand (unsigned int timeSteps)
	Expands the TimeGeometry to a number of TimeSteps. More...

const mitk::BaseGeometry *	GetUpdatedGeometry (int t=0)
	Return the BaseGeometry of the data at time t. More...

mitk::BaseGeometry *	GetGeometry (int t=0) const
	Return the geometry, which is a TimeGeometry, of the data as non-const pointer. More...

void	UpdateOutputInformation () override
	Update the information for this BaseData (the geometry in particular) so that it can be used as an output of a BaseProcess. More...

void	CopyInformation (const itk::DataObject *data) override
	Copy information from the specified data set. More...

virtual bool	IsInitialized () const
	Check whether the data has been initialized, i.e., at least the Geometry and other header data has been set. More...

virtual void	Clear ()
	Calls ClearData() and InitializeEmpty();. More...

virtual bool	IsEmptyTimeStep (unsigned int t) const
	Check whether object contains data (at a specified time), e.g., a set of points may be empty. More...

void	ExecuteOperation (Operation *operation) override
	overwrite if the Data can be called by an Interactor (StateMachine). More...

virtual void	SetGeometry (BaseGeometry *aGeometry3D)
	Set the BaseGeometry of the data, which will be referenced (not copied!). Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry which saves the given BaseGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...

virtual void	SetTimeGeometry (TimeGeometry *geometry)
	Set the TimeGeometry of the data, which will be referenced (not copied!). More...

virtual void	SetClonedGeometry (const BaseGeometry *aGeometry3D)
	Set a clone of the provided TimeGeometry as TimeGeometry of the data. Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...

virtual void	SetClonedTimeGeometry (const TimeGeometry *geometry)
	Set a clone of the provided TimeGeometry as TimeGeometry of the data. More...

virtual void	SetClonedGeometry (const BaseGeometry *aGeometry3D, unsigned int time)
	Set a clone of the provided geometry as BaseGeometry of a given time step. More...

mitk::PropertyList::Pointer	GetPropertyList () const
	Get the data's property list. More...

void	SetPropertyList (PropertyList *propertyList)
	Set the data's property list. More...

mitk::BaseProperty::Pointer	GetProperty (const char *propertyKey) const
	Get the property (instance of BaseProperty) with key propertyKey from the PropertyList, and set it to this, respectively;. More...

void	SetProperty (const char propertyKey, BaseProperty property)

virtual void	SetOrigin (const Point3D &origin)
	Convenience method for setting the origin of the BaseGeometry instances of all time steps. More...

itk::SmartPointer< mitk::BaseDataSource >	GetSource () const
	Get the process object that generated this data object. More...

unsigned int	GetTimeSteps () const
	Get the number of time steps from the TimeGeometry As the base data has not a data vector given by itself, the number of time steps is defined over the time sliced geometry. In sub classes, a better implementation could be over the length of the data vector. More...

virtual unsigned long	GetMTime () const override
	Get the modified time of the last change of the contents this data object or its geometry. More...

virtual void	Graft (const DataObject *) override

Public Member Functions inherited from mitk::OperationActor
	itkTypeMacroNoParent (OperationActor) virtual ~OperationActor()

Protected Attributes
Eigen::MatrixXi	m_OutLabel

Eigen::MatrixXd	m_PointWiseWeight

bool	m_IsUsingPointWiseWeight

Eigen::MatrixXd	m_OutProbability

bool	m_IsUsingPointWiseProbability

Protected Attributes inherited from mitk::BaseData
bool	m_LastRequestedRegionWasOutsideOfTheBufferedRegion

unsigned int	m_SourceOutputIndexDuplicate

bool	m_Initialized

Additional Inherited Members
Public Types inherited from mitk::BaseData
typedef BaseData	Self

typedef itk::DataObject	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

Static Public Member Functions inherited from mitk::BaseData
static const char *	GetStaticNameOfClass ()

Protected Member Functions inherited from mitk::BaseData
	BaseData ()

	BaseData (const BaseData &other)

	~BaseData ()

virtual void	InitializeTimeGeometry (unsigned int timeSteps=1)
	Initialize the TimeGeometry for a number of time steps. The TimeGeometry is initialized empty and evenly timed. In many cases it will be necessary to overwrite this in sub-classes. More...

virtual void	InitializeTimeSlicedGeometry (unsigned int timeSteps=1)
	Initialize the TimeGeometry for a number of time steps. The TimeGeometry is initialized empty and evenly timed. In many cases it will be necessary to overwrite this in sub-classes. More...

virtual void	ClearData ()
	reset to non-initialized state, release memory More...

virtual void	InitializeEmpty ()
	Pure virtual; Must be used in subclasses to get a data object to a valid state. Should at least create one empty object and call Superclass::InitializeTimeGeometry() to ensure an existing valid geometry. More...

virtual void	PrintSelf (std::ostream &os, itk::Indent indent) const override

Detailed Description

Definition at line 36 of file mitkAbstractClassifier.h.

Member Function Documentation

std::vector< std::string > mitk::AbstractClassifier::GetItemList ( ) const

Definition at line 42 of file mitkAbstractClassifier.cpp.

Eigen::MatrixXi& mitk::AbstractClassifier::GetLabels ( )

inline

GetPointWiseWeightCopy.

Returns: return label matrix of shape = [n_samples , 1]

Definition at line 60 of file mitkAbstractClassifier.h.

std::string mitk::AbstractClassifier::GetNthItems ( unsigned int idx ) const

Definition at line 27 of file mitkAbstractClassifier.cpp.

virtual Eigen::MatrixXd& mitk::AbstractClassifier::GetPointWiseProbabilities ( )

inlinevirtual

GetPointWiseWeightCopy.

Returns: return probability matrix

Definition at line 135 of file mitkAbstractClassifier.h.

virtual Eigen::MatrixXd& mitk::AbstractClassifier::GetPointWiseWeight ( )

inlinevirtual

GetPointWiseWeightCopy.

Returns: Create and return a copy of W

Definition at line 84 of file mitkAbstractClassifier.h.

virtual bool mitk::AbstractClassifier::IsEmpty ( ) const

inlineoverridevirtual

Check whether object contains data (at least at one point in time), e.g., a set of points may be empty.

Warning: Returns IsInitialized()==false by default for compatibility reasons. Override in sub-classes that support distinction between empty/non-empty state.

Reimplemented from mitk::BaseData.

Definition at line 184 of file mitkAbstractClassifier.h.

virtual bool mitk::AbstractClassifier::IsUsingPointWiseProbability ( )

inlinevirtual

IsUsingPointWiseProbabilities.

Returns

Definition at line 153 of file mitkAbstractClassifier.h.

virtual bool mitk::AbstractClassifier::IsUsingPointWiseWeight ( )

inlinevirtual

IsUsingPointWiseWeight.

Returns: true if pointewise weighting is enabled.

Definition at line 111 of file mitkAbstractClassifier.h.

virtual bool mitk::AbstractClassifier::RequestedRegionIsOutsideOfTheBufferedRegion ( )

inlinevirtual

Determine whether the RequestedRegion is outside of the BufferedRegion.

This method returns true if the RequestedRegion is outside the BufferedRegion (true if at least one pixel is outside). This is used by the pipeline mechanism to determine whether a filter needs to re-execute in order to satisfy the current request. If the current RequestedRegion is already inside the BufferedRegion from the previous execution (and the current filter is up to date), then a given filter does not need to re-execute

Implements mitk::BaseData.

Definition at line 177 of file mitkAbstractClassifier.h.

void mitk::AbstractClassifier::SetItemList ( std::vector< std::string > list )

Definition at line 36 of file mitkAbstractClassifier.cpp.

void mitk::AbstractClassifier::SetNthItems	(	const char *	val,
		unsigned int	idx
	)

Definition at line 20 of file mitkAbstractClassifier.cpp.

References mitk::BaseData::GetPropertyList().

virtual void mitk::AbstractClassifier::SetPointWiseWeight ( const Eigen::MatrixXd & W )

inlinevirtual

SetPointWiseWeight.

Parameters

W,The pointwise weights. W matrix of shape = [n_samples, 1]

Definition at line 93 of file mitkAbstractClassifier.h.

virtual void mitk::AbstractClassifier::SetRequestedRegion ( const itk::DataObject * data )

inlinevirtual

Set the requested region from this data object to match the requested region of the data object passed in as a parameter.

This method is implemented in the concrete subclasses of BaseData.

Implements mitk::BaseData.

Definition at line 180 of file mitkAbstractClassifier.h.

virtual void mitk::AbstractClassifier::SetRequestedRegionToLargestPossibleRegion ( )

inlinevirtual

Set the RequestedRegion to the LargestPossibleRegion.

This forces a filter to produce all of the output in one execution (i.e. not streaming) on the next call to Update().

Implements mitk::BaseData.

Definition at line 176 of file mitkAbstractClassifier.h.

virtual bool mitk::AbstractClassifier::SupportsPointWiseProbability ( )

pure virtual

SupportsPointWiseProbability.

Returns: True if the classifier supports pointwise class probability calculation else false

Implemented in mitk::LibSVMClassifier, and mitk::VigraRandomForestClassifier.

virtual bool mitk::AbstractClassifier::SupportsPointWiseWeight ( )

pure virtual

SupportsPointWiseWeight.

Returns: True if the classifier supports pointwise weighting else false

Implemented in mitk::LibSVMClassifier, and mitk::VigraRandomForestClassifier.

virtual void mitk::AbstractClassifier::UsePointWiseProbability ( bool value )

inlinevirtual

UsePointWiseProbabilities.

Parameters

value

Definition at line 144 of file mitkAbstractClassifier.h.

virtual void mitk::AbstractClassifier::UsePointWiseWeight ( bool value )

inlinevirtual

UsePointWiseWeight.

Parameters

toggle weighting on/off

Reimplemented in mitk::VigraRandomForestClassifier.

Definition at line 102 of file mitkAbstractClassifier.h.

Referenced by mitk::VigraRandomForestClassifier::UsePointWiseWeight().

virtual bool mitk::AbstractClassifier::VerifyRequestedRegion ( )

inlinevirtual

Verify that the RequestedRegion is within the LargestPossibleRegion.

If the RequestedRegion is not within the LargestPossibleRegion, then the filter cannot possibly satisfy the request. This method returns true if the request can be satisfied (even if it will be necessary to process the entire LargestPossibleRegion) and returns false otherwise. This method is used by PropagateRequestedRegion(). PropagateRequestedRegion() throws a InvalidRequestedRegionError exception if the requested region is not within the LargestPossibleRegion.

Implements mitk::BaseData.

Definition at line 178 of file mitkAbstractClassifier.h.

Member Data Documentation

bool mitk::AbstractClassifier::m_IsUsingPointWiseProbability

protected

Definition at line 160 of file mitkAbstractClassifier.h.

bool mitk::AbstractClassifier::m_IsUsingPointWiseWeight

protected

Definition at line 118 of file mitkAbstractClassifier.h.

Eigen::MatrixXi mitk::AbstractClassifier::m_OutLabel

protected

Definition at line 66 of file mitkAbstractClassifier.h.

Eigen::MatrixXd mitk::AbstractClassifier::m_OutProbability

protected

Definition at line 159 of file mitkAbstractClassifier.h.

Eigen::MatrixXd mitk::AbstractClassifier::m_PointWiseWeight

protected

Definition at line 117 of file mitkAbstractClassifier.h.

The documentation for this class was generated from the following files:

Public Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Function Documentation

Member Data Documentation