ImageResampler.cpp File Reference

#include "mitkCommandLineParser.h"
#include <mitkIOUtil.h>
#include <mitkRegistrationWrapper.h>
#include <mitkImage.h>
#include <mitkImageCast.h>
#include <mitkITKImageImport.h>
#include <mitkImageTimeSelector.h>
#include <mitkDiffusionPropertyHelper.h>
#include <mitkProperties.h>
#include <itksys/SystemTools.hxx>
#include <itkDirectory.h>
#include "itkLinearInterpolateImageFunction.h"
#include "itkWindowedSincInterpolateImageFunction.h"
#include "itkNearestNeighborInterpolateImageFunction.h"
#include "itkIdentityTransform.h"
#include "itkResampleImageFilter.h"
#include "itkResampleDwiImageFilter.h"

Go to the source code of this file.

Typedefs
typedef itk::Image< double, 3 >	InputImageType
typedef itk::Image< unsigned char, 3 >	BinaryImageType

Functions
static mitk::Image::Pointer	TransformToReference (mitk::Image *reference, mitk::Image *moving, bool sincInterpol=false, bool nn=false)
static std::vector< std::string > &	split (const std::string &s, char delim, std::vector< std::string > &elems)
static std::vector< std::string >	split (const std::string &s, char delim)
static mitk::Image::Pointer	ResampleBySpacing (mitk::Image *input, float *spacing, bool useLinInt=true, bool useNN=false)
static void	SaveImage (std::string fileName, mitk::Image *image, std::string fileType)
	Save images according to file type. More...
mitk::Image::Pointer	ResampleDWIbySpacing (mitk::Image::Pointer input, float *spacing, bool useLinInt=true)
int	main (int argc, char *argv[])

Typedef Documentation

typedef itk::Image<unsigned char, 3> BinaryImageType

Definition at line 42 of file ImageResampler.cpp.

typedef itk::Image<double, 3> InputImageType

Definition at line 41 of file ImageResampler.cpp.

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 320 of file ImageResampler.cpp.

References mitkCommandLineParser::addArgument(), us::any_cast(), mitkCommandLineParser::Bool, mitkCommandLineParser::helpText(), mitkCommandLineParser::InputImage, mitk::DiffusionPropertyHelper::IsDiffusionWeightedImage(), mitk::IOUtil::LoadImage(), MITK_ERROR, MITK_WARN, mitkCommandLineParser::OutputFile, mitkCommandLineParser::parseArguments(), ResampleBySpacing(), ResampleDWIbySpacing(), mitk::IOUtil::Save(), mitk::IOUtil::SaveImage(), mitkCommandLineParser::setArgumentPrefix(), mitkCommandLineParser::setCategory(), mitkCommandLineParser::setContributor(), mitkCommandLineParser::setDescription(), mitkCommandLineParser::setTitle(), split(), mitkCommandLineParser::String, and TransformToReference().

static mitk::Image::Pointer ResampleBySpacing ( mitk::Image *  input, float *  spacing, bool  useLinInt = true, bool  useNN = false  )

static

1) Resampling

1) Resampling

Definition at line 137 of file ImageResampler.cpp.

References mitk::CastToItkImage(), mitk::GrabItkImageMemory(), mitk::New(), and mitk::Image::New().

Referenced by main().

mitk::Image::Pointer ResampleDWIbySpacing	(	mitk::Image::Pointer	input,
		float *	spacing,
		bool	useLinInt = true
	)

Definition at line 292 of file ImageResampler.cpp.

References mitk::CastToItkImage(), mitk::DiffusionPropertyHelper::GetGradientContainer(), mitk::DiffusionPropertyHelper::GetReferenceBValue(), mitk::GrabItkImageMemory(), mitk::DiffusionPropertyHelper::GRADIENTCONTAINERPROPERTYNAME, mitk::DiffusionPropertyHelper::InitializeImage(), mitk::FloatProperty::New(), mitk::New(), and mitk::DiffusionPropertyHelper::REFERENCEBVALUEPROPERTYNAME.

Referenced by main().

static void SaveImage ( std::string  fileName, mitk::Image *  image, std::string  fileType  )

static

Save images according to file type.

Definition at line 285 of file ImageResampler.cpp.

References mitk::IOUtil::Save().

static std::vector<std::string>& split ( const std::string &  s, char  delim, std::vector< std::string > &  elems  )

static

Definition at line 119 of file ImageResampler.cpp.

Referenced by mitk::NavigationToolReader::ConvertStringToPoint(), mitk::NavigationToolReader::ConvertStringToPointSet(), mitk::NavigationToolReader::ConvertStringToQuaternion(), mitk::EventFactory::CreateEvent(), mitk::DICOMStringToOrientationVectors(), mitk::DICOMStringToPoint3D(), mitk::DICOMStringToSpacing(), main(), split(), mitk::USDevicePersistence::StringToUSProbe(), mitk::USDevicePersistence::StringToUSVideoDevice(), mitk::ThresholdSplit< TColumnDecisionFunctor, TFeatureCalculator, TTag >::UseRandomSplit(), mitk::ConnectomicsNetworkCSVWriter::Write(), and mitk::ConnectomicsNetworkMatrixWriter::Write().

static std::vector<std::string> split ( const std::string &  s, char  delim  )

static

Definition at line 130 of file ImageResampler.cpp.

References split().

static mitk::Image::Pointer TransformToReference ( mitk::Image *  reference, mitk::Image *  moving, bool  sincInterpol = false, bool  nn = false  )

static

Definition at line 45 of file ImageResampler.cpp.

References mitk::CastToItkImage(), mitk::GrabItkImageMemory(), mitk::New(), and mitk::Image::New().

Referenced by main().