itkConnectomicsNetworkToConnectivityMatrixImageFilter.h

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/*===================================================================

The Medical Imaging Interaction Toolkit (MITK)

Copyright (c) German Cancer Research Center,
Division of Medical and Biological Informatics.
All rights reserved.

This software is distributed WITHOUT ANY WARRANTY; without
even the implied warranty of MERCHANTABILITY or FITNESS FOR
A PARTICULAR PURPOSE.

See LICENSE.txt or http://www.mitk.org for details.

===================================================================*/

#ifndef ITK_ConnectomicsNetworkToConnectivityMatrixImageFilter_H
#define ITK_ConnectomicsNetworkToConnectivityMatrixImageFilter_H

// ITK includes
#include <itkImageSource.h>
#include <itkImage.h>

// MITK includes
#include "mitkConnectomicsNetwork.h"

namespace itk
{

  class ConnectomicsNetworkToConnectivityMatrixImageFilter : public ImageSource< itk::Image< unsigned short, 2 > >
  {

  public:
    typedef ConnectomicsNetworkToConnectivityMatrixImageFilter Self;
    typedef ProcessObject Superclass;
    typedef SmartPointer< Self > Pointer;
    typedef SmartPointer< const Self > ConstPointer;

    typedef itk::Image< unsigned short, 2 > OutputImageType;
    typedef OutputImageType::PixelType OutPixelType;

    typedef mitk::ConnectomicsNetwork  InputType;

    itkFactorylessNewMacro(Self)
    itkCloneMacro(Self)
    itkTypeMacro( ConnectomicsNetworkToConnectivityMatrixImageFilter, ImageSource )

    itkSetMacro( BinaryConnectivity, bool)
    itkGetMacro( BinaryConnectivity, bool)

    itkSetMacro( RescaleConnectivity, bool)
    itkGetMacro( RescaleConnectivity, bool)

    itkSetMacro( InputNetwork, InputType::Pointer)

    void GenerateData() override;

  protected:

    ConnectomicsNetworkToConnectivityMatrixImageFilter();
    virtual ~ConnectomicsNetworkToConnectivityMatrixImageFilter();

    bool m_BinaryConnectivity;
    bool m_RescaleConnectivity;

    InputType::Pointer m_InputNetwork;

  };

}

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkConnectomicsNetworkToConnectivityMatrixImageFilter.cpp"
#endif


#endif /* ITK_ConnectomicsNetworkToConnectivityMatrixImageFilter_H */