Manual

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[detail level 123456]

An Overview
▼User Manual
The MITK User Manual
►Using MITK and Applications
Using The MITK Workbench
Using The Diffusion Imaging Application
►MITK Plugin Manuals
The Logging Plugin
The Basic Image Processing Plugin
The Command Line Modules View
The DataManager
The Dicom Plugin
DICOM Inspector
►MITK Diffusion Imaging (MITK-DI)
Importing Data
DWI Registration
Preprocessing of Diffusion Images
Signal Modeling
ODF Visualization
ODF Details
ODF Peak Extraction
DWI Denoising
Fiber Processing
Global Gibbs Tractography
Machine Learning Based Streamline Tractography
Probabilistic Streamline Tractography
Fiber Processing
Fiber Quantification
Deterministic Streamline Tractography
Fiberfox DW-MRI Simulation
Fieldmap Generator
Scalar Indices
Intra-voxel incoherent motion estimation (IVIM)
Partial Volume Analysis
The TBSS View
►The Connectomics Perspective
The Connectomics Network Data View
The Connectomics Network Operations View
The Connectomics Statistics View
The Random Parcellation View
Image Cropper Plugin
The Image Navigator
►The Measurement Toolbox Plugin
The Measurement View
The Image Statistics View
The Movie Maker Plugin
The Screenshot Maker
The Point Set Interaction View
The Pointsetinteractionmultispectrum
The Python Plugin
►The Registration Plugin
The Deformable Image Registration View
The Point Based Registration View
The Rigid Registration View
The Remeshing Plugin
►The Segmentation Plugin
The Segmentation Utilities View
The Clipping Plane
Technical design of QmitkSegmentation
How to extend the Segmentation view with external tools
The Multilabel Segmentation View
The Spectrocamrecorder
The Ultrasound Plugin
The View Navigator
The Volume Visualization Plugin
The XNAT Plugin
The Anisotropic Iterative Closest Point Registration Plugin
The Igtlplugin
The Geometry Tools
The Classificationsegmentation Plugin
The MatchPoint Registration Batch Processor Plugin
The MatchPoint Algorithm Browser View
The MatchPoint Algorithm Control Plugin
The MatchPoint Registration Evaluation View
The MatchPoint Motion/Frame Correction Plugin
The MatchPoint Registration Manipulator View
The MatchPoint Image Mapper View
The MatchPoint Registration Visualizer Plugin
The Surface Material Editor
ToFTutorial
►Examples for the use of MITK
The Simple Example module
The Simple Measurement Module
The Region Growing View
The Iso Surface Module
The Colour Image Processing Module
The View Initialization Module
►OpenCV Examples for the use of MITK
The Video Player Module
►The IGT Examples
The MITK-IGT Tutorial View
IGT Tutorial Step 5: The IGT-TrackingLab
OpenIGTLink client example
OpenIGTLink server example
An extended OpenIGTLink example
►The IGT Tracking Plugin
The MITK-IGT Tracking Toolbox
The MITK-IGT Navigation Tool Manager
The NavigationData Player
The MITK-IGT Navigation Tool Calibration
The IGT Registration view
The Usnavigation Plugin
The Object Browser
The Event Recorder Plugin
The OverlayManager Plugin
►MITK Perspective Manuals
The Visualization Perspective
►MITK MiniApps
MITK Diffusion MiniApps
▼Developer Manual
►Starting your MITK Development
The Architecture of MITK
►Setting Up Mitk
Supported Platforms
Build Instructions
Third-party libraries
Creating a new MITK project
►Getting to know MITK
Directory Structure
►The MITK Tutorial
Creating a new MITK project
MITK Tutorial - Step 0: Getting started
MITK Tutorial - Step 1: Displaying an image
MITK Tutorial - Step 2: Load one or more data sets
MITK Tutorial - Step 3: Create 3D view
MITK Tutorial - Step 4: Use several views to explore data
MITK Tutorial - Step 5: Interactively add points
MITK Tutorial - Step 6: Use an interactive region-grower
MITK Tutorial - Step 7: Convert result of region growing into a surface
MITK Tutorial - Step 8: Use QmitkStdMultiWidget as widget
MITK Tutorial - Step 9: A plug-in
MITK Tutorial - Step 10: Adding new Interaction
CMake FAQ
The MITK Style Guide and Technical Notes
►Writing Documentation
Example Class Documentation
Coding
Known Problems
Troubleshooting
►First steps in Development
How to create a new MITK Plugin
How to create a new MITK Module
How to create a new custom data type
Adding a new view to a MITK Plugin
CMake FAQ
How to create a MiniApp command line tool
►Testing
General: Tests in MITK
Automatic Rendering Tests
MITK DICOM testing
Interaction Testing in MITK
►MITK Concepts
Coding
►The C++ Micro Services
►Tutorial
Example 1 - Service Event Listener
Example 2 - Dictionary Service Module
Example 2b - Alternative Dictionary Service Module
Example 3 - Dictionary Client Module
Example 4 - Robust Dictionary Client Module
Example 5 - Service Tracker Dictionary Client Module
Example 6 - Spell Checker Service Module
Example 7 - Spell Checker Client Module
►User Documentation
The Module Context
The Resources System
Module Properties
Auto Loading Modules
Service Hooks
Static Modules
Emulating singletons with micro services
Numeric MITK data types and their usage.
Data Management Concept
Reader and Writer
MITK Image
►Properties
The Planar Figure Properties
The Segmentation Properties
Geometry Overview
Pipelining Concept
Overlays and Annotations Concepts
Persistence Concept
Rendering Concept
►Interaction Concepts
What needs to be done to implement a new event?
Interaction Concept Implementation
Interaction Related Examples in MITK
Interaction and Undo/Redo Concepts
Logging Concept
Error Handling and Exception Concept
Modular MITK
►MITK Module Manuals
►The Navigation Modules
►IGT Tutorial Overview
IGT filter pipeline
IGT Visualization Filter and MITK Concepts
IGT QT Tutorial
Tracking Lab
A deeper look into the IGT Plugins
►OpenIGTLink Tutorial
OpenIGTLink client example
OpenIGTLink server example
An extended OpenIGTLink example
How To Implement A Tracking Device
How to generate ToF DeviceModules
►The MITK OpenCL Module
►Examples
Implementing Own OpenCL-based Image Filter
The legacy OpenGL Module
How to generate ToF DeviceModules
The MITK Python Module
►The Ultrasound Module
Controlling API Devices of Telemed
Overlays and Annotations Module
The Diffusion Imaging Properties
Connectomics Rendering Properties
Migration Guide to new Interaction Concept
Migration Guide to new Geometry Concept
►Developing with the MITK Application Framework
►BlueBerry Application Framework
The Workbench: What are Views, Editors, Perspectives?
►BlueBerry Extension-Point Reference
org.blueberry.core.expressions.definitions
org.blueberry.core.expressions.commonExpression
org.blueberry.core.expressions.propertyTesters
org.blueberry.osgi.applications
org.blueberry.core.runtime.products
org.blueberry.ui.editors
org.blueberry.ui.elementFactories
org.blueberry.ui.keywords
org.blueberry.ui.menus
org.blueberry.ui.perspectiveExtensions
org.blueberry.ui.perspectives
org.blueberry.ui.preferencePages
org.blueberry.ui.presentationFactories
org.blueberry.ui.services
org.blueberry.ui.tweaklets
org.blueberry.ui.views
org.blueberry.tests
►BlueBerry Examples
A minimal BlueBerry application
Multiple perspectives and views
►Selection Service
Introduction: Selection Service Concept
Qt Model/View selections	An example application plug-in with a minimal selection service based on Qt selection models
MITK DataNode Selections	An example application plug-in with a minimal selection service based on mitk::DataNode objects
►Extension Points	A minimal applictaion that definines an extension point and collects extensions
Introduction: Extension Point/Extension Concept
Extension Point Definition
Extension Contribution
►A highly customized viewer
Introduction
Creating the CustomViewer plugin
Main Window Layout: ViewerPerspective and DicomPerspective
Adding functionality: Data Manager, Render Window, File Opening and DICOM Import
Customizing the Main Window using Qt-Stylesheets
►BlueBerry Extension-Point Reference
org.blueberry.core.expressions.definitions
org.blueberry.core.expressions.commonExpression
org.blueberry.core.expressions.propertyTesters
org.blueberry.osgi.applications
org.blueberry.core.runtime.products
org.blueberry.ui.editors
org.blueberry.ui.elementFactories
org.blueberry.ui.keywords
org.blueberry.ui.menus
org.blueberry.ui.perspectiveExtensions
org.blueberry.ui.perspectives
org.blueberry.ui.preferencePages
org.blueberry.ui.presentationFactories
org.blueberry.ui.services
org.blueberry.ui.tweaklets
org.blueberry.ui.views
org.blueberry.tests
►MITK Extension-Point Reference
org.mitk.core.ext.inputdevices
Deploying MITK
Deprecated List