Medical Imaging Interaction Toolkit  2016.11.0
Medical Imaging Interaction Toolkit
itk Namespace Reference

SET FUNCTIONS. More...

Namespaces

 Functor
 
 Statistics
 

Classes

class  AdaptiveThresholdIterator
 Iterates over an image using a variable image function, which threshold can be varied during the iteration process. More...
 
class  ADCAverageFunctor
 
class  ADCFitFunctor
 
class  AdcImageFilter
 
class  AnalyticalDiffusionQballReconstructionImageFilter
 This class takes as input one or more reference image (acquired in the absence of diffusion sensitizing gradients) and 'n' diffusion weighted images and their gradient directions and computes an image of orientation distribution function coefficients in a spherical harmonic basis. More...
 
class  B0ImageExtractionImageFilter
 This class takes as input a T2-weighted image and computes a brainmask. More...
 
class  B0ImageExtractionToSeparateImageFilter
 This class has an advanced functionality to the B0ImageExtractionImageFilter, however the b0 images are stored in a 3D+t image with each b0 image beeing a separate timestep and not averaged to a single 3D volume. More...
 
class  BiExpFitFunctor
 
class  BrainMaskExtractionImageFilter
 This class takes as input a T2-weighted image and computes a brainmask. More...
 
class  BSplineDeformableTransformInitializer
 BSplineDeformableTransformInitializer is a helper class intended to initialize the grid parameters of a BSplineDeformableTransform based on the parameters of an image. More...
 
class  CartesianToPolarVectorImageFilter
 
class  ConnectedAdaptiveThresholdImageFilter
 ImageFilter used for processing an image with an adaptive iterator (such as itkAdaptiveThresholdIterator) More...
 
class  ConnectednessFilter
 
class  ConnectomicsNetworkToConnectivityMatrixImageFilter
 
class  ContourExtractor2DImageFilter
 Computes a list of PolyLineParametricPath objects from the contours in a 2D image. More...
 
class  DftImageFilter
 2D Discrete Fourier Transform Filter (complex to real). Special issue for Fiberfox -> rearranges slice. More...
 
class  DiffusionIntravoxelIncoherentMotionReconstructionImageFilter
 
class  DiffusionKurtosisReconstructionImageFilter
 This filter provides the fit of the kurtosis (non-IVIM) signal to the data. More...
 
class  DiffusionMultiShellQballReconstructionImageFilter
 
class  DiffusionQballGeneralizedFaImageFilter
 
class  DiffusionQballPrepareVisualizationImageFilter
 
class  DiffusionQballReconstructionImageFilter
 This class takes as input one or more reference images (acquired in the absence of diffusion sensitizing gradients) and 'n' diffusion weighted images and their gradient directions and computes an image of orientation distribution functions (ODFs). More...
 
class  DiffusionTensorPrincipalDirectionImageFilter
 Extracts principal eigenvectors of the input tensors. More...
 
class  DistanceMapFilter
 
class  DwiGradientLengthCorrectionFilter
 
class  DwiNormilzationFilter
 Normalizes the data vectors either using the specified reference value or the voxelwise baseline value. More...
 
class  DwiPhantomGenerationFilter
 Generation of synthetic diffusion weighted images using a second rank tensor model. More...
 
class  DWIVoxelFunctor
 The DWIVoxelFunctor class Abstract basisclass for voxelprocessing of Diffusion Weighted Images. More...
 
class  ElectrostaticRepulsionDiffusionGradientReductionFilter
 Select subset of the input vectors equally distributed over the sphere using an iterative electrostatic repulsion strategy. More...
 
class  EvaluateDirectionImagesFilter
 Evaluates the voxel-wise angular error between two sets of directions. More...
 
class  EvaluateTractogramDirectionsFilter
 Calculates the voxel-wise angular error of the input tractogram to a set of voxel-wise directions. More...
 
class  ExtendedLabelStatisticsImageFilter
 Extension of the itkLabelStatisticsImageFilter that also calculates the Skewness,Kurtosis,Entropy,Uniformity. More...
 
class  ExtendedStatisticsImageFilter
 Extension of the itkStatisticsImageFilter that also calculates the Skewness and Kurtosis. More...
 
class  ExtractChannelFromRgbaImageFilter
 
class  ExtractDwiChannelFilter
 Remove specified channels from diffusion-weighted image. More...
 
class  FiberCurvatureFilter
 Generates artificial fibers distributed in and interpolated between the input planar figures. More...
 
class  FibersFromPlanarFiguresFilter
 Generates artificial fibers distributed in and interpolated between the input planar figures. More...
 
class  FieldmapGeneratorFilter
 Generate float image with artificial frequency maps used by Fiberfox. Simulates additional frequencies at (possibly multiple) positions based on 3D gaussians with the specified variance and amplitude and/or as a linear gradient in the image. See "Fiberfox: Facilitating the creation of realistic white matter software phantoms" (DOI: 10.1002/mrm.25045) for details. More...
 
class  FiniteDiffOdfMaximaExtractionFilter
 Extract ODF peaks by searching all local maxima on a densely sampled ODF und clustering these maxima to get the underlying fiber direction. NrOdfDirections: number of sampling points on the ODF surface (about 20000 is a good value) More...
 
class  FslPeakImageConverter
 
class  GaussianInterpolateImageFunction
 Evaluates the Gaussian interpolation of an image. More...
 
class  GibbsTrackingFilter
 Performes global fiber tractography on the input Q-Ball or tensor image (Gibbs tracking, Reisert 2010). More...
 
class  HessianMatrixEigenvalueImageFilter
 
class  ImageIOFactoryRegisterManager
 
class  ImageToPathFilter
 Base class for filters that take an image as input and produce an path as output. More...
 
class  ImportMitkImageContainer
 
class  Index
 
class  IntelligentBinaryClosingFilter
 
struct  IVIM_3param
 
struct  IVIM_base
 
struct  IVIM_d_and_f
 
struct  IVIM_dstar_only
 
struct  IVIM_fixd
 
struct  IVIM_fixdstar
 
class  IVIMSquaredEuclideanMetric
 
class  IVIMSquaredEuclideanMetric< itk::VariableLengthVector< double > >
 
class  IVIMSquaredEuclideanMetric< itk::VariableLengthVector< float > >
 
class  IVIMSquaredEuclideanMetric< itk::Vector< double, 3 > >
 
class  KspaceImageFilter
 Simulates k-space acquisition of one slice with a single shot EPI sequence. Enables the simulation of various effects occuring during real MR acquisitions: More...
 
struct  kurtosis_fit_lsq_function
 
struct  kurtosis_fit_omit_unweighted
 A fitting function handling the unweighted signal b_0 as a fitted parameter. More...
 
struct  KurtosisFitConfiguration
 
class  KurtosisFitFunctor
 
class  LabelSampler
 
class  LineHistogramBasedMassImageFilter
 
class  LocalVariationImageFilter
 Calculates the local variation in each pixel. More...
 
class  MaskImageFilter2
 
struct  MeasAndBvals
 
class  MergeDiffusionImagesFilter
 Merges diffusion weighted images, e.g. to generate one multishell volume from several single shell volumes. More...
 
class  MinMaxImageFilterWithIndex
 
class  MinMaxLabelImageFilterWithIndex
 
class  MLBSTrackingFilter
 Performes deterministic streamline tracking on the input tensor image. More...
 
class  MrtrixPeakImageConverter
 
class  MultiGaussianImageSource
 Generate an 3-dimensional multigaussian image. More...
 
class  MultiHistogramFilter
 
class  MutexLockHolder
 
class  NeighborhoodFunctorImageFilter
 
class  NonLocalMeansDenoisingFilter
 This class denoises a vectorimage according to the non-local means procedure. More...
 
class  NonUniformBSpline
 BSpline with nonuniform knot spacing. More...
 
class  OdfMaximaExtractionFilter
 
class  OrientationDistributionFunction
 Represents an ODF for Q-Ball imaging. More...
 
class  PointShell
 
class  PolarToCartesianVectorImageFilter
 
class  ProjectionFilter
 Projection part of the TBSS pipeline. More...
 
class  QBallToRgbImageFilter
 
class  RadialMultishellToSingleshellImageFilter
 
class  RegularizedIVIMLocalVariationImageFilter
 Calculates the local variation in each pixel. More...
 
class  RegularizedIVIMReconstructionFilter
 Applies a total variation denoising filter to an image. More...
 
class  RegularizedIVIMReconstructionSingleIteration
 Applies a total variation denoising filter to an image. More...
 
class  RemoveDwiChannelFilter
 Remove spcified channels from diffusion-weighted image. More...
 
class  ResampleDwiImageFilter
 Resample DWI channel by channel. More...
 
class  ResidualImageFilter
 
class  ShCoefficientImageExporter
 
class  ShCoefficientImageImporter
 
class  ShortestPathCostFunction
 
class  ShortestPathCostFunctionLiveWire
 Cost function for LiveWire purposes. Specific features are considered to calculate cummulative costs of a link between two pixels. These are: More...
 
class  ShortestPathCostFunctionTbss
 
class  ShortestPathImageFilter
 
class  ShortestPathNode
 
class  SkeletonizationFilter
 Skeletonization part of the TBSS pipeline. More...
 
class  SlowPolyLineParametricPath
 Represent a path of line segments through ND Space. More...
 
class  SmartPointer
 
class  SmoothedClassProbabilites
 
class  SplitDWImageFilter
 Splits a DW-Image passed in as input into a 3D-t image where each volume coresponds to a gradient image ( or the unweighted b0 ) More...
 
class  SquaredEuclideanMetric
 
class  StochasticTractographyFilter
 
class  StreamlineTrackingFilter
 Performes deterministic streamline tracking on the input tensor image. More...
 
class  StructureTensorEigenvalueImageFilter
 
class  TensorDerivedMeasurementsFilter
 
class  TensorImageToDiffusionImageFilter
 
class  TensorImageToQBallImageFilter
 
class  TensorReconstructionWithEigenvalueCorrectionFilter
 
class  TensorToL2NormImageFilter
 
class  TensorToRgbImageFilter
 
class  ThreeLayerPointShell
 
class  TotalVariationDenoisingImageFilter
 Applies a total variation denoising filter to an image. More...
 
class  TotalVariationSingleIterationImageFilter
 Applies a total variation denoising filter to an image. More...
 
class  TractDensityImageFilter
 Generates tract density images from input fiberbundles (Calamante 2010). More...
 
class  TractsToDWIImageFilter
 Generates artificial diffusion weighted image volume from the input fiberbundle using a generic multicompartment model. See "Fiberfox: Facilitating the creation of realistic white matter software phantoms" (DOI: 10.1002/mrm.25045) for details. More...
 
class  TractsToFiberEndingsImageFilter
 Generates image where the pixel values are set according to the number of fibers ending in the voxel. More...
 
class  TractsToRgbaImageFilter
 Generates RGBA image from the input fibers where color values are set according to the local fiber directions. More...
 
class  TractsToVectorImageFilter
 Extracts the voxel-wise main directions of the input fiber bundle. More...
 
class  TransformIOFactoryRegisterManager
 
class  VariableLengthVector
 
class  VectorImageToImageFilter
 This class extracts an image out of a vectorimage. More...
 
class  VtkAbstractTransform
 Adapter from vtkAbstractTransform to itk::Transform<TScalarType, 3, 3> More...
 

Typedefs

typedef std::ostream OutputStreamType
 
typedef std::istream InputStreamType
 
typedef Image< Array< double >, 3 > ProbabilityDistributionImageType
 Performs probabilistic streamline tracking on the input dwi. More...
 
typedef double DistanceType
 
typedef unsigned int NodeNumType
 

Enumerations

enum  FitScale { STRAIGHT, LOGARITHMIC }
 

Functions

static bool CompareVectors (const vnl_vector_fixed< double, 3 > &v1, const vnl_vector_fixed< double, 3 > &v2)
 
template<typename TComponent , unsigned int NOdfDirections>
MITKDIFFUSIONCORE_EXPORT OutputStreamTypeoperator<< (OutputStreamType &os, const OrientationDistributionFunction< TComponent, NOdfDirections > &c)
 
template<typename TComponent , unsigned int NOdfDirections>
MITKDIFFUSIONCORE_EXPORT InputStreamTypeoperator>> (InputStreamType &is, OrientationDistributionFunction< TComponent, NOdfDirections > &c)
 
static bool CompareVectorLengths (const vnl_vector_fixed< double, 3 > &v1, const vnl_vector_fixed< double, 3 > &v2)
 
void ITK_ABI_IMPORT NiftiImageIOFactoryRegister__Private ()
 
void ITK_ABI_IMPORT NrrdImageIOFactoryRegister__Private ()
 
void ITK_ABI_IMPORT GiplImageIOFactoryRegister__Private ()
 
void ITK_ABI_IMPORT HDF5ImageIOFactoryRegister__Private ()
 
void ITK_ABI_IMPORT JPEGImageIOFactoryRegister__Private ()
 
void ITK_ABI_IMPORT GDCMImageIOFactoryRegister__Private ()
 
void ITK_ABI_IMPORT BMPImageIOFactoryRegister__Private ()
 
void ITK_ABI_IMPORT LSMImageIOFactoryRegister__Private ()
 
void ITK_ABI_IMPORT PNGImageIOFactoryRegister__Private ()
 
void ITK_ABI_IMPORT TIFFImageIOFactoryRegister__Private ()
 
void ITK_ABI_IMPORT VTKImageIOFactoryRegister__Private ()
 
void ITK_ABI_IMPORT StimulateImageIOFactoryRegister__Private ()
 
void ITK_ABI_IMPORT BioRadImageIOFactoryRegister__Private ()
 
void ITK_ABI_IMPORT MetaImageIOFactoryRegister__Private ()
 
void ITK_ABI_IMPORT MRCImageIOFactoryRegister__Private ()
 
void ITK_ABI_IMPORT GE4ImageIOFactoryRegister__Private ()
 
void ITK_ABI_IMPORT GE5ImageIOFactoryRegister__Private ()
 
void ITK_ABI_IMPORT HDF5TransformIOFactoryRegister__Private ()
 
void ITK_ABI_IMPORT MatlabTransformIOFactoryRegister__Private ()
 
void ITK_ABI_IMPORT TxtTransformIOFactoryRegister__Private ()
 

Variables

template<class TPixel , unsigned int VImageDimension>
class ITK_EXPORT Image
 

Detailed Description

SET FUNCTIONS.

GET FUNCTIONS

Typedef Documentation

typedef double itk::DistanceType

Definition at line 23 of file itkShortestPathNode.h.

typedef std::istream itk::InputStreamType

Definition at line 215 of file itkOrientationDistributionFunction.h.

typedef unsigned int itk::NodeNumType

Definition at line 25 of file itkShortestPathNode.h.

typedef std::ostream itk::OutputStreamType

This extra typedef is necessary for preventing an Internal Compiler Error in Microsoft Visual C++ 6.0. This typedef is not needed for any other compiler.

Definition at line 214 of file itkOrientationDistributionFunction.h.

typedef Image< Array< double >, 3 > itk::ProbabilityDistributionImageType

Performs probabilistic streamline tracking on the input dwi.

Types for Probability Distribution

Definition at line 39 of file itkStochasticTractographyFilter.h.

Enumeration Type Documentation

Enumerator
STRAIGHT 
LOGARITHMIC 

Definition at line 217 of file itkDiffusionKurtosisReconstructionImageFilter.h.

Function Documentation

void ITK_ABI_IMPORT itk::BioRadImageIOFactoryRegister__Private ( )
void ITK_ABI_IMPORT itk::BMPImageIOFactoryRegister__Private ( )
static bool itk::CompareVectorLengths ( const vnl_vector_fixed< double, 3 > &  v1,
const vnl_vector_fixed< double, 3 > &  v2 
)
static
static bool itk::CompareVectors ( const vnl_vector_fixed< double, 3 > &  v1,
const vnl_vector_fixed< double, 3 > &  v2 
)
static
void ITK_ABI_IMPORT itk::GDCMImageIOFactoryRegister__Private ( )
void ITK_ABI_IMPORT itk::GE4ImageIOFactoryRegister__Private ( )
void ITK_ABI_IMPORT itk::GE5ImageIOFactoryRegister__Private ( )
void ITK_ABI_IMPORT itk::GiplImageIOFactoryRegister__Private ( )
void ITK_ABI_IMPORT itk::HDF5ImageIOFactoryRegister__Private ( )
void ITK_ABI_IMPORT itk::HDF5TransformIOFactoryRegister__Private ( )
void ITK_ABI_IMPORT itk::JPEGImageIOFactoryRegister__Private ( )
void ITK_ABI_IMPORT itk::LSMImageIOFactoryRegister__Private ( )
void ITK_ABI_IMPORT itk::MatlabTransformIOFactoryRegister__Private ( )
void ITK_ABI_IMPORT itk::MetaImageIOFactoryRegister__Private ( )
void ITK_ABI_IMPORT itk::MRCImageIOFactoryRegister__Private ( )
void ITK_ABI_IMPORT itk::NiftiImageIOFactoryRegister__Private ( )
void ITK_ABI_IMPORT itk::NrrdImageIOFactoryRegister__Private ( )
template<typename TComponent , unsigned int NOdfDirections>
MITKDIFFUSIONCORE_EXPORT OutputStreamType& itk::operator<< ( OutputStreamType os,
const OrientationDistributionFunction< TComponent, NOdfDirections > &  c 
)

Referenced by mitk::operator<<().

template<typename TComponent , unsigned int NOdfDirections>
MITKDIFFUSIONCORE_EXPORT InputStreamType& itk::operator>> ( InputStreamType is,
OrientationDistributionFunction< TComponent, NOdfDirections > &  c 
)
void ITK_ABI_IMPORT itk::PNGImageIOFactoryRegister__Private ( )
void ITK_ABI_IMPORT itk::StimulateImageIOFactoryRegister__Private ( )
void ITK_ABI_IMPORT itk::TIFFImageIOFactoryRegister__Private ( )
void ITK_ABI_IMPORT itk::TxtTransformIOFactoryRegister__Private ( )
void ITK_ABI_IMPORT itk::VTKImageIOFactoryRegister__Private ( )

Variable Documentation