Extracts a single region from a segmentation image and creates a new image with same geometry of the input image. More...

#include <mitkPickingTool.h>

Inheritance diagram for mitk::PickingTool:

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Collaboration diagram for mitk::PickingTool:

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Public Member Functions
	mitkClassMacro (PickingTool, AutoSegmentationTool)

Pointer	Clone () const

virtual const char **	GetXPM () const override
	Returns an icon in the XPM format. More...

virtual const char *	GetName () const override
	Returns the name of this tool. Make it short! More...

us::ModuleResource	GetIconResource () const override
	Returns the tool button icon of the tool wrapped by a usModuleResource. More...

virtual void	Activated () override
	Called when the tool gets activated. More...

virtual void	Deactivated () override
	Called when the tool gets deactivated. More...

virtual DataNode::Pointer	GetPointSetNode ()

mitk::DataNode *	GetReferenceData ()

mitk::DataNode *	GetWorkingData ()

mitk::DataStorage *	GetDataStorage ()

void	ConfirmSegmentation ()

Public Member Functions inherited from mitk::AutoSegmentationTool
	mitkClassMacro (AutoSegmentationTool, Tool)

void	SetOverwriteExistingSegmentation (bool overwrite)

std::string	GetCurrentSegmentationName ()
	Gets the name of the currently selected segmentation node. More...

virtual mitk::DataNode *	GetTargetSegmentationNode ()
	Depending on the selected mode either returns the currently selected segmentation or creates a new one from the selected reference data and adds the new segmentation to the datastorage. More...

Public Member Functions inherited from mitk::Tool
	mitkClassMacro (Tool, EventStateMachine)

virtual std::string	GetIconPath () const
	Returns the path of an icon. More...

virtual us::ModuleResource	GetCursorIconResource () const
	Returns the path of a cursor icon. More...

virtual void	InitializeStateMachine ()

virtual itk::Object::Pointer	GetGUI (const std::string &toolkitPrefix, const std::string &toolkitPostfix)
	Interface for GUI creation. More...

virtual NodePredicateBase::ConstPointer	GetReferenceDataPreference () const

virtual NodePredicateBase::ConstPointer	GetWorkingDataPreference () const

DataNode::Pointer	CreateEmptySegmentationNode (Image *original, const std::string &organName, const mitk::Color &color)

DataNode::Pointer	CreateSegmentationNode (Image *image, const std::string &organName, const mitk::Color &color)

virtual bool	CanHandle (BaseData *referenceData) const

Public Member Functions inherited from mitk::EventStateMachine
virtual std::vector< std::string >	GetClassHierarchy () const override

virtual const char *	GetClassName () const

bool	LoadStateMachine (const std::string &filename, const us::Module *module=nullptr)
	Loads XML resource. More...

bool	HandleEvent (InteractionEvent event, DataNode dataNode)

void	EnableUndo (bool enable)
	Enables or disabled Undo. More...

void	EnableInteraction (bool enable)
	Enables/disables the state machine. In un-enabled state it won't react to any events. More...

Public Member Functions inherited from mitk::InteractionEventHandler
bool	SetEventConfig (const std::string &filename, const us::Module *module=nullptr)
	Loads a configuration from an XML resource. More...

bool	SetEventConfig (const EventConfig &config)
	Loads a configuration from an EventConfig object. More...

EventConfig	GetEventConfig () const
	Returns the current configuration. More...

bool	AddEventConfig (const std::string &filename, const us::Module *module=nullptr)
	This method extends the configuration. More...

bool	AddEventConfig (const EventConfig &config)
	This method extends the configuration. The configuration from the EventConfig object is loaded and only the ones conflicting are replaced by the new one. This way several configurations can be combined. More...

Public Member Functions inherited from mitk::InteractionEventObserver
	InteractionEventObserver ()

virtual	~InteractionEventObserver ()

void	Disable ()

void	Enable ()

bool	IsEnabled () const

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from mitk::EventStateMachine
static const char *	GetStaticNameOfClass ()

Static Public Member Functions inherited from mitk::InteractionEventHandler
static const char *	GetStaticNameOfClass ()

Protected Member Functions
	PickingTool ()

virtual	~PickingTool ()

void	OnPointAdded ()

template<typename TPixel , unsigned int VImageDimension>
void	StartRegionGrowing (itk::Image< TPixel, VImageDimension > itkImage, mitk::BaseGeometry imageGeometry, mitk::PointSet::PointType seedPoint)

Protected Member Functions inherited from mitk::AutoSegmentationTool
	AutoSegmentationTool ()

virtual	~AutoSegmentationTool ()

virtual const char *	GetGroup () const override
	Name of a group. More...

virtual itk::SmartPointer< Image >	Get3DImage (itk::SmartPointer< Image > image, unsigned int timestep)

Protected Member Functions inherited from mitk::Tool
virtual void	SetToolManager (ToolManager *)

void	ConnectActionsAndFunctions () override

	Tool ()

	Tool (const char *)

virtual	~Tool ()

virtual void	Notify (InteractionEvent *interactionEvent, bool isHandled) override

bool	FilterEvents (InteractionEvent , DataNode ) override

Protected Member Functions inherited from mitk::EventStateMachine
	EventStateMachine ()

virtual	~EventStateMachine ()

void	AddActionFunction (const std::string &action, TActionFunctor *functor)

void	AddActionFunction (const std::string &action, const ActionFunctionDelegate &delegate)

void	AddConditionFunction (const std::string &condition, const ConditionFunctionDelegate &delegate)

StateMachineState *	GetCurrentState () const

void	ResetToStartState ()
	ResetToStartState Reset state machine to it initial starting state. More...

virtual bool	CheckCondition (const StateMachineCondition &condition, const InteractionEvent *interactionEvent)

virtual void	ExecuteAction (StateMachineAction action, InteractionEvent interactionEvent)

void	SetMouseCursor (const char *xpm[], int hotspotX, int hotspotY)
	Sets the specified mouse cursor. More...

void	ResetMouseCursor ()
	Resets the mouse cursor (if modified by the SlicesCoordinator) to its original state. More...

StateMachineTransition *	GetExecutableTransition (InteractionEvent *event)
	Returns the executable transition for the given event. More...

Protected Member Functions inherited from mitk::InteractionEventHandler
	InteractionEventHandler ()

virtual	~InteractionEventHandler ()

PropertyList::Pointer	GetAttributes () const

std::string	MapToEventVariant (InteractionEvent *interactionEvent)

virtual void	ConfigurationChanged ()

Protected Attributes
long	m_PointSetAddObserverTag

mitk::DataNode::Pointer	m_ResultNode

PointSet::Pointer	m_PointSet

SinglePointDataInteractor::Pointer	m_SeedPointInteractor

DataNode::Pointer	m_PointSetNode

DataNode *	m_WorkingData

Protected Attributes inherited from mitk::AutoSegmentationTool
bool	m_OverwriteExistingSegmentation

Protected Attributes inherited from mitk::Tool
std::string	m_EventConfig
	Let subclasses change their event configuration. More...

ToolManager *	m_ToolManager

Protected Attributes inherited from mitk::EventStateMachine
bool	m_IsActive

UndoController *	m_UndoController

bool	m_UndoEnabled

Additional Inherited Members
Public Types inherited from mitk::Tool
typedef mitk::Label::PixelType	DefaultSegmentationDataType

Public Types inherited from mitk::EventStateMachine
typedef EventStateMachine	Self

typedef InteractionEventHandler	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef std::map< std::string, TActionFunctor * >	ActionFunctionsMapType

typedef itk::SmartPointer< StateMachineState >	StateMachineStateType

Public Types inherited from mitk::InteractionEventHandler
typedef InteractionEventHandler	Self

typedef itk::Object	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

Public Attributes inherited from mitk::Tool
Message	GUIProcessEventsMessage
	To let GUI process new events (e.g. qApp->processEvents() ) More...

Message1< std::string >	ErrorMessage
	To send error messages (to be shown by some GUI) More...

Message1< bool >	CurrentlyBusy
	To send whether the tool is busy (to be shown by some GUI) More...

Message1< std::string >	GeneralMessage
	To send general messages (to be shown by some GUI) More...

Protected Types inherited from mitk::EventStateMachine
typedef MessageAbstractDelegate2< StateMachineAction , InteractionEvent , void >	ActionFunctionDelegate

typedef MessageAbstractDelegate1< const InteractionEvent *, bool >	ConditionFunctionDelegate

Detailed Description

Extracts a single region from a segmentation image and creates a new image with same geometry of the input image.

The region is extracted in 3D space. This is done by performing region growing within the desired region. Use shift click to add the seed point.

See also: mitk::Tool; QmitkInteractiveSegmentation

Definition at line 47 of file mitkPickingTool.h.

Constructor & Destructor Documentation

mitk::PickingTool::PickingTool ( )

protected

Definition at line 43 of file mitkPickingTool.cpp.

References m_PointSet, m_PointSetAddObserverTag, m_PointSetNode, m_ResultNode, m_SeedPointInteractor, mitk::BoolProperty::New(), mitk::IntProperty::New(), mitk::FloatProperty::New(), mitk::SinglePointDataInteractor::New(), mitk::New(), mitk::StringProperty::New(), mitk::ColorProperty::New(), mitk::DataNode::New(), mitk::PointSet::New(), and OnPointAdded().

mitk::PickingTool::~PickingTool ( )

protectedvirtual

Definition at line 70 of file mitkPickingTool.cpp.

Member Function Documentation

void mitk::PickingTool::Activated ( )

overridevirtual

Called when the tool gets activated.

Derived tools should call their parents implementation at the beginning of the overriding function.

Reimplemented from mitk::Tool.

Definition at line 92 of file mitkPickingTool.cpp.

References mitk::DataStorage::Add(), mitk::DataStorage::Exists(), and GetDataStorage().

Pointer mitk::PickingTool::Clone ( ) const

void mitk::PickingTool::ConfirmSegmentation ( )

Definition at line 232 of file mitkPickingTool.cpp.

References GetDataStorage(), mitk::RenderingManager::GetInstance(), mitk::FloatProperty::New(), mitk::StringProperty::New(), mitk::ColorProperty::New(), mitk::DataNode::New(), and mitk::RenderingManager::RequestUpdateAll().

void mitk::PickingTool::Deactivated ( )

overridevirtual

Called when the tool gets deactivated.

Derived tools should call their parents implementation at the end of the overriding function.

Reimplemented from mitk::Tool.

Definition at line 107 of file mitkPickingTool.cpp.

References GetDataStorage().

mitk::DataStorage * mitk::PickingTool::GetDataStorage ( )

Definition at line 122 of file mitkPickingTool.cpp.

us::ModuleResource mitk::PickingTool::GetIconResource ( ) const

overridevirtual

Returns the tool button icon of the tool wrapped by a usModuleResource.

Returns: a valid ModuleResource or an invalid if this function is not reimplemented

Reimplemented from mitk::Tool.

Definition at line 85 of file mitkPickingTool.cpp.

References ModuleContext::GetModule(), us::GetModuleContext(), and us::Module::GetResource().

const char * mitk::PickingTool::GetName ( ) const

overridevirtual

Returns the name of this tool. Make it short!

This name has to fit into some kind of button in most applications, so take some time to think of a good name!

Implements mitk::Tool.

Definition at line 80 of file mitkPickingTool.cpp.

mitk::DataNode::Pointer mitk::PickingTool::GetPointSetNode ( )

virtual

Definition at line 132 of file mitkPickingTool.cpp.

mitk::DataNode * mitk::PickingTool::GetReferenceData ( )

Definition at line 117 of file mitkPickingTool.cpp.

mitk::DataNode * mitk::PickingTool::GetWorkingData ( )

Definition at line 127 of file mitkPickingTool.cpp.

const char ** mitk::PickingTool::GetXPM ( ) const

overridevirtual

Returns an icon in the XPM format.

This icon has to fit into some kind of button in most applications, so make it smaller than 25x25 pixels.

XPM is e.g. supported by The Gimp. But if you open any XPM file in your text editor, you will see that you could also "draw" it with an editor.

Implements mitk::Tool.

Definition at line 75 of file mitkPickingTool.cpp.

mitk::PickingTool::mitkClassMacro	(	PickingTool	,
		AutoSegmentationTool
	)

static Pointer mitk::PickingTool::New ( )

static

void mitk::PickingTool::OnPointAdded ( )

protected

Definition at line 137 of file mitkPickingTool.cpp.

References AccessByItk_2, mitk::DataStorage::Add(), mitk::DataStorage::Exists(), GetDataStorage(), mitk::BaseData::GetGeometry(), mitk::BaseRenderer::GetInstance(), mitk::BaseRenderer::GetRenderWindowByName(), mitk::BaseRenderer::GetTimeStep(), mitk::ImageTimeSelector::New(), and mitk::DataStorage::Remove().

Referenced by PickingTool().

template<typename TPixel , unsigned int VImageDimension>

void mitk::PickingTool::StartRegionGrowing	(	itk::Image< TPixel, VImageDimension > *	itkImage,
		mitk::BaseGeometry *	imageGeometry,
		mitk::PointSet::PointType	seedPoint
	)

protected

Definition at line 189 of file mitkPickingTool.cpp.

References mitk::Clone(), mitk::RenderingManager::GetInstance(), mitk::ImportItkImage(), mitk::New(), mitk::Image::New(), mitk::RenderingManager::RequestUpdateAll(), and mitk::BaseGeometry::WorldToIndex().

Member Data Documentation

PointSet::Pointer mitk::PickingTool::m_PointSet

protected

Definition at line 87 of file mitkPickingTool.h.

Referenced by PickingTool().

long mitk::PickingTool::m_PointSetAddObserverTag

protected

Definition at line 76 of file mitkPickingTool.h.

Referenced by PickingTool().

DataNode::Pointer mitk::PickingTool::m_PointSetNode

protected

Definition at line 89 of file mitkPickingTool.h.

Referenced by PickingTool().

mitk::DataNode::Pointer mitk::PickingTool::m_ResultNode

protected

Definition at line 78 of file mitkPickingTool.h.

Referenced by PickingTool().

SinglePointDataInteractor::Pointer mitk::PickingTool::m_SeedPointInteractor

protected

Definition at line 88 of file mitkPickingTool.h.

Referenced by PickingTool().

DataNode* mitk::PickingTool::m_WorkingData

protected

Definition at line 91 of file mitkPickingTool.h.

The documentation for this class was generated from the following files:

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation