Medical Imaging Interaction Toolkit  2016.11.0
Medical Imaging Interaction Toolkit
Classes | Public Types | Public Member Functions | Protected Member Functions | Protected Attributes | List of all members
mitk::PartialVolumeAnalysisHistogramCalculator Class Reference

Class for calculating statistics and histogram for an (optionally masked) image. More...

#include <mitkPartialVolumeAnalysisHistogramCalculator.h>

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Classes

struct  Statistics
 

Public Types

enum  { MASKING_MODE_NONE, MASKING_MODE_IMAGE, MASKING_MODE_PLANARFIGURE }
 
typedef mitk::Image::HistogramType HistogramType
 
typedef mitk::Image::HistogramType::ConstIterator HistogramConstIteratorType
 
typedef Statistics StatisticsType
 
typedef itk::TimeStamp TimeStampType
 
typedef bool BoolType
 
typedef itk::Image< unsigned char, 3 > MaskImage3DType
 
typedef itk::Image< unsigned char, 2 > MaskImage2DType
 
typedef itk::Image< float, 2 > InternalImage2DType
 

Public Member Functions

 mitkClassMacroItkParent (PartialVolumeAnalysisHistogramCalculator, itk::Object) static Pointer New()
 
Pointer Clone () const
 
void SetImage (const mitk::Image *image)
 Set image from which to compute statistics. More...
 
void SetImageMask (const mitk::Image *imageMask)
 Set binary image for masking. More...
 
void SetPlanarFigure (const mitk::PlanarFigure *planarFigure)
 Set planar figure for masking. More...
 
void AddAdditionalResamplingImage (const mitk::Image *image)
 Set image for which the same resampling will be applied. and available via GetAdditionalResampledImage() More...
 
void SetMaskingMode (unsigned int mode)
 Set/Get operation mode for masking. More...
 
virtual unsigned int GetMaskingMode ()
 Set/Get operation mode for masking. More...
 
void SetMaskingModeToNone ()
 Set/Get operation mode for masking. More...
 
void SetMaskingModeToImage ()
 Set/Get operation mode for masking. More...
 
void SetMaskingModeToPlanarFigure ()
 Set/Get operation mode for masking. More...
 
void SetNumberOfBins (unsigned int number)
 Set histogram number of bins. More...
 
unsigned int GetNumberOfBins ()
 Get histogram number of bins. More...
 
void SetUpsamplingFactor (float number)
 Set upsampling factor. More...
 
float GetUpsamplingFactor ()
 Get upsampling factor. More...
 
void SetGaussianSigma (float number)
 Set gaussian sigma. More...
 
unsigned int GetPlanarFigureThickness ()
 Get thickness of planar figure. More...
 
void SetPlanarFigureThickness (unsigned int number)
 Set thickness of planar figure. More...
 
float GetGaussianSigma ()
 Get histogram number of bins. More...
 
void SetModified ()
 
virtual bool ComputeStatistics ()
 Compute statistics (together with histogram) for the current masking mode. More...
 
const HistogramType * GetHistogram () const
 Retrieve the histogram depending on the current masking mode. More...
 
const Statistics & GetStatistics () const
 Retrieve statistics depending on the current masking mode. More...
 
const Image::Pointer GetInternalImage ()
 
const Image::Pointer GetInternalAdditionalResampledImage (unsigned int i)
 
void SetForceUpdate (bool b)
 

Protected Member Functions

 PartialVolumeAnalysisHistogramCalculator ()
 
virtual ~PartialVolumeAnalysisHistogramCalculator ()
 
void ExtractImageAndMask ()
 Depending on the masking mode, the image and mask from which to calculate statistics is extracted from the original input image and mask data. More...
 
bool GetPrincipalAxis (const Geometry3D *geometry, Vector3D vector, unsigned int &axis)
 If the passed vector matches any of the three principal axes of the passed geometry, the ínteger value corresponding to the axis is set and true is returned. More...
 
template<typename TPixel , unsigned int VImageDimension>
void InternalCalculateStatisticsUnmasked (const itk::Image< TPixel, VImageDimension > *image, Statistics &statistics, typename HistogramType::ConstPointer *histogram)
 
template<typename TPixel , unsigned int VImageDimension>
void InternalCalculateStatisticsMasked (const itk::Image< TPixel, VImageDimension > *image, itk::Image< unsigned char, VImageDimension > *maskImage, Statistics &statistics, typename HistogramType::ConstPointer *histogram)
 
template<typename TPixel , unsigned int VImageDimension>
void InternalCalculateMaskFromPlanarFigure (itk::Image< TPixel, VImageDimension > *image, unsigned int axis)
 
template<typename TPixel , unsigned int VImageDimension>
void InternalReorientImagePlane (const itk::Image< TPixel, VImageDimension > *image, mitk::BaseGeometry *imggeo, mitk::BaseGeometry *planegeo3D, int additionalIndex)
 
template<typename TPixel , unsigned int VImageDimension>
void InternalResampleImageFromMask (const itk::Image< TPixel, VImageDimension > *image, int additionalIndex)
 
void InternalResampleImage (const MaskImage3DType *image)
 
template<typename TPixel , unsigned int VImageDimension>
void InternalCropAdditionalImage (itk::Image< TPixel, VImageDimension > *image, int additionalIndex)
 
void InternalMaskImage (mitk::Image *image)
 
template<typename ITK_Exporter , typename VTK_Importer >
void ConnectPipelines (ITK_Exporter exporter, VTK_Importer *importer)
 
template<typename VTK_Exporter , typename ITK_Importer >
void ConnectPipelines (VTK_Exporter *exporter, ITK_Importer importer)
 
void UnmaskedStatisticsProgressUpdate ()
 
void MaskedStatisticsProgressUpdate ()
 

Protected Attributes

mitk::Image::ConstPointer m_Image
 
mitk::Image::ConstPointer m_ImageMask
 
mitk::PlanarFigure::ConstPointer m_PlanarFigure
 
HistogramType::ConstPointer m_ImageHistogram
 
HistogramType::ConstPointer m_MaskedImageHistogram
 
HistogramType::ConstPointer m_PlanarFigureHistogram
 
HistogramType::Pointer m_EmptyHistogram
 
StatisticsType m_ImageStatistics
 
StatisticsType m_MaskedImageStatistics
 
StatisticsType m_PlanarFigureStatistics
 
Statistics m_EmptyStatistics
 
unsigned int m_MaskingMode
 
bool m_MaskingModeChanged
 
mitk::Image::Pointer m_InternalImage
 
MaskImage3DType::Pointer m_InternalImageMask3D
 
MaskImage2DType::Pointer m_InternalImageMask2D
 
itk::ImageRegion< 3 > m_InternalMask3D
 
std::vector< mitk::Image::ConstPointer > m_AdditionalResamplingImages
 
std::vector< mitk::Image::Pointer > m_InternalAdditionalResamplingImages
 
TimeStampType m_ImageStatisticsTimeStamp
 
TimeStampType m_MaskedImageStatisticsTimeStamp
 
TimeStampType m_PlanarFigureStatisticsTimeStamp
 
BoolType m_ImageStatisticsCalculationTriggerBool
 
BoolType m_MaskedImageStatisticsCalculationTriggerBool
 
BoolType m_PlanarFigureStatisticsCalculationTriggerBool
 
unsigned int m_NumberOfBins
 
float m_UpsamplingFactor
 
float m_GaussianSigma
 
itk::ImageRegion< 3 > m_CropRegion
 
bool m_ForceUpdate
 
unsigned int m_PlanarFigureThickness
 

Detailed Description

Class for calculating statistics and histogram for an (optionally masked) image.

Images can be masked by either a (binary) image (of the same dimensions as the original image) or by a closed mitk::PlanarFigure, e.g. a circle or polygon. When masking with a planar figure, the slice corresponding to the plane containing the figure is extracted and then clipped with contour defined by the figure. Planar figures need to be aligned along the main axes of the image (axial, sagittal, coronal). Planar figures on arbitrary rotated planes are not supported.

For each operating mode (no masking, masking by image, masking by planar figure), the calculated statistics and histogram are cached so that, when switching back and forth between operation modes without modifying mask or image, the information doesn't need to be recalculated.

Note: currently time-resolved and multi-channel pictures are not properly supported.

Definition at line 57 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Member Typedef Documentation

typedef bool mitk::PartialVolumeAnalysisHistogramCalculator::BoolType

Definition at line 98 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

typedef mitk::Image::HistogramType::ConstIterator mitk::PartialVolumeAnalysisHistogramCalculator::HistogramConstIteratorType

Definition at line 69 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

typedef mitk::Image::HistogramType mitk::PartialVolumeAnalysisHistogramCalculator::HistogramType

Definition at line 68 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

typedef itk::Image< float, 2 > mitk::PartialVolumeAnalysisHistogramCalculator::InternalImage2DType

Definition at line 103 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

typedef itk::Image< unsigned char, 2 > mitk::PartialVolumeAnalysisHistogramCalculator::MaskImage2DType

Definition at line 101 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

typedef itk::Image< unsigned char, 3 > mitk::PartialVolumeAnalysisHistogramCalculator::MaskImage3DType

Definition at line 100 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

typedef Statistics mitk::PartialVolumeAnalysisHistogramCalculator::StatisticsType

Definition at line 95 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

typedef itk::TimeStamp mitk::PartialVolumeAnalysisHistogramCalculator::TimeStampType

Definition at line 97 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Member Enumeration Documentation

anonymous enum
Enumerator
MASKING_MODE_NONE 
MASKING_MODE_IMAGE 
MASKING_MODE_PLANARFIGURE 

Definition at line 61 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Constructor & Destructor Documentation

mitk::PartialVolumeAnalysisHistogramCalculator::PartialVolumeAnalysisHistogramCalculator ( )
protected

Definition at line 68 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References m_EmptyHistogram, m_EmptyStatistics, mitk::New(), and mitk::PartialVolumeAnalysisHistogramCalculator::Statistics::Reset().

mitk::PartialVolumeAnalysisHistogramCalculator::~PartialVolumeAnalysisHistogramCalculator ( )
protectedvirtual

Definition at line 87 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

Member Function Documentation

void mitk::PartialVolumeAnalysisHistogramCalculator::AddAdditionalResamplingImage ( const mitk::Image *  image)

Set image for which the same resampling will be applied. and available via GetAdditionalResampledImage()

Definition at line 104 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References m_AdditionalResamplingImages, m_ImageStatisticsCalculationTriggerBool, and m_ImageStatisticsTimeStamp.

Pointer mitk::PartialVolumeAnalysisHistogramCalculator::Clone ( ) const
bool mitk::PartialVolumeAnalysisHistogramCalculator::ComputeStatistics ( )
virtual

Compute statistics (together with histogram) for the current masking mode.

Computation is not executed if statistics is already up to date. In this case, false is returned; otherwise, true.

Definition at line 209 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References AccessFixedDimensionByItk_2, AccessFixedDimensionByItk_3, ExtractImageAndMask(), InternalCalculateStatisticsMasked(), InternalCalculateStatisticsUnmasked(), m_ForceUpdate, m_Image, m_ImageHistogram, m_ImageMask, m_ImageStatistics, m_ImageStatisticsCalculationTriggerBool, m_ImageStatisticsTimeStamp, m_InternalImage, m_InternalImageMask2D, m_InternalImageMask3D, m_MaskedImageHistogram, m_MaskedImageStatistics, m_MaskedImageStatisticsCalculationTriggerBool, m_MaskedImageStatisticsTimeStamp, m_MaskingMode, m_MaskingModeChanged, m_PlanarFigure, m_PlanarFigureHistogram, m_PlanarFigureStatistics, m_PlanarFigureStatisticsCalculationTriggerBool, m_PlanarFigureStatisticsTimeStamp, MASKING_MODE_IMAGE, MASKING_MODE_NONE, MASKING_MODE_PLANARFIGURE, MITK_DEBUG, and MITK_ERROR.

template<typename ITK_Exporter , typename VTK_Importer >
void mitk::PartialVolumeAnalysisHistogramCalculator::ConnectPipelines ( ITK_Exporter  exporter,
VTK_Importer *  importer 
)
inlineprotected

Connection from ITK to VTK

Definition at line 291 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by InternalCalculateMaskFromPlanarFigure().

template<typename VTK_Exporter , typename ITK_Importer >
void mitk::PartialVolumeAnalysisHistogramCalculator::ConnectPipelines ( VTK_Exporter *  exporter,
ITK_Importer  importer 
)
inlineprotected

Connection from VTK to ITK

Definition at line 312 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

void mitk::PartialVolumeAnalysisHistogramCalculator::ExtractImageAndMask ( )
protected

Depending on the masking mode, the image and mask from which to calculate statistics is extracted from the original input image and mask data.

For example, a when using a PlanarFigure as mask, the 2D image slice corresponding to the PlanarFigure will be extracted from the original image. If masking is disabled, the original image is simply passed through.

Definition at line 403 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References AccessFixedDimensionByItk_1, AccessFixedDimensionByItk_3, mitk::BaseData::GetGeometry(), mitk::BaseData::GetUpdatedGeometry(), InternalCalculateMaskFromPlanarFigure(), InternalCropAdditionalImage(), InternalMaskImage(), InternalReorientImagePlane(), InternalResampleImage(), InternalResampleImageFromMask(), m_AdditionalResamplingImages, m_Image, m_ImageMask, m_InternalAdditionalResamplingImages, m_InternalImage, m_InternalImageMask2D, m_InternalImageMask3D, m_MaskingMode, m_PlanarFigure, m_UpsamplingFactor, MASKING_MODE_IMAGE, MASKING_MODE_NONE, MASKING_MODE_PLANARFIGURE, MITK_DEBUG, and mitk::ImageTimeSelector::New().

Referenced by ComputeStatistics().

float mitk::PartialVolumeAnalysisHistogramCalculator::GetGaussianSigma ( )
inline

Get histogram number of bins.

Definition at line 191 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

const PartialVolumeAnalysisHistogramCalculator::HistogramType * mitk::PartialVolumeAnalysisHistogramCalculator::GetHistogram ( ) const

Retrieve the histogram depending on the current masking mode.

Definition at line 358 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References m_Image, m_ImageHistogram, m_MaskedImageHistogram, m_MaskingMode, m_PlanarFigureHistogram, MASKING_MODE_IMAGE, MASKING_MODE_NONE, and MASKING_MODE_PLANARFIGURE.

const Image::Pointer mitk::PartialVolumeAnalysisHistogramCalculator::GetInternalAdditionalResampledImage ( unsigned int  i)
inline

Definition at line 215 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

const Image::Pointer mitk::PartialVolumeAnalysisHistogramCalculator::GetInternalImage ( )
inline

Definition at line 210 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

virtual unsigned int mitk::PartialVolumeAnalysisHistogramCalculator::GetMaskingMode ( )
virtual

Set/Get operation mode for masking.

unsigned int mitk::PartialVolumeAnalysisHistogramCalculator::GetNumberOfBins ( )
inline

Get histogram number of bins.

Definition at line 148 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

unsigned int mitk::PartialVolumeAnalysisHistogramCalculator::GetPlanarFigureThickness ( )
inline

Get thickness of planar figure.

Definition at line 176 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

bool mitk::PartialVolumeAnalysisHistogramCalculator::GetPrincipalAxis ( const Geometry3D *  geometry,
Vector3D  vector,
unsigned int &  axis 
)
protected

If the passed vector matches any of the three principal axes of the passed geometry, the ínteger value corresponding to the axis is set and true is returned.

Definition at line 538 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References mitk::eps, and mitk::BaseGeometry::GetAxisVector().

const PartialVolumeAnalysisHistogramCalculator::Statistics & mitk::PartialVolumeAnalysisHistogramCalculator::GetStatistics ( ) const

Retrieve statistics depending on the current masking mode.

Definition at line 381 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References m_EmptyStatistics, m_Image, m_ImageStatistics, m_MaskedImageStatistics, m_MaskingMode, m_PlanarFigureStatistics, MASKING_MODE_IMAGE, MASKING_MODE_NONE, and MASKING_MODE_PLANARFIGURE.

float mitk::PartialVolumeAnalysisHistogramCalculator::GetUpsamplingFactor ( )
inline

Get upsampling factor.

Definition at line 162 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

template<typename TPixel , unsigned int VImageDimension>
void mitk::PartialVolumeAnalysisHistogramCalculator::InternalCalculateMaskFromPlanarFigure ( itk::Image< TPixel, VImageDimension > *  image,
unsigned int  axis 
)
protected

Definition at line 1009 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References ConnectPipelines(), mitk::PlaneGeometry::IndexToWorld(), mitk::BaseGeometry::IsInside(), m_CropRegion, m_InternalImage, m_InternalImageMask3D, m_PlanarFigure, m_PlanarFigureThickness, m_UpsamplingFactor, mitk::PlaneGeometry::Map(), max(), min(), MITK_DEBUG, mitk::New(), mitk::Image::New(), mitk::PlaneGeometry::WorldToIndex(), and mitk::BaseGeometry::WorldToIndex().

Referenced by ExtractImageAndMask().

template<typename TPixel , unsigned int VImageDimension>
void mitk::PartialVolumeAnalysisHistogramCalculator::InternalCalculateStatisticsMasked ( const itk::Image< TPixel, VImageDimension > *  image,
itk::Image< unsigned char, VImageDimension > *  maskImage,
Statistics &  statistics,
typename HistogramType::ConstPointer *  histogram 
)
protected

Definition at line 934 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References m_NumberOfBins, MITK_DEBUG, and mitk::New().

Referenced by ComputeStatistics().

template<typename TPixel , unsigned int VImageDimension>
void mitk::PartialVolumeAnalysisHistogramCalculator::InternalCalculateStatisticsUnmasked ( const itk::Image< TPixel, VImageDimension > *  image,
Statistics &  statistics,
typename HistogramType::ConstPointer *  histogram 
)
protected

Definition at line 870 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References m_NumberOfBins, mitk::PartialVolumeAnalysisHistogramCalculator::Statistics::Max, mitk::PartialVolumeAnalysisHistogramCalculator::Statistics::Mean, mitk::PartialVolumeAnalysisHistogramCalculator::Statistics::Median, mitk::PartialVolumeAnalysisHistogramCalculator::Statistics::Min, MITK_DEBUG, mitk::PartialVolumeAnalysisHistogramCalculator::Statistics::N, mitk::New(), mitk::PartialVolumeAnalysisHistogramCalculator::Statistics::RMS, mitk::PartialVolumeAnalysisHistogramCalculator::Statistics::Sigma, and UnmaskedStatisticsProgressUpdate().

Referenced by ComputeStatistics().

template<typename TPixel , unsigned int VImageDimension>
void mitk::PartialVolumeAnalysisHistogramCalculator::InternalCropAdditionalImage ( itk::Image< TPixel, VImageDimension > *  image,
int  additionalIndex 
)
protected

Definition at line 993 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References m_CropRegion, m_InternalAdditionalResamplingImages, mitk::New(), and mitk::Image::New().

Referenced by ExtractImageAndMask().

void mitk::PartialVolumeAnalysisHistogramCalculator::InternalMaskImage ( mitk::Image *  image)
protected

Definition at line 558 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References m_InternalImageMask3D, m_InternalMask3D, MITK_DEBUG, and mitk::New().

Referenced by ExtractImageAndMask().

template<typename TPixel , unsigned int VImageDimension>
void mitk::PartialVolumeAnalysisHistogramCalculator::InternalReorientImagePlane ( const itk::Image< TPixel, VImageDimension > *  image,
mitk::BaseGeometry *  imggeo,
mitk::BaseGeometry *  planegeo3D,
int  additionalIndex 
)
protected

Definition at line 600 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References mitk::BaseGeometry::GetExtentInMM(), mitk::BaseGeometry::GetIndexToWorldTransform(), mitk::BaseGeometry::GetOrigin(), mitk::BaseGeometry::GetSpacing(), mitk::BaseGeometry::IndexToWorld(), m_GaussianSigma, m_InternalAdditionalResamplingImages, m_InternalImage, m_PlanarFigureThickness, m_UpsamplingFactor, MITK_DEBUG, mitk::New(), mitk::Image::New(), and mitk::BaseGeometry::WorldToIndex().

Referenced by ExtractImageAndMask().

void mitk::PartialVolumeAnalysisHistogramCalculator::InternalResampleImage ( const MaskImage3DType *  image)
protected

Definition at line 822 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References m_InternalImageMask3D, m_UpsamplingFactor, and mitk::New().

Referenced by ExtractImageAndMask().

template<typename TPixel , unsigned int VImageDimension>
void mitk::PartialVolumeAnalysisHistogramCalculator::InternalResampleImageFromMask ( const itk::Image< TPixel, VImageDimension > *  image,
int  additionalIndex 
)
protected

Definition at line 742 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References m_GaussianSigma, m_InternalAdditionalResamplingImages, m_InternalImage, m_InternalImageMask3D, mitk::New(), and mitk::Image::New().

Referenced by ExtractImageAndMask().

void mitk::PartialVolumeAnalysisHistogramCalculator::MaskedStatisticsProgressUpdate ( )
protected

Definition at line 1265 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

mitk::PartialVolumeAnalysisHistogramCalculator::mitkClassMacroItkParent ( PartialVolumeAnalysisHistogramCalculator  ,
itk::Object   
)
void mitk::PartialVolumeAnalysisHistogramCalculator::SetForceUpdate ( bool  b)
inline

Definition at line 227 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

void mitk::PartialVolumeAnalysisHistogramCalculator::SetGaussianSigma ( float  number)
inline

Set gaussian sigma.

Definition at line 166 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

void mitk::PartialVolumeAnalysisHistogramCalculator::SetImage ( const mitk::Image *  image)

Set image from which to compute statistics.

Definition at line 92 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References m_Image, m_ImageStatisticsCalculationTriggerBool, and m_ImageStatisticsTimeStamp.

void mitk::PartialVolumeAnalysisHistogramCalculator::SetImageMask ( const mitk::Image *  imageMask)

Set binary image for masking.

Definition at line 123 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References mitk::BaseData::GetTimeSteps(), m_Image, m_ImageMask, m_MaskedImageStatisticsCalculationTriggerBool, and m_MaskedImageStatisticsTimeStamp.

void mitk::PartialVolumeAnalysisHistogramCalculator::SetMaskingMode ( unsigned int  mode)

Set/Get operation mode for masking.

Definition at line 164 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References m_MaskingMode, and m_MaskingModeChanged.

void mitk::PartialVolumeAnalysisHistogramCalculator::SetMaskingModeToImage ( )

Set/Get operation mode for masking.

Definition at line 186 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References m_MaskingMode, m_MaskingModeChanged, and MASKING_MODE_IMAGE.

void mitk::PartialVolumeAnalysisHistogramCalculator::SetMaskingModeToNone ( )

Set/Get operation mode for masking.

Definition at line 175 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References m_MaskingMode, m_MaskingModeChanged, and MASKING_MODE_NONE.

void mitk::PartialVolumeAnalysisHistogramCalculator::SetMaskingModeToPlanarFigure ( )

Set/Get operation mode for masking.

Definition at line 197 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References m_MaskingMode, m_MaskingModeChanged, and MASKING_MODE_PLANARFIGURE.

void mitk::PartialVolumeAnalysisHistogramCalculator::SetModified ( )

Definition at line 112 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References m_ImageStatisticsCalculationTriggerBool, m_ImageStatisticsTimeStamp, m_MaskedImageStatisticsCalculationTriggerBool, m_MaskedImageStatisticsTimeStamp, m_PlanarFigureStatisticsCalculationTriggerBool, and m_PlanarFigureStatisticsTimeStamp.

void mitk::PartialVolumeAnalysisHistogramCalculator::SetNumberOfBins ( unsigned int  number)
inline

Set histogram number of bins.

Definition at line 138 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

void mitk::PartialVolumeAnalysisHistogramCalculator::SetPlanarFigure ( const mitk::PlanarFigure *  planarFigure)

Set planar figure for masking.

Definition at line 146 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

References m_Image, m_PlanarFigure, m_PlanarFigureStatisticsCalculationTriggerBool, and m_PlanarFigureStatisticsTimeStamp.

void mitk::PartialVolumeAnalysisHistogramCalculator::SetPlanarFigureThickness ( unsigned int  number)
inline

Set thickness of planar figure.

Definition at line 181 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

void mitk::PartialVolumeAnalysisHistogramCalculator::SetUpsamplingFactor ( float  number)
inline

Set upsampling factor.

Definition at line 152 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

void mitk::PartialVolumeAnalysisHistogramCalculator::UnmaskedStatisticsProgressUpdate ( )
protected

Definition at line 1253 of file mitkPartialVolumeAnalysisHistogramCalculator.cpp.

Referenced by InternalCalculateStatisticsUnmasked().

Member Data Documentation

std::vector<mitk::Image::ConstPointer> mitk::PartialVolumeAnalysisHistogramCalculator::m_AdditionalResamplingImages
protected

Definition at line 357 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by AddAdditionalResamplingImage(), and ExtractImageAndMask().

itk::ImageRegion<3> mitk::PartialVolumeAnalysisHistogramCalculator::m_CropRegion
protected

Definition at line 374 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by InternalCalculateMaskFromPlanarFigure(), and InternalCropAdditionalImage().

HistogramType::Pointer mitk::PartialVolumeAnalysisHistogramCalculator::m_EmptyHistogram
protected

Definition at line 342 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by PartialVolumeAnalysisHistogramCalculator().

Statistics mitk::PartialVolumeAnalysisHistogramCalculator::m_EmptyStatistics
protected

Definition at line 348 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by GetStatistics(), and PartialVolumeAnalysisHistogramCalculator().

bool mitk::PartialVolumeAnalysisHistogramCalculator::m_ForceUpdate
protected

Definition at line 376 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ComputeStatistics().

float mitk::PartialVolumeAnalysisHistogramCalculator::m_GaussianSigma
protected

Definition at line 372 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by InternalReorientImagePlane(), and InternalResampleImageFromMask().

mitk::Image::ConstPointer mitk::PartialVolumeAnalysisHistogramCalculator::m_Image
protected

Definition at line 334 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ComputeStatistics(), ExtractImageAndMask(), GetHistogram(), GetStatistics(), SetImage(), SetImageMask(), and SetPlanarFigure().

HistogramType::ConstPointer mitk::PartialVolumeAnalysisHistogramCalculator::m_ImageHistogram
protected

Definition at line 338 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ComputeStatistics(), and GetHistogram().

mitk::Image::ConstPointer mitk::PartialVolumeAnalysisHistogramCalculator::m_ImageMask
protected

Definition at line 335 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ComputeStatistics(), ExtractImageAndMask(), and SetImageMask().

StatisticsType mitk::PartialVolumeAnalysisHistogramCalculator::m_ImageStatistics
protected

Definition at line 344 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ComputeStatistics(), and GetStatistics().

BoolType mitk::PartialVolumeAnalysisHistogramCalculator::m_ImageStatisticsCalculationTriggerBool
protected

Definition at line 364 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by AddAdditionalResamplingImage(), ComputeStatistics(), SetImage(), and SetModified().

TimeStampType mitk::PartialVolumeAnalysisHistogramCalculator::m_ImageStatisticsTimeStamp
protected

Definition at line 360 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by AddAdditionalResamplingImage(), ComputeStatistics(), SetImage(), and SetModified().

std::vector<mitk::Image::Pointer> mitk::PartialVolumeAnalysisHistogramCalculator::m_InternalAdditionalResamplingImages
protected

Definition at line 358 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ExtractImageAndMask(), InternalCropAdditionalImage(), InternalReorientImagePlane(), and InternalResampleImageFromMask().

mitk::Image::Pointer mitk::PartialVolumeAnalysisHistogramCalculator::m_InternalImage
protected

Definition at line 353 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ComputeStatistics(), ExtractImageAndMask(), InternalCalculateMaskFromPlanarFigure(), InternalReorientImagePlane(), and InternalResampleImageFromMask().

MaskImage2DType::Pointer mitk::PartialVolumeAnalysisHistogramCalculator::m_InternalImageMask2D
protected

Definition at line 355 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ComputeStatistics(), and ExtractImageAndMask().

MaskImage3DType::Pointer mitk::PartialVolumeAnalysisHistogramCalculator::m_InternalImageMask3D
protected

Definition at line 354 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ComputeStatistics(), ExtractImageAndMask(), InternalCalculateMaskFromPlanarFigure(), InternalMaskImage(), InternalResampleImage(), and InternalResampleImageFromMask().

itk::ImageRegion<3> mitk::PartialVolumeAnalysisHistogramCalculator::m_InternalMask3D
protected

Definition at line 356 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by InternalMaskImage().

HistogramType::ConstPointer mitk::PartialVolumeAnalysisHistogramCalculator::m_MaskedImageHistogram
protected

Definition at line 339 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ComputeStatistics(), and GetHistogram().

StatisticsType mitk::PartialVolumeAnalysisHistogramCalculator::m_MaskedImageStatistics
protected

Definition at line 345 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ComputeStatistics(), and GetStatistics().

BoolType mitk::PartialVolumeAnalysisHistogramCalculator::m_MaskedImageStatisticsCalculationTriggerBool
protected

Definition at line 365 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ComputeStatistics(), SetImageMask(), and SetModified().

TimeStampType mitk::PartialVolumeAnalysisHistogramCalculator::m_MaskedImageStatisticsTimeStamp
protected

Definition at line 361 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ComputeStatistics(), SetImageMask(), and SetModified().

unsigned int mitk::PartialVolumeAnalysisHistogramCalculator::m_MaskingMode
protected

Definition at line 350 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ComputeStatistics(), ExtractImageAndMask(), GetHistogram(), GetStatistics(), SetMaskingMode(), SetMaskingModeToImage(), SetMaskingModeToNone(), and SetMaskingModeToPlanarFigure().

bool mitk::PartialVolumeAnalysisHistogramCalculator::m_MaskingModeChanged
protected

Definition at line 351 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ComputeStatistics(), SetMaskingMode(), SetMaskingModeToImage(), SetMaskingModeToNone(), and SetMaskingModeToPlanarFigure().

unsigned int mitk::PartialVolumeAnalysisHistogramCalculator::m_NumberOfBins
protected

Definition at line 368 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by InternalCalculateStatisticsMasked(), and InternalCalculateStatisticsUnmasked().

mitk::PlanarFigure::ConstPointer mitk::PartialVolumeAnalysisHistogramCalculator::m_PlanarFigure
protected

Definition at line 336 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ComputeStatistics(), ExtractImageAndMask(), InternalCalculateMaskFromPlanarFigure(), and SetPlanarFigure().

HistogramType::ConstPointer mitk::PartialVolumeAnalysisHistogramCalculator::m_PlanarFigureHistogram
protected

Definition at line 340 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ComputeStatistics(), and GetHistogram().

StatisticsType mitk::PartialVolumeAnalysisHistogramCalculator::m_PlanarFigureStatistics
protected

Definition at line 346 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ComputeStatistics(), and GetStatistics().

BoolType mitk::PartialVolumeAnalysisHistogramCalculator::m_PlanarFigureStatisticsCalculationTriggerBool
protected

Definition at line 366 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ComputeStatistics(), SetModified(), and SetPlanarFigure().

TimeStampType mitk::PartialVolumeAnalysisHistogramCalculator::m_PlanarFigureStatisticsTimeStamp
protected

Definition at line 362 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ComputeStatistics(), SetModified(), and SetPlanarFigure().

unsigned int mitk::PartialVolumeAnalysisHistogramCalculator::m_PlanarFigureThickness
protected

Definition at line 378 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by InternalCalculateMaskFromPlanarFigure(), and InternalReorientImagePlane().

float mitk::PartialVolumeAnalysisHistogramCalculator::m_UpsamplingFactor
protected

Definition at line 370 of file mitkPartialVolumeAnalysisHistogramCalculator.h.

Referenced by ExtractImageAndMask(), InternalCalculateMaskFromPlanarFigure(), InternalReorientImagePlane(), and InternalResampleImage().

The documentation for this class was generated from the following files: