itk::ShCoefficientImageImporter< PixelType, ShOrder > Class Template Reference

#include <itkShCoefficientImageImporter.h>

Inheritance diagram for itk::ShCoefficientImageImporter< PixelType, ShOrder >:

Collaboration diagram for itk::ShCoefficientImageImporter< PixelType, ShOrder >:

Public Types
enum	NormalizationMethods { NO_NORM, SINGLE_VEC_NORM, SPACING_COMPENSATION }
enum	Toolkit { FSL, MRTRIX }
typedef ShCoefficientImageImporter	Self
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef ProcessObject	Superclass
typedef itk::Image< float, 4 >	InputImageType
typedef Image< Vector< PixelType,(ShOrder *ShOrder+ShOrder+2)/2+ShOrder >, 3 >	CoefficientImageType
typedef Image< Vector< PixelType, QBALL_ODFSIZE >, 3 >	QballImageType

Public Member Functions
Pointer	Clone () const
virtual const char *	GetClassName () const
virtual void	SetInputImage (InputImageType::Pointer _arg)
	sh coefficient image in FSL file format More...
virtual CoefficientImageType::Pointer	GetCoefficientImage ()
	mitk style image containing the SH coefficients More...
virtual QballImageType::Pointer	GetQballImage ()
	mitk Q-Ball image generated from the coefficients More...
virtual void	SetToolkit (Toolkit _arg)
	define SH coefficient convention (depends on toolkit) More...
virtual Toolkit	GetToolkit ()
	SH coefficient convention (depends on toolkit) More...
void	GenerateData () override

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	ShCoefficientImageImporter ()
	~ShCoefficientImageImporter ()
void	CalcShBasis ()
vnl_matrix_fixed< double, 2, QBALL_ODFSIZE >	GetSphericalOdfDirections ()

Protected Attributes
InputImageType::Pointer	m_InputImage
CoefficientImageType::Pointer	m_CoefficientImage
	mitk style image containing the SH coefficients More...
QballImageType::Pointer	m_QballImage
	mitk Q-Ball image generated from the coefficients More...
vnl_matrix< double >	m_ShBasis
Toolkit	m_Toolkit

Detailed Description

template<class PixelType, int ShOrder>
class itk::ShCoefficientImageImporter< PixelType, ShOrder >

Converts FSL reconstructions of diffusionweighted images (4D images containing the sh coefficients) to qball images or 3D sh-coefficient images.

Definition at line 28 of file itkShCoefficientImageImporter.h.

Member Typedef Documentation

template<class PixelType , int ShOrder>

typedef Image< Vector< PixelType, (ShOrder*ShOrder + ShOrder + 2)/2 + ShOrder >, 3 > itk::ShCoefficientImageImporter< PixelType, ShOrder >::CoefficientImageType

Definition at line 49 of file itkShCoefficientImageImporter.h.

template<class PixelType , int ShOrder>

typedef SmartPointer<const Self> itk::ShCoefficientImageImporter< PixelType, ShOrder >::ConstPointer

Definition at line 46 of file itkShCoefficientImageImporter.h.

template<class PixelType , int ShOrder>

typedef itk::Image< float, 4 > itk::ShCoefficientImageImporter< PixelType, ShOrder >::InputImageType

Definition at line 48 of file itkShCoefficientImageImporter.h.

template<class PixelType , int ShOrder>

typedef SmartPointer<Self> itk::ShCoefficientImageImporter< PixelType, ShOrder >::Pointer

Definition at line 45 of file itkShCoefficientImageImporter.h.

template<class PixelType , int ShOrder>

typedef Image< Vector< PixelType, QBALL_ODFSIZE >, 3 > itk::ShCoefficientImageImporter< PixelType, ShOrder >::QballImageType

Definition at line 50 of file itkShCoefficientImageImporter.h.

template<class PixelType , int ShOrder>

typedef ShCoefficientImageImporter itk::ShCoefficientImageImporter< PixelType, ShOrder >::Self

Definition at line 44 of file itkShCoefficientImageImporter.h.

template<class PixelType , int ShOrder>

typedef ProcessObject itk::ShCoefficientImageImporter< PixelType, ShOrder >::Superclass

Definition at line 47 of file itkShCoefficientImageImporter.h.

Member Enumeration Documentation

template<class PixelType , int ShOrder>

enum itk::ShCoefficientImageImporter::NormalizationMethods

Enumerator
NO_NORM
SINGLE_VEC_NORM
SPACING_COMPENSATION

Definition at line 33 of file itkShCoefficientImageImporter.h.

template<class PixelType , int ShOrder>

enum itk::ShCoefficientImageImporter::Toolkit

Enumerator
FSL	SH coefficient convention (depends on toolkit)
MRTRIX

Definition at line 39 of file itkShCoefficientImageImporter.h.

Constructor & Destructor Documentation

template<class PixelType , int ShOrder>

itk::ShCoefficientImageImporter< PixelType, ShOrder >::ShCoefficientImageImporter ( )

protected

Definition at line 32 of file itkShCoefficientImageImporter.cpp.

References itk::ShCoefficientImageImporter< PixelType, ShOrder >::m_ShBasis, and QBALL_ODFSIZE.

template<class PixelType , int ShOrder>

itk::ShCoefficientImageImporter< PixelType, ShOrder >::~ShCoefficientImageImporter ( )

inlineprotected

Definition at line 73 of file itkShCoefficientImageImporter.h.

Member Function Documentation

template<class PixelType , int ShOrder>

void itk::ShCoefficientImageImporter< PixelType, ShOrder >::CalcShBasis ( )

protected

Definition at line 124 of file itkShCoefficientImageImporter.cpp.

References M_PI, and QBALL_ODFSIZE.

template<class PixelType , int ShOrder>

Pointer itk::ShCoefficientImageImporter< PixelType, ShOrder >::Clone

(

)

const

template<class PixelType , int ShOrder>

void itk::ShCoefficientImageImporter< PixelType, ShOrder >::GenerateData ( )

override

Definition at line 40 of file itkShCoefficientImageImporter.cpp.

References M_PI, mitk::New(), and QBALL_ODFSIZE.

template<class PixelType , int ShOrder>

virtual const char* itk::ShCoefficientImageImporter< PixelType, ShOrder >::GetClassName ( ) const

virtual

Runtime information support.

template<class PixelType , int ShOrder>

virtual CoefficientImageType::Pointer itk::ShCoefficientImageImporter< PixelType, ShOrder >::GetCoefficientImage ( )

virtual

mitk style image containing the SH coefficients

template<class PixelType , int ShOrder>

virtual QballImageType::Pointer itk::ShCoefficientImageImporter< PixelType, ShOrder >::GetQballImage ( )

virtual

mitk Q-Ball image generated from the coefficients

template<class PixelType , int ShOrder>

vnl_matrix_fixed< double, 2, QBALL_ODFSIZE > itk::ShCoefficientImageImporter< PixelType, ShOrder >::GetSphericalOdfDirections ( )

protected

Definition at line 167 of file itkShCoefficientImageImporter.cpp.

References mitk::eps, itk::OrientationDistributionFunction< TComponent, NOdfDirections >::GetDirections(), M_PI, and QBALL_ODFSIZE.

template<class PixelType , int ShOrder>

virtual Toolkit itk::ShCoefficientImageImporter< PixelType, ShOrder >::GetToolkit ( )

virtual

SH coefficient convention (depends on toolkit)

template<class PixelType , int ShOrder>

static Pointer itk::ShCoefficientImageImporter< PixelType, ShOrder >::New ( )

static

Method for creation through the object factory.

template<class PixelType , int ShOrder>

virtual void itk::ShCoefficientImageImporter< PixelType, ShOrder >::SetInputImage ( InputImageType::Pointer  _arg )

virtual

sh coefficient image in FSL file format

template<class PixelType , int ShOrder>

virtual void itk::ShCoefficientImageImporter< PixelType, ShOrder >::SetToolkit ( Toolkit  _arg )

virtual

define SH coefficient convention (depends on toolkit)

Member Data Documentation

template<class PixelType , int ShOrder>

CoefficientImageType::Pointer itk::ShCoefficientImageImporter< PixelType, ShOrder >::m_CoefficientImage

protected

mitk style image containing the SH coefficients

Definition at line 79 of file itkShCoefficientImageImporter.h.

template<class PixelType , int ShOrder>

InputImageType::Pointer itk::ShCoefficientImageImporter< PixelType, ShOrder >::m_InputImage

protected

Definition at line 78 of file itkShCoefficientImageImporter.h.

template<class PixelType , int ShOrder>

QballImageType::Pointer itk::ShCoefficientImageImporter< PixelType, ShOrder >::m_QballImage

protected

mitk Q-Ball image generated from the coefficients

Definition at line 80 of file itkShCoefficientImageImporter.h.

template<class PixelType , int ShOrder>

vnl_matrix<double> itk::ShCoefficientImageImporter< PixelType, ShOrder >::m_ShBasis

protected

Definition at line 81 of file itkShCoefficientImageImporter.h.

Referenced by itk::ShCoefficientImageImporter< PixelType, ShOrder >::ShCoefficientImageImporter().

template<class PixelType , int ShOrder>

Toolkit itk::ShCoefficientImageImporter< PixelType, ShOrder >::m_Toolkit

protected

Definition at line 82 of file itkShCoefficientImageImporter.h.

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The documentation for this class was generated from the following files:

• itkShCoefficientImageImporter.h
• itkShCoefficientImageImporter.cpp