#include <itkMrtrixPeakImageConverter.h>

Inheritance diagram for itk::MrtrixPeakImageConverter< PixelType >:

Collaboration diagram for itk::MrtrixPeakImageConverter< PixelType >:

Public Types
enum	NormalizationMethods { NO_NORM, SINGLE_VEC_NORM }

typedef MrtrixPeakImageConverter	Self

typedef SmartPointer< Self >	Pointer

typedef SmartPointer< const Self >	ConstPointer

typedef ProcessObject	Superclass

typedef vnl_vector_fixed< double, 3 >	DirectionType

typedef VectorContainer< int, DirectionType >	DirectionContainerType

typedef VectorContainer< int, DirectionContainerType::Pointer >	ContainerType

typedef Image< float, 4 >	InputImageType

typedef Image< Vector< float, 3 >, 3 >	ItkDirectionImageType

typedef VectorContainer< int, ItkDirectionImageType::Pointer >	DirectionImageContainerType

typedef itk::Image< unsigned char, 3 >	ItkUcharImgType

Public Member Functions
Pointer	Clone () const

virtual const char *	GetClassName () const

virtual void	SetNormalizationMethod (NormalizationMethods _arg)
	normalization method of ODF peaks More...

virtual void	SetInputImage (InputImageType::Pointer _arg)
	MRtrix direction image of type itk::Image< float, 4 > More...

virtual mitk::FiberBundle::Pointer	GetOutputFiberBundle ()
	vector field (peak sizes rescaled for visualization purposes) More...

virtual DirectionImageContainerType::Pointer	GetDirectionImageContainer ()
	container for output peaks More...

virtual ItkUcharImgType::Pointer	GetNumDirectionsImage ()
	number of peaks per voxel More...

void	GenerateData () override

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	MrtrixPeakImageConverter ()

	~MrtrixPeakImageConverter ()

Protected Attributes
NormalizationMethods	m_NormalizationMethod
	normalization method of ODF peaks More...

mitk::FiberBundle::Pointer	m_OutputFiberBundle
	vector field (peak sizes rescaled for visualization purposes) More...

InputImageType::Pointer	m_InputImage
	MRtrix direction image of type itk::Image< float, 4 > More...

DirectionImageContainerType::Pointer	m_DirectionImageContainer
	container for output peaks More...

ItkUcharImgType::Pointer	m_NumDirectionsImage
	number of peaks per voxel More...

Detailed Description

template<class PixelType>
class itk::MrtrixPeakImageConverter< PixelType >

Converts a series of 4D images containing directional (3D vector) information into a vector field stored as mitkFiberBundle. These 4D files are for example generated by the FSL qboot command.

Definition at line 32 of file itkMrtrixPeakImageConverter.h.

Member Typedef Documentation

template<class PixelType >

typedef SmartPointer<const Self> itk::MrtrixPeakImageConverter< PixelType >::ConstPointer

Definition at line 44 of file itkMrtrixPeakImageConverter.h.

template<class PixelType >

typedef VectorContainer< int, DirectionContainerType::Pointer > itk::MrtrixPeakImageConverter< PixelType >::ContainerType

Definition at line 56 of file itkMrtrixPeakImageConverter.h.

template<class PixelType >

typedef VectorContainer< int, DirectionType > itk::MrtrixPeakImageConverter< PixelType >::DirectionContainerType

Definition at line 55 of file itkMrtrixPeakImageConverter.h.

template<class PixelType >

typedef VectorContainer< int, ItkDirectionImageType::Pointer > itk::MrtrixPeakImageConverter< PixelType >::DirectionImageContainerType

Definition at line 59 of file itkMrtrixPeakImageConverter.h.

template<class PixelType >

typedef vnl_vector_fixed< double, 3 > itk::MrtrixPeakImageConverter< PixelType >::DirectionType

Definition at line 54 of file itkMrtrixPeakImageConverter.h.

template<class PixelType >

typedef Image< float, 4 > itk::MrtrixPeakImageConverter< PixelType >::InputImageType

Definition at line 57 of file itkMrtrixPeakImageConverter.h.

template<class PixelType >

typedef Image< Vector< float, 3 >, 3> itk::MrtrixPeakImageConverter< PixelType >::ItkDirectionImageType

Definition at line 58 of file itkMrtrixPeakImageConverter.h.

template<class PixelType >

typedef itk::Image<unsigned char, 3> itk::MrtrixPeakImageConverter< PixelType >::ItkUcharImgType

Definition at line 60 of file itkMrtrixPeakImageConverter.h.

template<class PixelType >

typedef SmartPointer<Self> itk::MrtrixPeakImageConverter< PixelType >::Pointer

Definition at line 43 of file itkMrtrixPeakImageConverter.h.

template<class PixelType >

typedef MrtrixPeakImageConverter itk::MrtrixPeakImageConverter< PixelType >::Self

Definition at line 42 of file itkMrtrixPeakImageConverter.h.

template<class PixelType >

typedef ProcessObject itk::MrtrixPeakImageConverter< PixelType >::Superclass

Definition at line 45 of file itkMrtrixPeakImageConverter.h.

Member Enumeration Documentation

template<class PixelType >

enum itk::MrtrixPeakImageConverter::NormalizationMethods

Enumerator
NO_NORM	don't normalize peaks
SINGLE_VEC_NORM	normalize peaks to length 1

Definition at line 37 of file itkMrtrixPeakImageConverter.h.

Constructor & Destructor Documentation

template<class PixelType >

itk::MrtrixPeakImageConverter< PixelType >::MrtrixPeakImageConverter ( )

protected

Definition at line 39 of file itkMrtrixPeakImageConverter.cpp.

template<class PixelType >

itk::MrtrixPeakImageConverter< PixelType >::~MrtrixPeakImageConverter ( )

inlineprotected

Definition at line 72 of file itkMrtrixPeakImageConverter.h.

Member Function Documentation

template<class PixelType >

Pointer itk::MrtrixPeakImageConverter< PixelType >::Clone ( ) const

template<class PixelType >

void itk::MrtrixPeakImageConverter< PixelType >::GenerateData ( )

override

Definition at line 47 of file itkMrtrixPeakImageConverter.cpp.

References M_PI, MITK_INFO, and mitk::New().

template<class PixelType >

virtual const char* itk::MrtrixPeakImageConverter< PixelType >::GetClassName ( ) const

virtual

Runtime information support.

template<class PixelType >

virtual DirectionImageContainerType::Pointer itk::MrtrixPeakImageConverter< PixelType >::GetDirectionImageContainer ( )

virtual

container for output peaks

template<class PixelType >

virtual ItkUcharImgType::Pointer itk::MrtrixPeakImageConverter< PixelType >::GetNumDirectionsImage ( )

virtual

number of peaks per voxel

template<class PixelType >

virtual mitk::FiberBundle::Pointer itk::MrtrixPeakImageConverter< PixelType >::GetOutputFiberBundle ( )

virtual

vector field (peak sizes rescaled for visualization purposes)

template<class PixelType >

static Pointer itk::MrtrixPeakImageConverter< PixelType >::New ( )

static

Method for creation through the object factory.

template<class PixelType >

virtual void itk::MrtrixPeakImageConverter< PixelType >::SetInputImage ( InputImageType::Pointer _arg )

virtual

MRtrix direction image of type itk::Image< float, 4 >

template<class PixelType >

virtual void itk::MrtrixPeakImageConverter< PixelType >::SetNormalizationMethod ( NormalizationMethods _arg )

virtual

normalization method of ODF peaks

Member Data Documentation

template<class PixelType >

DirectionImageContainerType::Pointer itk::MrtrixPeakImageConverter< PixelType >::m_DirectionImageContainer

protected

container for output peaks

Definition at line 77 of file itkMrtrixPeakImageConverter.h.

template<class PixelType >

InputImageType::Pointer itk::MrtrixPeakImageConverter< PixelType >::m_InputImage

protected

MRtrix direction image of type itk::Image< float, 4 >

Definition at line 76 of file itkMrtrixPeakImageConverter.h.

template<class PixelType >

NormalizationMethods itk::MrtrixPeakImageConverter< PixelType >::m_NormalizationMethod

protected

normalization method of ODF peaks

Definition at line 74 of file itkMrtrixPeakImageConverter.h.

template<class PixelType >

ItkUcharImgType::Pointer itk::MrtrixPeakImageConverter< PixelType >::m_NumDirectionsImage

protected

number of peaks per voxel

Definition at line 78 of file itkMrtrixPeakImageConverter.h.

template<class PixelType >

mitk::FiberBundle::Pointer itk::MrtrixPeakImageConverter< PixelType >::m_OutputFiberBundle

protected

vector field (peak sizes rescaled for visualization purposes)

Definition at line 75 of file itkMrtrixPeakImageConverter.h.

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Detailed Description

template<class PixelType> class itk::MrtrixPeakImageConverter< PixelType >

Member Typedef Documentation

Member Enumeration Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<class PixelType>
class itk::MrtrixPeakImageConverter< PixelType >