itk::ExtendedStatisticsImageFilter< TInputImage > Class Template Reference

Extension of the itkStatisticsImageFilter that also calculates the Skewness and Kurtosis. More...

#include <mitkExtendedStatisticsImageFilter.h>

Inheritance diagram for itk::ExtendedStatisticsImageFilter< TInputImage >:

Collaboration diagram for itk::ExtendedStatisticsImageFilter< TInputImage >:

Public Types
typedef ExtendedStatisticsImageFilter	Self
typedef StatisticsImageFilter< TInputImage >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::RealType	RealType
typedef Superclass::RealObjectType	RealObjectType
typedef Superclass::PixelType	PixelType
typedef itk::Statistics::Histogram< RealType >	HistogramType
typedef HistogramType::Pointer	HistogramPointer
typedef ExtendedStatisticsImageFilter	Self
typedef StatisticsImageFilter< TInputImage >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::RealType	RealType
typedef Superclass::RealObjectType	RealObjectType
typedef Superclass::PixelType	PixelType
typedef itk::Statistics::ScalarImageToHistogramGenerator< TInputImage >	HistogramGeneratorType

Public Member Functions
Pointer	Clone () const
virtual const char *	GetClassName () const
double	GetSkewness () const
	Return the computed Skewness. More...
double	GetMedian () const
	Return the computed Median. More...
double	GetKurtosis () const
	Return the computed Kurtosis. More...
double	GetMPP () const
double	GetUniformity () const
	Return the computed Uniformity. More...
double	GetEntropy () const
	Return the computed Entropy. More...
double	GetUPP () const
	Return the computed UPP. More...
const HistogramType::Pointer	GetHistogram ()
	Return the computed Histogram. More...
void	SetHistogramParameters (const int numBins, RealType lowerBound, RealType upperBound)
Pointer	Clone () const
virtual const char *	GetClassName () const
double	GetSkewness () const
	Return the computed Skewness. More...
double	GetMedian () const
	Return the computed Median. More...
double	GetKurtosis () const
	Return the computed Kurtosis. More...
double	GetMPP () const
double	GetUniformity () const
	Return the computed Uniformity. More...
double	GetEntropy () const
	Return the computed Entropy. More...
double	GetUPP () const
	Return the computed UPP. More...
const HistogramGeneratorType::HistogramType *	GetHistogram ()
	Return the computed Histogram. More...
void	SetBinSize (int size)
	Set the Binsize for the Histogram. More...

Static Public Member Functions
static Pointer	New ()
static Pointer	New ()

Protected Member Functions
	ExtendedStatisticsImageFilter ()
virtual	~ExtendedStatisticsImageFilter ()
void	BeforeThreadedGenerateData ()
void	ThreadedGenerateData (const typename StatisticsImageFilter< TInputImage >::RegionType &outputRegionForThread, ThreadIdType threadId)
void	AfterThreadedGenerateData ()
RealObjectType *	GetSkewnessOutput ()
const RealObjectType *	GetSkewnessOutput () const
RealObjectType *	GetKurtosisOutput ()
const RealObjectType *	GetKurtosisOutput () const
RealObjectType *	GetMPPOutput ()
const RealObjectType *	GetMPPOutput () const
RealObjectType *	GetEntropyOutput ()
const RealObjectType *	GetEntropyOutput () const
RealObjectType *	GetUniformityOutput ()
const RealObjectType *	GetUniformityOutput () const
RealObjectType *	GetUPPOutput ()
const RealObjectType *	GetUPPOutput () const
RealObjectType *	GetMedianOutput ()
const RealObjectType *	GetMedianOutput () const
virtual DataObject::Pointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx)
	ExtendedStatisticsImageFilter ()
virtual	~ExtendedStatisticsImageFilter ()
void	AfterThreadedGenerateData ()
void	CalculateHistogram ()
void	ComputeSkewnessKurtosisAndMPP ()
	Compute Entropy,uniformity,MPP,UPP, Median. More...
void	ComputeEntropyUniformityMedianAndUPP ()
RealObjectType *	GetSkewnessOutput ()
const RealObjectType *	GetSkewnessOutput () const
RealObjectType *	GetKurtosisOutput ()
const RealObjectType *	GetKurtosisOutput () const
RealObjectType *	GetMPPOutput ()
const RealObjectType *	GetMPPOutput () const
RealObjectType *	GetEntropyOutput ()
const RealObjectType *	GetEntropyOutput () const
RealObjectType *	GetUniformityOutput ()
const RealObjectType *	GetUniformityOutput () const
RealObjectType *	GetUPPOutput ()
const RealObjectType *	GetUPPOutput () const
RealObjectType *	GetMedianOutput ()
const RealObjectType *	GetMedianOutput () const
virtual DataObject::Pointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx)

Protected Attributes
HistogramGeneratorType::Pointer	m_HistogramGenerator
	Histogram. More...
int	m_BinSize

Detailed Description

template<class TInputImage>
class itk::ExtendedStatisticsImageFilter< TInputImage >

Extension of the itkStatisticsImageFilter that also calculates the Skewness and Kurtosis.

This class inherits from the itkStatisticsImageFilter and uses its results for the calculation of other additional coefficients: the Skewness and Kurtosis.

As the StatisticsImageFilter stores the statistics in the outputs 1 to 6 by the StatisticsImageFilter, the skewness, kurtosis, MPP, UPP, Uniformity, Entropy and Median are stored in the outputs 7 to 14 by this filter.

This class inherits from the itkStatisticsImageFilter and uses its results for the calculation of other additional coefficients: the Skewness and Kurtosis.

As these coefficient are based on the mean and the sigma which are both calculated by the StatisticsImageFilter, the method AfterThreadedGenerateData() is overwritten and calls ComputeSkewnessKurtosisAndMPP() and ComputeEntropyUniformityAndUPP after the AfterThreadedGenerateData() implementation of the superclass is called.

As the StatisticsImageFilter stores the statistics in the outputs 1 to 6 by the StatisticsImageFilter, the skewness, kurtosis,MPP,UPP,Uniformity and Entropy are stored in the outputs 7 to 13 by this filter.

Definition at line 38 of file mitkExtendedStatisticsImageFilter.h.

Member Typedef Documentation

template<class TInputImage >

typedef SmartPointer< const Self > itk::ExtendedStatisticsImageFilter< TInputImage >::ConstPointer

Definition at line 45 of file mitkExtendedStatisticsImageFilter.h.

template<class TInputImage >

typedef SmartPointer< const Self > itk::ExtendedStatisticsImageFilter< TInputImage >::ConstPointer

Definition at line 52 of file old/mitkExtendedStatisticsImageFilter.h.

template<class TInputImage >

typedef itk::Statistics::ScalarImageToHistogramGenerator< TInputImage > itk::ExtendedStatisticsImageFilter< TInputImage >::HistogramGeneratorType

Definition at line 59 of file old/mitkExtendedStatisticsImageFilter.h.

template<class TInputImage >

typedef HistogramType::Pointer itk::ExtendedStatisticsImageFilter< TInputImage >::HistogramPointer

Definition at line 52 of file mitkExtendedStatisticsImageFilter.h.

template<class TInputImage >

typedef itk::Statistics::Histogram< RealType > itk::ExtendedStatisticsImageFilter< TInputImage >::HistogramType

Histogram-related typedefs

Definition at line 51 of file mitkExtendedStatisticsImageFilter.h.

template<class TInputImage >

typedef Superclass::PixelType itk::ExtendedStatisticsImageFilter< TInputImage >::PixelType

Definition at line 48 of file mitkExtendedStatisticsImageFilter.h.

template<class TInputImage >

typedef Superclass::PixelType itk::ExtendedStatisticsImageFilter< TInputImage >::PixelType

Definition at line 55 of file old/mitkExtendedStatisticsImageFilter.h.

template<class TInputImage >

typedef SmartPointer< Self > itk::ExtendedStatisticsImageFilter< TInputImage >::Pointer

Definition at line 44 of file mitkExtendedStatisticsImageFilter.h.

template<class TInputImage >

typedef SmartPointer< Self > itk::ExtendedStatisticsImageFilter< TInputImage >::Pointer

Definition at line 51 of file old/mitkExtendedStatisticsImageFilter.h.

template<class TInputImage >

typedef Superclass::RealObjectType itk::ExtendedStatisticsImageFilter< TInputImage >::RealObjectType

Definition at line 47 of file mitkExtendedStatisticsImageFilter.h.

template<class TInputImage >

typedef Superclass::RealObjectType itk::ExtendedStatisticsImageFilter< TInputImage >::RealObjectType

Definition at line 54 of file old/mitkExtendedStatisticsImageFilter.h.

template<class TInputImage >

typedef Superclass::RealType itk::ExtendedStatisticsImageFilter< TInputImage >::RealType

Definition at line 46 of file mitkExtendedStatisticsImageFilter.h.

template<class TInputImage >

typedef Superclass::RealType itk::ExtendedStatisticsImageFilter< TInputImage >::RealType

Definition at line 53 of file old/mitkExtendedStatisticsImageFilter.h.

template<class TInputImage >

typedef ExtendedStatisticsImageFilter itk::ExtendedStatisticsImageFilter< TInputImage >::Self

Standard Self typedef

Definition at line 42 of file mitkExtendedStatisticsImageFilter.h.

template<class TInputImage >

typedef ExtendedStatisticsImageFilter itk::ExtendedStatisticsImageFilter< TInputImage >::Self

Standard Self typedef

Definition at line 49 of file old/mitkExtendedStatisticsImageFilter.h.

template<class TInputImage >

typedef StatisticsImageFilter< TInputImage > itk::ExtendedStatisticsImageFilter< TInputImage >::Superclass

Definition at line 43 of file mitkExtendedStatisticsImageFilter.h.

template<class TInputImage >

typedef StatisticsImageFilter< TInputImage > itk::ExtendedStatisticsImageFilter< TInputImage >::Superclass

Definition at line 50 of file old/mitkExtendedStatisticsImageFilter.h.

Constructor & Destructor Documentation

template<class TInputImage >

itk::ExtendedStatisticsImageFilter< TInputImage >::ExtendedStatisticsImageFilter ( )

protected

template<class TInputImage >

virtual itk::ExtendedStatisticsImageFilter< TInputImage >::~ExtendedStatisticsImageFilter ( )

inlineprotectedvirtual

Definition at line 139 of file mitkExtendedStatisticsImageFilter.h.

template<class TInputImage >

itk::ExtendedStatisticsImageFilter< TInputImage >::ExtendedStatisticsImageFilter ( )

protected

template<class TInputImage >

virtual itk::ExtendedStatisticsImageFilter< TInputImage >::~ExtendedStatisticsImageFilter ( )

inlineprotectedvirtual

Definition at line 139 of file old/mitkExtendedStatisticsImageFilter.h.

Member Function Documentation

template<class TInputImage >

void itk::ExtendedStatisticsImageFilter< TInputImage >::AfterThreadedGenerateData ( )

protected

brief Calls AfterThreadedGenerateData() of the superclass and the main methods

template<class TInputImage >

void itk::ExtendedStatisticsImageFilter< TInputImage >::AfterThreadedGenerateData ( )

protected

brief Calls AfterThreadedGenerateData() of the superclass and the main methods

template<class TInputImage >

void itk::ExtendedStatisticsImageFilter< TInputImage >::BeforeThreadedGenerateData ( )

protected

template<class TInputImage >

void itk::ExtendedStatisticsImageFilter< TInputImage >::CalculateHistogram ( )

protected

template<class TInputImage >

Pointer itk::ExtendedStatisticsImageFilter< TInputImage >::Clone

(

)

const

template<class TInputImage >

Pointer itk::ExtendedStatisticsImageFilter< TInputImage >::Clone

(

)

const

template<class TInputImage >

void itk::ExtendedStatisticsImageFilter< TInputImage >::ComputeEntropyUniformityMedianAndUPP ( )

protected

template<class TInputImage >

void itk::ExtendedStatisticsImageFilter< TInputImage >::ComputeSkewnessKurtosisAndMPP ( )

protected

Compute Entropy,uniformity,MPP,UPP, Median.

The Entropy,uniformity,MPP, Median and UPP will be calculated with the Sigma, Histogram and Mean Value of the itkStatisticsImageFilter which comes out of the threadedGenerateData().

template<class TInputImage >

virtual const char* itk::ExtendedStatisticsImageFilter< TInputImage >::GetClassName ( ) const

virtual

template<class TInputImage >

virtual const char* itk::ExtendedStatisticsImageFilter< TInputImage >::GetClassName ( ) const

virtual

template<class TInputImage >

double itk::ExtendedStatisticsImageFilter< TInputImage >::GetEntropy ( ) const

inline

Return the computed Entropy.

Definition at line 100 of file mitkExtendedStatisticsImageFilter.h.

References itk::ExtendedStatisticsImageFilter< TInputImage >::GetEntropyOutput().

template<class TInputImage >

double itk::ExtendedStatisticsImageFilter< TInputImage >::GetEntropy ( ) const

inline

Return the computed Entropy.

Definition at line 107 of file old/mitkExtendedStatisticsImageFilter.h.

References itk::ExtendedStatisticsImageFilter< TInputImage >::GetEntropyOutput().

template<class TInputImage >

RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetEntropyOutput ( )

protected

Referenced by itk::ExtendedStatisticsImageFilter< TInputImage >::GetEntropy().

template<class TInputImage >

const RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetEntropyOutput ( ) const

protected

template<class TInputImage >

RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetEntropyOutput ( )

protected

template<class TInputImage >

const RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetEntropyOutput ( ) const

protected

template<class TInputImage >

const HistogramType::Pointer itk::ExtendedStatisticsImageFilter< TInputImage >::GetHistogram ( )

inline

Return the computed Histogram.

Definition at line 118 of file mitkExtendedStatisticsImageFilter.h.

template<class TInputImage >

const HistogramGeneratorType::HistogramType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetHistogram ( )

inline

Return the computed Histogram.

Definition at line 125 of file old/mitkExtendedStatisticsImageFilter.h.

References itk::ExtendedStatisticsImageFilter< TInputImage >::m_HistogramGenerator.

template<class TInputImage >

double itk::ExtendedStatisticsImageFilter< TInputImage >::GetKurtosis ( ) const

inline

Return the computed Kurtosis.

Definition at line 77 of file mitkExtendedStatisticsImageFilter.h.

References itk::ExtendedStatisticsImageFilter< TInputImage >::GetKurtosisOutput().

template<class TInputImage >

double itk::ExtendedStatisticsImageFilter< TInputImage >::GetKurtosis ( ) const

inline

Return the computed Kurtosis.

Definition at line 84 of file old/mitkExtendedStatisticsImageFilter.h.

References itk::ExtendedStatisticsImageFilter< TInputImage >::GetKurtosisOutput().

template<class TInputImage >

RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetKurtosisOutput ( )

protected

Referenced by itk::ExtendedStatisticsImageFilter< TInputImage >::GetKurtosis().

template<class TInputImage >

const RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetKurtosisOutput ( ) const

protected

template<class TInputImage >

RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetKurtosisOutput ( )

protected

template<class TInputImage >

const RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetKurtosisOutput ( ) const

protected

template<class TInputImage >

double itk::ExtendedStatisticsImageFilter< TInputImage >::GetMedian ( ) const

inline

Return the computed Median.

Definition at line 69 of file mitkExtendedStatisticsImageFilter.h.

References itk::ExtendedStatisticsImageFilter< TInputImage >::GetMedianOutput().

template<class TInputImage >

double itk::ExtendedStatisticsImageFilter< TInputImage >::GetMedian ( ) const

inline

Return the computed Median.

Definition at line 76 of file old/mitkExtendedStatisticsImageFilter.h.

References itk::ExtendedStatisticsImageFilter< TInputImage >::GetMedianOutput().

template<class TInputImage >

RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetMedianOutput ( )

protected

Referenced by itk::ExtendedStatisticsImageFilter< TInputImage >::GetMedian().

template<class TInputImage >

const RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetMedianOutput ( ) const

protected

template<class TInputImage >

RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetMedianOutput ( )

protected

template<class TInputImage >

const RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetMedianOutput ( ) const

protected

template<class TInputImage >

double itk::ExtendedStatisticsImageFilter< TInputImage >::GetMPP ( ) const

inline

Definition at line 84 of file mitkExtendedStatisticsImageFilter.h.

References itk::ExtendedStatisticsImageFilter< TInputImage >::GetMPPOutput().

template<class TInputImage >

double itk::ExtendedStatisticsImageFilter< TInputImage >::GetMPP ( ) const

inline

Definition at line 91 of file old/mitkExtendedStatisticsImageFilter.h.

References itk::ExtendedStatisticsImageFilter< TInputImage >::GetMPPOutput().

template<class TInputImage >

RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetMPPOutput ( )

protected

Referenced by itk::ExtendedStatisticsImageFilter< TInputImage >::GetMPP().

template<class TInputImage >

const RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetMPPOutput ( ) const

protected

template<class TInputImage >

RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetMPPOutput ( )

protected

template<class TInputImage >

const RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetMPPOutput ( ) const

protected

template<class TInputImage >

double itk::ExtendedStatisticsImageFilter< TInputImage >::GetSkewness ( ) const

inline

Return the computed Skewness.

Definition at line 61 of file mitkExtendedStatisticsImageFilter.h.

References itk::ExtendedStatisticsImageFilter< TInputImage >::GetSkewnessOutput().

template<class TInputImage >

double itk::ExtendedStatisticsImageFilter< TInputImage >::GetSkewness ( ) const

inline

Return the computed Skewness.

Definition at line 68 of file old/mitkExtendedStatisticsImageFilter.h.

References itk::ExtendedStatisticsImageFilter< TInputImage >::GetSkewnessOutput().

template<class TInputImage >

RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetSkewnessOutput ( )

protected

Referenced by itk::ExtendedStatisticsImageFilter< TInputImage >::GetSkewness().

template<class TInputImage >

const RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetSkewnessOutput ( ) const

protected

template<class TInputImage >

RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetSkewnessOutput ( )

protected

template<class TInputImage >

const RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetSkewnessOutput ( ) const

protected

template<class TInputImage >

double itk::ExtendedStatisticsImageFilter< TInputImage >::GetUniformity ( ) const

inline

Return the computed Uniformity.

Definition at line 92 of file mitkExtendedStatisticsImageFilter.h.

References itk::ExtendedStatisticsImageFilter< TInputImage >::GetUniformityOutput().

template<class TInputImage >

double itk::ExtendedStatisticsImageFilter< TInputImage >::GetUniformity ( ) const

inline

Return the computed Uniformity.

Definition at line 99 of file old/mitkExtendedStatisticsImageFilter.h.

References itk::ExtendedStatisticsImageFilter< TInputImage >::GetUniformityOutput().

template<class TInputImage >

RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetUniformityOutput ( )

protected

Referenced by itk::ExtendedStatisticsImageFilter< TInputImage >::GetUniformity().

template<class TInputImage >

const RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetUniformityOutput ( ) const

protected

template<class TInputImage >

RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetUniformityOutput ( )

protected

template<class TInputImage >

const RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetUniformityOutput ( ) const

protected

template<class TInputImage >

double itk::ExtendedStatisticsImageFilter< TInputImage >::GetUPP ( ) const

inline

Return the computed UPP.

Definition at line 108 of file mitkExtendedStatisticsImageFilter.h.

References itk::ExtendedStatisticsImageFilter< TInputImage >::GetUPPOutput().

template<class TInputImage >

double itk::ExtendedStatisticsImageFilter< TInputImage >::GetUPP ( ) const

inline

Return the computed UPP.

Definition at line 115 of file old/mitkExtendedStatisticsImageFilter.h.

References itk::ExtendedStatisticsImageFilter< TInputImage >::GetUPPOutput().

template<class TInputImage >

RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetUPPOutput ( )

protected

Referenced by itk::ExtendedStatisticsImageFilter< TInputImage >::GetUPP().

template<class TInputImage >

const RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetUPPOutput ( ) const

protected

template<class TInputImage >

RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetUPPOutput ( )

protected

template<class TInputImage >

const RealObjectType* itk::ExtendedStatisticsImageFilter< TInputImage >::GetUPPOutput ( ) const

protected

template<class TInputImage >

virtual DataObject::Pointer itk::ExtendedStatisticsImageFilter< TInputImage >::MakeOutput ( ProcessObject::DataObjectPointerArraySizeType  idx )

protectedvirtual

template<class TInputImage >

virtual DataObject::Pointer itk::ExtendedStatisticsImageFilter< TInputImage >::MakeOutput ( ProcessObject::DataObjectPointerArraySizeType  idx )

protectedvirtual

template<class TInputImage >

static Pointer itk::ExtendedStatisticsImageFilter< TInputImage >::New ( )

static

template<class TInputImage >

static Pointer itk::ExtendedStatisticsImageFilter< TInputImage >::New ( )

static

template<class TInputImage >

void itk::ExtendedStatisticsImageFilter< TInputImage >::SetBinSize

(

int

size

)

Set the Binsize for the Histogram.

template<class TInputImage >

void itk::ExtendedStatisticsImageFilter< TInputImage >::SetHistogramParameters	(	const int	numBins,
		RealType	lowerBound,
		RealType	upperBound
	)

specify Histogram parameters

template<class TInputImage >

void itk::ExtendedStatisticsImageFilter< TInputImage >::ThreadedGenerateData ( const typename StatisticsImageFilter< TInputImage >::RegionType &  outputRegionForThread, ThreadIdType  threadId  )

protected

Multi-thread version GenerateData.

Member Data Documentation

template<class TInputImage >

int itk::ExtendedStatisticsImageFilter< TInputImage >::m_BinSize

protected

Definition at line 162 of file old/mitkExtendedStatisticsImageFilter.h.

template<class TInputImage >

HistogramGeneratorType::Pointer itk::ExtendedStatisticsImageFilter< TInputImage >::m_HistogramGenerator

protected

Histogram.

new members for setting and calculating the hisotgram for those coefficients which depends on this

Definition at line 161 of file old/mitkExtendedStatisticsImageFilter.h.

Referenced by itk::ExtendedStatisticsImageFilter< TInputImage >::GetHistogram().

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The documentation for this class was generated from the following file:

• mitkExtendedStatisticsImageFilter.h