ImageStatisticsMiniapp_v2.cpp File Reference

#include "mitkCommandLineParser.h"
#include "mitkImage.h"
#include <mitkImageStatisticsCalculator.h>
#include <mitkExtendedLabelStatisticsImageFilter.h>
#include <mitkPlanarFigureMaskGenerator.h>
#include <mitkPlanarFigure.h>
#include "mitkIOUtil.h"
#include <iostream>
#include <usAny.h>
#include <fstream>
#include <itkImageRegionConstIterator.h>
#include "mitkImageAccessByItk.h"
#include <boost/accumulators/accumulators.hpp>
#include <boost/accumulators/statistics/stats.hpp>
#include <boost/accumulators/statistics/mean.hpp>
#include <boost/accumulators/statistics/variance.hpp>
#include <boost/accumulators/statistics/min.hpp>
#include <boost/accumulators/statistics/max.hpp>
#include <boost/accumulators/statistics/count.hpp>
#include <boost/accumulators/statistics/moment.hpp>
#include <mitkImageMaskGenerator.h>
#include <mitkHotspotMaskGenerator.h>
#include <mitkIgnorePixelMaskGenerator.h>
#include <chrono>

Go to the source code of this file.

Functions
long	getTimeInMs ()
template<class T , class P >
void	printMap (std::map< T, P > input)
template<typename TPixel , unsigned int VImageDimension>
void	get_statistics_boost (itk::Image< TPixel, VImageDimension > *itkImage, statistics_res &res)
void	compute_statistics (std::string inputImageFile="/home/fabian/MITK/MITK_platform_project/bin/MITK-superbuild/MITK-Data/Pic3D.nrrd", std::string outfname="/home/fabian/MITK/MITK_platform_project/bin/MITK-superbuild/MITK-Data/Pic3D_statistics_new.txt", std::string outfname2="/home/fabian/MITK/MITK_platform_project/bin/MITK-superbuild/MITK-Data/Pic3D_statistics_old.txt", std::string maskImageFile="/home/fabian/MITK/MITK_platform_project/bin/MITK-superbuild/MITK-Data/Pic3D_someSegmentation.nrrd", std::string pFfile="/home/fabian/MITK/MITK_platform_project/bin/MITK-superbuild/MITK-Data/Pic3D_rectangle.pf")
int	main (int argc, char *argv[])

Function Documentation

void compute_statistics	(	std::string	inputImageFile = "/home/fabian/MITK/MITK_platform_project/bin/MITK-superbuild/MITK-Data/Pic3D.nrrd",
		std::string	outfname = "/home/fabian/MITK/MITK_platform_project/bin/MITK-superbuild/MITK-Data/Pic3D_statistics_new.txt",
		std::string	outfname2 = "/home/fabian/MITK/MITK_platform_project/bin/MITK-superbuild/MITK-Data/Pic3D_statistics_old.txt",
		std::string	maskImageFile = "/home/fabian/MITK/MITK_platform_project/bin/MITK-superbuild/MITK-Data/Pic3D_someSegmentation.nrrd",
		std::string	pFfile = "/home/fabian/MITK/MITK_platform_project/bin/MITK-superbuild/MITK-Data/Pic3D_rectangle.pf"
	)

Definition at line 136 of file ImageStatisticsMiniapp_v2.cpp.

References getTimeInMs(), mitk::IOUtil::Load(), mitk::IOUtil::LoadImage(), mitk::ImageMaskGenerator::New(), mitk::ImageStatisticsCalculator::New(), mitk::IgnorePixelMaskGenerator::New(), mitk::PlanarFigureMaskGenerator::New(), and mitk::HotspotMaskGenerator::New().

Referenced by main().

template<typename TPixel , unsigned int VImageDimension>

void get_statistics_boost	(	itk::Image< TPixel, VImageDimension > *	itkImage,
		statistics_res &	res
	)

Definition at line 101 of file ImageStatisticsMiniapp_v2.cpp.

References max(), and min().

long getTimeInMs

(

)

Definition at line 47 of file ImageStatisticsMiniapp_v2.cpp.

Referenced by compute_statistics().

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 335 of file ImageStatisticsMiniapp_v2.cpp.

References compute_statistics().

template<class T , class P >

void printMap

(

std::map< T, P >

input

)

Definition at line 91 of file ImageStatisticsMiniapp_v2.cpp.