mitkMultiModalAffineDefaultRegistrationAlgorithm.h

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/*============================================================================
 
The Medical Imaging Interaction Toolkit (MITK)
 
Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.
 
Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.
 
============================================================================*/
 
#ifndef mitkMultiModalAffineDefaultRegistrationAlgorithm_h
#define mitkMultiModalAffineDefaultRegistrationAlgorithm_h
 
#include "mapDiscreteElements.h"
#include "mapITKAffineMattesMIMultiResRegistrationAlgorithmTemplate.h"
#include "mapConfigure.h"
 
#include "mitkMultiModalAffineDefaultRegistrationAlgorithm_ProfileResource.h"
 
namespace mitk
{
 
  template <class TImageType>
  class MultiModalAffineDefaultRegistrationAlgorithm :
    public map::algorithm::boxed::ITKAffineMattesMIMultiResRegistrationAlgorithm<TImageType, TImageType, ::map::algorithm::mitkMultiModalAffineDefaultRegistrationAlgorithmUIDPolicy, SealedFixedInterpolatorPolicyMacro< ::itk::LinearInterpolateImageFunction<TImageType, map::core::continuous::ScalarType> >, map::algorithm::itk::NoComponentInitializationPolicy>
  {
  public:
    typedef MultiModalAffineDefaultRegistrationAlgorithm Self;
 
    typedef map::algorithm::boxed::ITKAffineMattesMIMultiResRegistrationAlgorithm<TImageType, TImageType, ::map::algorithm::mitkMultiModalAffineDefaultRegistrationAlgorithmUIDPolicy, SealedFixedInterpolatorPolicyMacro< ::itk::LinearInterpolateImageFunction<TImageType, map::core::continuous::ScalarType> >, map::algorithm::itk::NoComponentInitializationPolicy>
      Superclass;
 
    typedef ::itk::SmartPointer<Self>                                     Pointer;
    typedef ::itk::SmartPointer<const Self>                               ConstPointer;
 
    itkTypeMacro(MultiModalAffineDefaultRegistrationAlgorithm,
      ITKAffineMattesMIMultiResRegistrationAlgorithm);
    mapNewAlgorithmMacro(Self);
 
  protected:
    MultiModalAffineDefaultRegistrationAlgorithm()
    {
    };
 
    ~MultiModalAffineDefaultRegistrationAlgorithm() override
    {
    };
 
    void configureAlgorithm() override
    {
      Superclass::configureAlgorithm();
 
      this->setResolutionLevels(3);
      this->_preInitialize = true;
      this->_useCenterOfGravity = false;
 
      this->getConcreteOptimizerControl()->getConcreteOptimizer()->SetMaximumStepLength(3.00);
      this->getConcreteOptimizerControl()->getConcreteOptimizer()->SetMinimumStepLength(0.5);
      this->getConcreteOptimizerControl()->getConcreteOptimizer()->SetNumberOfIterations(200);
      this->getConcreteOptimizerControl()->getConcreteOptimizer()->SetRelaxationFactor(0.8);
      this->getConcreteOptimizerControl()->getConcreteOptimizer()->SetGradientMagnitudeTolerance(1e-4);
 
      //metric
      this->getConcreteMetricControl()->getConcreteMetric()->SetNumberOfHistogramBins(30);
      this->getConcreteMetricControl()->getConcreteMetric()->SetUseAllPixels(true);
      this->getConcreteMetricControl()->getConcreteMetric()->ReinitializeSeed();
      this->getConcreteMetricControl()->getConcreteMetric()->UseExplicitPDFDerivativesOn();
    }
 
    void
      doInterLevelSetup() override
    {
      Superclass::doInterLevelSetup();
 
      //scale setting
      int dimCount = TImageType::ImageDimension*TImageType::ImageDimension + TImageType::ImageDimension;
      int matrixEnd = TImageType::ImageDimension*TImageType::ImageDimension;
      typename Superclass::ConcreteOptimizerType::ScalesType scales(dimCount);
      double matrixScale = 1.0;
      double transScale = 1.0;
 
      if (this->getCurrentLevel() == 0)
      {
        matrixScale = 10.0;
        transScale = 1.0 / 10000;
      }
      else
      {
        matrixScale = 1.0;
        transScale = 1.0 / 1000;
      }
 
      for (int i = 0; i < dimCount; ++i)
      {
        if (i < matrixEnd)
        {
          scales[i] = matrixScale;
 
        }
        else
        {
          scales[i] = transScale;
        }
      }
 
      this->getConcreteOptimizerControl()->getConcreteOptimizer()->SetScales(scales);
 
      //spatial samples setting
      if (this->getCurrentLevel() != 0)
      {
        this->getConcreteMetricControl()->getConcreteMetric()->SetUseAllPixels(false);
 
        unsigned int nrOfSmpl = ::itk::Math::Round<unsigned int, double>
          (this->getMovingImage()->GetLargestPossibleRegion().GetNumberOfPixels() * 0.30);
 
        this->getConcreteMetricControl()->getConcreteMetric()->SetNumberOfSpatialSamples(nrOfSmpl);
      }
    };
 
  private:
 
    MultiModalAffineDefaultRegistrationAlgorithm(const Self& source);  //purposely not implemented
    void operator=(const Self&); //purposely not implemented
  };
 
}
 
#endif