mitkItkImageIO.h

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/*============================================================================
 
The Medical Imaging Interaction Toolkit (MITK)
 
Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.
 
Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.
 
============================================================================*/
 
#ifndef mitkItkImageIO_h
#define mitkItkImageIO_h
 
#include "mitkAbstractFileIO.h"
#include <mitkImage.h>
#include <itkImageIOBase.h>
 
namespace mitk
{
  class MITKCORE_EXPORT ItkImageIO : public AbstractFileIO
  {
  public:
    ItkImageIO(itk::ImageIOBase::Pointer imageIO);
    ItkImageIO(const CustomMimeType &mimeType, itk::ImageIOBase::Pointer imageIO, int rank);
 
    // -------------- AbstractFileReader -------------
 
    using AbstractFileReader::Read;
 
    ConfidenceLevel GetReaderConfidenceLevel() const override;
 
    // -------------- AbstractFileWriter -------------
 
    void Write() override;
    ConfidenceLevel GetWriterConfidenceLevel() const override;
 
    static PropertyList::Pointer ExtractMetaDataAsPropertyList(const itk::MetaDataDictionary& dictionary, const std::string& mimeTypeName, const std::vector<std::string>& defaultMetaDataKeys);
 
    static Image::Pointer LoadRawMitkImageFromImageIO(itk::ImageIOBase* imageIO, const std::string& path);
 
    static void PreparImageIOToWriteImage(itk::ImageIOBase* imageIO, const Image* image);
 
    static void SavePropertyListAsMetaData(itk::MetaDataDictionary& dictionary, const PropertyList* properties, const std::string& mimeTypeName);
 
 
  protected:
    virtual std::vector<std::string> FixUpImageIOExtensions(const std::string &imageIOName);
    virtual void FixUpCustomMimeTypeName(const std::string &imageIOName, CustomMimeType &customMimeType);
 
    // Fills the m_DefaultMetaDataKeys vector with default values
    virtual void InitializeDefaultMetaDataKeys();
 
    // -------------- AbstractFileReader -------------
    std::vector<itk::SmartPointer<BaseData>> DoRead() override;
 
  private:
    ItkImageIO(const ItkImageIO &other);
 
    ItkImageIO *IOClone() const override;
 
    itk::ImageIOBase::Pointer m_ImageIO;
 
    std::vector<std::string> m_DefaultMetaDataKeys;
  };
 
  MITKCORE_EXPORT std::vector<TimePointType> ConvertMetaDataObjectToTimePointList(const itk::MetaDataObjectBase* data);
 
 
  MITKCORE_EXPORT itk::MetaDataObjectBase::Pointer ConvertTimePointListToMetaDataObject(const mitk::TimeGeometry* timeGeometry);
 
} // namespace mitk
 
#endif