mitkGIFCooccurenceMatrix2.h

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/*============================================================================

The Medical Imaging Interaction Toolkit (MITK)

Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.

Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.

============================================================================*/

#ifndef mitkGIFCooccurenceMatrix2_h
#define mitkGIFCooccurenceMatrix2_h

#include <mitkAbstractGlobalImageFeature.h>
#include <mitkBaseData.h>
#include <MitkCLUtilitiesExports.h>

#include <Eigen/src/Core/Array.h>

namespace mitk
{

  class MITKCLUTILITIES_EXPORT GIFCooccurenceMatrix2 : public AbstractGlobalImageFeature
  {
    public:
      mitkClassMacro(GIFCooccurenceMatrix2, AbstractGlobalImageFeature);
      itkFactorylessNewMacro(Self);
      itkCloneMacro(Self);

      GIFCooccurenceMatrix2();

      FeatureListType CalculateFeatures(const Image* image, const Image* mask, const Image* maskNoNAN) override;
      using Superclass::CalculateFeatures;

      itkGetConstMacro(Ranges, std::vector<double>);
      void SetRanges(std::vector<double> ranges);
      void SetRange(double range);

    void AddArguments(mitkCommandLineParser& parser) const override;

  protected:
    std::string GenerateLegacyFeatureEncoding(const FeatureID& id) const override;

    FeatureListType DoCalculateFeatures(const Image* image, const Image* mask) override;

    void ConfigureSettingsByParameters(const ParametersType& parameters) override;

    private:
      std::vector<double> m_Ranges;
  };

}
#endif //mitkGIFCooccurenceMatrix2_h