mitkCustomTagParser.h

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/*============================================================================

The Medical Imaging Interaction Toolkit (MITK)

Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.

Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.

============================================================================*/

#ifndef MITKCUSTOMTAGPARSER_H
#define MITKCUSTOMTAGPARSER_H

#include<mitkPropertyList.h>
#include<mitkTemporoSpatialStringProperty.h>

#include <MitkCESTExports.h>

namespace mitk
{
  class MITKCEST_EXPORT CustomTagParser
  {
  public:
    CustomTagParser(std::string relevantFile);

    mitk::PropertyList::Pointer ParseDicomProperty(mitk::TemporoSpatialStringProperty *dicomProperty);
    mitk::PropertyList::Pointer ParseDicomPropertyString(std::string dicomPropertyString);

    static std::string ReadListFromFile(const std::string& filePath);

    static std::string ExtractRevision(std::string sequenceFileName);

    void SetParseStrategy(std::string parseStrategy);
    void SetRevisionMappingStrategy(std::string revisionMappingStrategy);

    static const std::string m_RevisionPropertyName;

    static const std::string m_JSONRevisionPropertyName;

    static const std::string m_CESTPropertyPrefix;

  protected:
    std::string GetRevisionAppropriateJSONString(std::string revisionString);
    void GetClosestLowerRevision(std::string revisionString);
    std::string GetClosestLowerRevision(std::string revisionString, std::vector<int> availableRevisionsVector);

    bool IsT1Sequence(std::string preparationType, std::string recoveryMode, std::string spoilingType, std::string revisionString);

    std::string GetOffsetString(std::string samplingType, std::string offset, std::string measurements);

    std::vector<int> GetExternalRevisions();
    std::vector<int> GetInternalRevisions();

    std::string GetExternalJSONDirectory();

    std::string m_ClosestInternalRevision;
    std::string m_ClosestExternalRevision;

    static const std::string m_RevisionIndependentMapping;
    static const std::string m_DefaultJsonString;
    std::string m_DicomDataPath;
    std::string m_ParseStrategy;
    std::string m_RevisionMappingStrategy;
  };

}

#endif // MITKCUSTOMTAGPARSER_H