Normalization filter for CEST images. More...
#include <mitkCESTImageNormalizationFilter.h>
Public Member Functions | |
| mitkClassMacro (CESTImageNormalizationFilter, ImageToImageFilter) | |
| Pointer | Clone () const |
 Public Member Functions inherited from mitk::ImageToImageFilter | |
| virtual std::vector< std::string > | GetClassHierarchy () const override |
| virtual const char * | GetClassName () const |
| Pointer | Clone () const |
| virtual void | SetInput (const InputImageType *image) |
| virtual void | SetInput (unsigned int, const InputImageType *image) |
| InputImageType * | GetInput (void) |
| InputImageType * | GetInput (unsigned int idx) |
| const InputImageType * | GetInput (void) const |
| const InputImageType * | GetInput (unsigned int idx) const |
| Public Member Functions inherited from mitk::ImageSource | |
| Pointer | Clone () const |
| OutputType * | GetOutput () |
| Get the output data of this image source object. More... | |
| const OutputType * | GetOutput () const |
| OutputType * | GetOutput (DataObjectPointerArraySizeType idx) |
| const OutputType * | GetOutput (DataObjectPointerArraySizeType idx) const |
| itk::DataObject::Pointer | MakeOutput (DataObjectPointerArraySizeType idx) override |
| Make a DataObject of the correct type to used as the specified output. More... | |
| itk::DataObject::Pointer | MakeOutput (const DataObjectIdentifierType &name) override |
| virtual vtkImageData * | GetVtkImageData () |
| virtual const vtkImageData * | GetVtkImageData () const |
| Public Member Functions inherited from mitk::BaseDataSource | |
| OutputType * | GetOutput () |
| const OutputType * | GetOutput () const |
| OutputType * | GetOutput (DataObjectPointerArraySizeType idx) |
| const OutputType * | GetOutput (DataObjectPointerArraySizeType idx) const |
| virtual void | GraftOutput (OutputType *output) |
| Graft the specified BaseData onto this BaseDataSource's output. More... | |
| virtual void | GraftOutput (const DataObjectIdentifierType &key, OutputType *output) |
| virtual void | GraftNthOutput (unsigned int idx, OutputType *output) |
| Graft the specified base data object onto this BaseDataSource's idx'th output. More... | |
| bool | Updating () const |
| Access itk::ProcessObject::m_Updating. More... | |
Static Public Member Functions | |
| static Pointer | New () |
| Static Public Member Functions inherited from mitk::ImageToImageFilter | |
| static const char * | GetStaticNameOfClass () |
| static Pointer | New () |
| Static Public Member Functions inherited from mitk::ImageSource | |
| static const char * | GetStaticNameOfClass () |
| static Pointer | New () |
| Method for creation through the object factory. More... | |
| Static Public Member Functions inherited from mitk::BaseDataSource | |
| static const char * | GetStaticNameOfClass () |
Protected Member Functions | |
| CESTImageNormalizationFilter () | |
| standard constructor More... | |
| ~CESTImageNormalizationFilter () override | |
| standard destructor More... | |
| void | GenerateOutputInformation () override |
| Method generating the output information of this filter (e.g. image dimension, image type, etc.). The interface ImageToImageFilter requires this implementation. Everything is taken from the input image. More... | |
| void | GenerateData () override |
| Method generating the output of this filter. Called in the updated process of the pipeline. This method generates the normalized output image. More... | |
| template<typename TPixel , unsigned int VImageDimension> | |
| void | NormalizeTimeSteps (const itk::Image< TPixel, VImageDimension > *image) |
| Protected Member Functions inherited from mitk::ImageToImageFilter | |
| ImageToImageFilter () | |
| ~ImageToImageFilter () override | |
| void | PrintSelf (std::ostream &os, itk::Indent indent) const override |
| void | GenerateInputRequestedRegion () override |
| Protected Member Functions inherited from mitk::ImageSource | |
| ImageSource () | |
| ~ImageSource () override | |
| void | GenerateData () override |
| A version of GenerateData() specific for image processing filters. More... | |
| virtual void | ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, itk::ThreadIdType threadId) |
| If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData(). More... | |
| void | PrepareOutputs () override |
| This method is intentionally left blank. More... | |
| virtual void | AllocateOutputs () |
| The GenerateData method normally allocates the buffers for all of the outputs of a filter. More... | |
| virtual void | BeforeThreadedGenerateData () |
| If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). More... | |
| virtual void | AfterThreadedGenerateData () |
| If an imaging filter needs to perform processing after all processing threads have completed, the filter can can provide an implementation for AfterThreadedGenerateData(). More... | |
| virtual unsigned int | SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion) |
| Split the output's RequestedRegion into "num" pieces, returning region "i" as "splitRegion". More... | |
| Protected Member Functions inherited from mitk::BaseDataSource | |
| BaseDataSource () | |
| ~BaseDataSource () override | |
Protected Attributes | |
| std::string | m_RealOffsets |
| Offsets without M0s. More... | |
| std::vector< unsigned int > | m_NonM0Indices |
| non M0 indices More... | |
Detailed Description
Normalization filter for CEST images.
This filter can be used to normalize CEST images, it only works with 4D images and assumes that the input mitk::Image has a property called mitk::CustomTagParser::m_OffsetsPropertyName, with offsets separated by spaces. The number of offsets has to match the number of timesteps.
Each timestep with a corresponding offset greater than 299 or less than -299 will be interpreted as normalization (M0) image. If only one M0 image is present normalization will be done by dividing the voxel value by the corresponding M0 voxel value. If multiple M0 images are present normalization between any two M0 images will be done by dividing by a linear interpolation between the two. The M0 images themselves will be removed from the result. The output image will have the same 3D geometry as the input image, a time geometry only consisting of non M0 images and a double pixel type.
Definition at line 35 of file mitkCESTImageNormalizationFilter.h.
Constructor & Destructor Documentation
◆ CESTImageNormalizationFilter()
|
protected |
standard constructor
◆ ~CESTImageNormalizationFilter()
|
overrideprotected |
standard destructor
Member Function Documentation
◆ Clone()
| Pointer mitk::CESTImageNormalizationFilter::Clone | ( | ) | const |
◆ GenerateData()
|
overrideprotected |
Method generating the output of this filter. Called in the updated process of the pipeline. This method generates the normalized output image.
◆ GenerateOutputInformation()
|
overrideprotected |
Method generating the output information of this filter (e.g. image dimension, image type, etc.). The interface ImageToImageFilter requires this implementation. Everything is taken from the input image.
◆ mitkClassMacro()
| mitk::CESTImageNormalizationFilter::mitkClassMacro | ( | CESTImageNormalizationFilter | , |
| ImageToImageFilter | |||
| ) |
◆ New()
|
static |
◆ NormalizeTimeSteps()
|
protected |
Internal templated method that normalizes across timesteps
Member Data Documentation
◆ m_NonM0Indices
|
protected |
non M0 indices
Definition at line 71 of file mitkCESTImageNormalizationFilter.h.
◆ m_RealOffsets
|
protected |
Offsets without M0s.
Definition at line 68 of file mitkCESTImageNormalizationFilter.h.
The documentation for this class was generated from the following file:
