mitkCESTImageNormalizationFilter.h

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/*============================================================================

The Medical Imaging Interaction Toolkit (MITK)

Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.

Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.

============================================================================*/
#ifndef __mitkCESTImageNormalizationFilter_h
#define __mitkCESTImageNormalizationFilter_h

#include <MitkCESTExports.h>

// MITK
#include "mitkImageToImageFilter.h"

namespace mitk
{
  class MITKCEST_EXPORT CESTImageNormalizationFilter : public ImageToImageFilter
  {
  public:
    mitkClassMacro(CESTImageNormalizationFilter, ImageToImageFilter);
    itkFactorylessNewMacro(Self);
    itkCloneMacro(Self);

  protected:
    CESTImageNormalizationFilter();
    ~CESTImageNormalizationFilter() override;
    void GenerateOutputInformation() override;
    void GenerateData() override;

    template <typename TPixel, unsigned int VImageDimension>
    void NormalizeTimeSteps(const itk::Image<TPixel, VImageDimension>* image);

    std::string m_RealOffsets;

    std::vector< unsigned int > m_NonM0Indices;

  };

  MITKCEST_EXPORT bool IsNotNormalizedCESTImage(const Image* cestImage);

} // END mitk namespace

#endif