mitk::NumericTwoCompartmentExchangeModelParameterizer Class Reference

#include <mitkNumericTwoCompartmentExchangeModelParameterizer.h>

Inheritance diagram for mitk::NumericTwoCompartmentExchangeModelParameterizer:

Collaboration diagram for mitk::NumericTwoCompartmentExchangeModelParameterizer:

Public Types
typedef NumericTwoCompartmentExchangeModelParameterizer	Self
typedef mitk::AIFBasedModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >	Superclass
typedef itk::SmartPointer< Self >	Pointer
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass::ModelBaseType	ModelBaseType
typedef Superclass::ModelBasePointer	ModelBasePointer
typedef Superclass::ModelType	ModelType
typedef ModelType::Pointer	ModelPointer
typedef Superclass::StaticParameterValueType	StaticParameterValueType
typedef Superclass::StaticParameterValuesType	StaticParameterValuesType
typedef Superclass::StaticParameterMapType	StaticParameterMapType
typedef Superclass::IndexType	IndexType
Public Types inherited from mitk::AIFBasedModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >
typedef AIFBasedModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >	Self
typedef ConcreteModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >	Superclass
typedef itk::SmartPointer< Self >	Pointer
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass::ModelBaseType	ModelBaseType
typedef Superclass::ModelBasePointer	ModelBasePointer
typedef Superclass::ModelType	ModelType
typedef Superclass::ModelPointer	ModelPointer
typedef Superclass::StaticParameterValueType	StaticParameterValueType
typedef Superclass::StaticParameterValuesType	StaticParameterValuesType
typedef Superclass::StaticParameterMapType	StaticParameterMapType
typedef Superclass::IndexType	IndexType
Public Types inherited from mitk::ConcreteModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >
typedef ConcreteModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >	Self
typedef ModelParameterizerBase	Superclass
typedef itk::SmartPointer< Self >	Pointer
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass::ModelBaseType	ModelBaseType
typedef Superclass::ModelBasePointer	ModelBasePointer
typedef mitk::NumericTwoCompartmentExchangeModel	ModelType
typedef ModelType::Pointer	ModelPointer
typedef Superclass::StaticParameterValueType	StaticParameterValueType
typedef Superclass::StaticParameterValuesType	StaticParameterValuesType
typedef Superclass::StaticParameterMapType	StaticParameterMapType
typedef Superclass::IndexType	IndexType
Public Types inherited from mitk::ModelParameterizerBase
typedef ModelParameterizerBase	Self
typedef itk::Object	Superclass
typedef itk::SmartPointer< Self >	Pointer
typedef itk::SmartPointer< const Self >	ConstPointer
typedef ModelBase	ModelBaseType
typedef ModelBaseType::Pointer	ModelBasePointer
typedef ModelBaseType::ParametersType	ParametersType
typedef ModelBaseType::StaticParameterValueType	StaticParameterValueType
typedef ModelBaseType::StaticParameterValuesType	StaticParameterValuesType
typedef ModelBaseType::StaticParameterMapType	StaticParameterMapType
typedef ModelBaseType::TimeGridType	TimeGridType
typedef ::itk::Index< 3 >	IndexType
Public Types inherited from mitk::ModelTraitsInterface
typedef itk::Array< double >	ModelResultType
using	ParameterValueType = double
typedef itk::Array< ParameterValueType >	ParametersType
typedef std::string	ParameterNameType
typedef std::vector< ParameterNameType >	ParameterNamesType
typedef ParametersType::SizeValueType	ParametersSizeType
typedef ParameterNamesType	DerivedParameterNamesType
typedef ParametersSizeType	DerivedParametersSizeType
typedef std::map< ParameterNameType, double >	ParamterScaleMapType
typedef std::map< ParameterNameType, std::string >	ParamterUnitMapType
typedef std::map< ParameterNameType, double >	DerivedParamterScaleMapType
typedef std::map< ParameterNameType, std::string >	DerivedParamterUnitMapType
typedef std::string	FunctionStringType
typedef std::string	ModellClassIDType

Public Member Functions
virtual const char *	GetClassName () const
virtual void	SetODEINTStepSize (double _arg)
virtual const double &	GetODEINTStepSize ()
StaticParameterMapType	GetGlobalStaticParameters () const override
ParametersType	GetDefaultInitialParameterization () const override
Public Member Functions inherited from mitk::AIFBasedModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >
virtual void	SetAIF (mitk::AIFBasedModelBase::AterialInputFunctionType _arg)
virtual const mitk::AIFBasedModelBase::AterialInputFunctionType &	GetAIF ()
virtual void	SetAIFTimeGrid (mitk::ModelBase::TimeGridType _arg)
virtual const mitk::ModelBase::TimeGridType &	GetAIFTimeGrid ()
StaticParameterMapType	GetGlobalStaticParameters () const override
Public Member Functions inherited from mitk::ConcreteModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >
StaticParameterMapType	GetLocalStaticParameters (const IndexType &) const override
ModelBasePointer	GenerateParameterizedModel (const IndexType &currentPosition) const override
ModelBasePointer	GenerateParameterizedModel () const override
ParametersType	GetDefaultInitialParameterization () const override
ParameterNamesType	GetParameterNames () const override
ParametersSizeType	GetNumberOfParameters () const override
ParamterScaleMapType	GetParameterScales () const override
ParamterUnitMapType	GetParameterUnits () const override
ParameterNamesType	GetDerivedParameterNames () const override
ParametersSizeType	GetNumberOfDerivedParameters () const override
DerivedParamterScaleMapType	GetDerivedParameterScales () const override
DerivedParamterUnitMapType	GetDerivedParameterUnits () const override
std::string	GetModelDisplayName () const override
std::string	GetModelType () const override
FunctionStringType	GetFunctionString () const override
ModellClassIDType	GetClassID () const override
std::string	GetXName () const override
std::string	GetXAxisName () const override
std::string	GetXAxisUnit () const override
std::string	GetYAxisName () const override
std::string	GetYAxisUnit () const override
Public Member Functions inherited from mitk::ModelParameterizerBase
ParametersType	GetInitialParameterization () const
ParametersType	GetInitialParameterization (const IndexType &currentPosition) const
void	SetInitialParameterizationDelegate (const InitialParameterizationDelegateBase *delegate)
virtual void	SetDefaultTimeGrid (TimeGridType _arg)
virtual const TimeGridType &	GetDefaultTimeGrid ()

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from mitk::ConcreteModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >
static Pointer	New ()

Protected Member Functions
	NumericTwoCompartmentExchangeModelParameterizer ()
	~NumericTwoCompartmentExchangeModelParameterizer () override
Protected Member Functions inherited from mitk::AIFBasedModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >
	AIFBasedModelParameterizerBase ()
	~AIFBasedModelParameterizerBase () override
Protected Member Functions inherited from mitk::ConcreteModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >
	ConcreteModelParameterizerBase ()
	~ConcreteModelParameterizerBase () override
Protected Member Functions inherited from mitk::ModelParameterizerBase
	ModelParameterizerBase ()
	~ModelParameterizerBase () override
Protected Member Functions inherited from mitk::ModelTraitsInterface
	ModelTraitsInterface ()
virtual	~ModelTraitsInterface ()

Protected Attributes
double	m_ODEINTStepSize
Protected Attributes inherited from mitk::AIFBasedModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >
mitk::AIFBasedModelBase::AterialInputFunctionType	m_AIF
mitk::ModelBase::TimeGridType	m_AIFTimeGrid
Protected Attributes inherited from mitk::ModelParameterizerBase
InitialParameterizationDelegateBase::ConstPointer	m_InitialDelegate
TimeGridType	m_DefaultTimeGrid

Detailed Description

Definition at line 24 of file mitkNumericTwoCompartmentExchangeModelParameterizer.h.

Member Typedef Documentation

ConstPointer

typedef itk::SmartPointer< const Self > mitk::NumericTwoCompartmentExchangeModelParameterizer::ConstPointer

Definition at line 31 of file mitkNumericTwoCompartmentExchangeModelParameterizer.h.

IndexType

typedef Superclass::IndexType mitk::NumericTwoCompartmentExchangeModelParameterizer::IndexType

Definition at line 47 of file mitkNumericTwoCompartmentExchangeModelParameterizer.h.

ModelBasePointer

typedef Superclass::ModelBasePointer mitk::NumericTwoCompartmentExchangeModelParameterizer::ModelBasePointer

Definition at line 38 of file mitkNumericTwoCompartmentExchangeModelParameterizer.h.

ModelBaseType

typedef Superclass::ModelBaseType mitk::NumericTwoCompartmentExchangeModelParameterizer::ModelBaseType

Definition at line 35 of file mitkNumericTwoCompartmentExchangeModelParameterizer.h.

ModelPointer

typedef ModelType::Pointer mitk::NumericTwoCompartmentExchangeModelParameterizer::ModelPointer

Definition at line 41 of file mitkNumericTwoCompartmentExchangeModelParameterizer.h.

ModelType

typedef Superclass::ModelType mitk::NumericTwoCompartmentExchangeModelParameterizer::ModelType

Definition at line 40 of file mitkNumericTwoCompartmentExchangeModelParameterizer.h.

Pointer

typedef itk::SmartPointer< Self > mitk::NumericTwoCompartmentExchangeModelParameterizer::Pointer

Definition at line 30 of file mitkNumericTwoCompartmentExchangeModelParameterizer.h.

Self

typedef NumericTwoCompartmentExchangeModelParameterizer mitk::NumericTwoCompartmentExchangeModelParameterizer::Self

Definition at line 28 of file mitkNumericTwoCompartmentExchangeModelParameterizer.h.

StaticParameterMapType

typedef Superclass::StaticParameterMapType mitk::NumericTwoCompartmentExchangeModelParameterizer::StaticParameterMapType

Definition at line 45 of file mitkNumericTwoCompartmentExchangeModelParameterizer.h.

StaticParameterValuesType

typedef Superclass::StaticParameterValuesType mitk::NumericTwoCompartmentExchangeModelParameterizer::StaticParameterValuesType

Definition at line 44 of file mitkNumericTwoCompartmentExchangeModelParameterizer.h.

StaticParameterValueType

typedef Superclass::StaticParameterValueType mitk::NumericTwoCompartmentExchangeModelParameterizer::StaticParameterValueType

Definition at line 43 of file mitkNumericTwoCompartmentExchangeModelParameterizer.h.

Superclass

typedef mitk::AIFBasedModelParameterizerBase<mitk::NumericTwoCompartmentExchangeModel> mitk::NumericTwoCompartmentExchangeModelParameterizer::Superclass

Definition at line 29 of file mitkNumericTwoCompartmentExchangeModelParameterizer.h.

Constructor & Destructor Documentation

NumericTwoCompartmentExchangeModelParameterizer()

mitk::NumericTwoCompartmentExchangeModelParameterizer::NumericTwoCompartmentExchangeModelParameterizer ( )

protected

Definition at line 28 of file mitkNumericTwoCompartmentExchangeModelParameterizer.cpp.

~NumericTwoCompartmentExchangeModelParameterizer()

mitk::NumericTwoCompartmentExchangeModelParameterizer::~NumericTwoCompartmentExchangeModelParameterizer ( )

overrideprotected

Definition at line 32 of file mitkNumericTwoCompartmentExchangeModelParameterizer.cpp.

Member Function Documentation

GetClassName()

virtual const char* mitk::NumericTwoCompartmentExchangeModelParameterizer::GetClassName ( ) const

virtual

Reimplemented from mitk::AIFBasedModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >.

GetDefaultInitialParameterization()

mitk::NumericTwoCompartmentExchangeModelParameterizer::ParametersType mitk::NumericTwoCompartmentExchangeModelParameterizer::GetDefaultInitialParameterization ( ) const

overridevirtual

This function returns the default parameterization (e.g. initial parametrization for fitting) defined by the model developer for for the given model.

Implements mitk::ModelParameterizerBase.

Definition at line 16 of file mitkNumericTwoCompartmentExchangeModelParameterizer.cpp.

References mitk::NumericTwoCompartmentExchangeModel::POSITION_PARAMETER_F, mitk::NumericTwoCompartmentExchangeModel::POSITION_PARAMETER_PS, mitk::NumericTwoCompartmentExchangeModel::POSITION_PARAMETER_ve, and mitk::NumericTwoCompartmentExchangeModel::POSITION_PARAMETER_vp.

GetGlobalStaticParameters()

mitk::NumericTwoCompartmentExchangeModelParameterizer::StaticParameterMapType mitk::NumericTwoCompartmentExchangeModelParameterizer::GetGlobalStaticParameters ( ) const

overridevirtual

Returns the global static parameters for the model.

Remarks

this default implementation assumes only AIF and its timegrid as static parameters. Reimplement in derived classes to change this behavior.

Implements mitk::ModelParameterizerBase.

Definition at line 36 of file mitkNumericTwoCompartmentExchangeModelParameterizer.cpp.

References mitk::convertArrayToParameter(), mitk::AIFBasedModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >::m_AIF, mitk::AIFBasedModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >::m_AIFTimeGrid, and m_ODEINTStepSize.

GetODEINTStepSize()

virtual const double& mitk::NumericTwoCompartmentExchangeModelParameterizer::GetODEINTStepSize ( )

virtual

New()

static Pointer mitk::NumericTwoCompartmentExchangeModelParameterizer::New ( )

static

Referenced by mitk::NumericTwoCompartmentExchangeModelFactory::DoCreateParameterizer().

SetODEINTStepSize()

virtual void mitk::NumericTwoCompartmentExchangeModelParameterizer::SetODEINTStepSize ( double  _arg )

virtual

Member Data Documentation

m_ODEINTStepSize

double mitk::NumericTwoCompartmentExchangeModelParameterizer::m_ODEINTStepSize

protected

Definition at line 64 of file mitkNumericTwoCompartmentExchangeModelParameterizer.h.

Referenced by GetGlobalStaticParameters().

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The documentation for this class was generated from the following files:

• mitkNumericTwoCompartmentExchangeModelParameterizer.h
• mitkNumericTwoCompartmentExchangeModelParameterizer.cpp