Medical Imaging Interaction Toolkit  2018.4.99-389bf124
Medical Imaging Interaction Toolkit
Public Types | Public Member Functions | Protected Member Functions | Protected Attributes | List of all members
mitk::ModelParameterizerBase Class Referenceabstract

#include <mitkModelParameterizerBase.h>

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Public Types

typedef ModelParameterizerBase Self
 
typedef itk::Object Superclass
 
typedef itk::SmartPointer< Self > Pointer
 
typedef itk::SmartPointer< const Self > ConstPointer
 
typedef ModelBase ModelBaseType
 
typedef ModelBaseType::Pointer ModelBasePointer
 
typedef ModelBaseType::ParametersType ParametersType
 
typedef ModelBaseType::StaticParameterValueType StaticParameterValueType
 
typedef ModelBaseType::StaticParameterValuesType StaticParameterValuesType
 
typedef ModelBaseType::StaticParameterMapType StaticParameterMapType
 
typedef ModelBaseType::TimeGridType TimeGridType
 
typedef ::itk::Index< 3 > IndexType
 
- Public Types inherited from mitk::ModelTraitsInterface
typedef itk::Array< double > ModelResultType
 
using ParameterValueType = double
 
typedef itk::Array< ParameterValueType > ParametersType
 
typedef std::string ParameterNameType
 
typedef std::vector< ParameterNameType > ParameterNamesType
 
typedef ParametersType::SizeValueType ParametersSizeType
 
typedef ParameterNamesType DerivedParameterNamesType
 
typedef ParametersSizeType DerivedParametersSizeType
 
typedef std::map< ParameterNameType, double > ParamterScaleMapType
 
typedef std::map< ParameterNameType, std::string > ParamterUnitMapType
 
typedef std::map< ParameterNameType, double > DerivedParamterScaleMapType
 
typedef std::map< ParameterNameType, std::string > DerivedParamterUnitMapType
 
typedef std::string FunctionStringType
 
typedef std::string ModellClassIDType
 

Public Member Functions

virtual const char * GetClassName () const
 
virtual StaticParameterMapType GetGlobalStaticParameters () const =0
 
virtual StaticParameterMapType GetLocalStaticParameters (const IndexType &currentPosition) const =0
 
ParametersType GetInitialParameterization () const
 
ParametersType GetInitialParameterization (const IndexType &currentPosition) const
 
virtual ParametersType GetDefaultInitialParameterization () const =0
 
void SetInitialParameterizationDelegate (const InitialParameterizationDelegateBase *delegate)
 
virtual ModelBasePointer GenerateParameterizedModel (const IndexType &currentPosition) const =0
 
virtual ModelBasePointer GenerateParameterizedModel () const =0
 
virtual void SetDefaultTimeGrid (TimeGridType _arg)
 
virtual const TimeGridType & GetDefaultTimeGrid ()
 
- Public Member Functions inherited from mitk::ModelTraitsInterface
virtual ParameterNamesType GetParameterNames () const =0
 
virtual ParametersSizeType GetNumberOfParameters () const =0
 
virtual ParamterScaleMapType GetParameterScales () const =0
 
virtual ParamterUnitMapType GetParameterUnits () const =0
 
virtual DerivedParameterNamesType GetDerivedParameterNames () const =0
 
virtual DerivedParametersSizeType GetNumberOfDerivedParameters () const =0
 
virtual DerivedParamterScaleMapType GetDerivedParameterScales () const =0
 
virtual DerivedParamterUnitMapType GetDerivedParameterUnits () const =0
 
virtual std::string GetModelDisplayName () const =0
 
virtual std::string GetModelType () const =0
 
virtual FunctionStringType GetFunctionString () const =0
 
virtual ModellClassIDType GetClassID () const =0
 
virtual std::string GetXName () const =0
 
virtual std::string GetXAxisName () const =0
 
virtual std::string GetXAxisUnit () const =0
 
virtual std::string GetYAxisName () const =0
 
virtual std::string GetYAxisUnit () const =0
 

Protected Member Functions

 ModelParameterizerBase ()
 
 ~ModelParameterizerBase () override
 
- Protected Member Functions inherited from mitk::ModelTraitsInterface
 ModelTraitsInterface ()
 
virtual ~ModelTraitsInterface ()
 

Protected Attributes

InitialParameterizationDelegateBase::ConstPointer m_InitialDelegate
 
TimeGridType m_DefaultTimeGrid
 

Detailed Description

Base class for all model parameterizers Model parameterizers are used to offer a generic api to generate/bind models with specific global static and local static parameters in order to utilize the model correctly.

  • Global static parameter: parameters that are the same for a model independent of the spatial position (in image space) that should be modeled (e.g. parameter "Tau" for the DescriptivePharmacokineticBrixModel)
  • Local static parameter: parameters that are specific for the spatial position (in image space) that should be modeled (e.g. parameter "S0" for the DescriptivePharmacokineticBrixModel)

Definition at line 36 of file mitkModelParameterizerBase.h.

Member Typedef Documentation

◆ ConstPointer

typedef itk::SmartPointer< const Self > mitk::ModelParameterizerBase::ConstPointer

Definition at line 42 of file mitkModelParameterizerBase.h.

◆ IndexType

typedef ::itk::Index<3> mitk::ModelParameterizerBase::IndexType

Definition at line 55 of file mitkModelParameterizerBase.h.

◆ ModelBasePointer

typedef ModelBaseType::Pointer mitk::ModelParameterizerBase::ModelBasePointer

Definition at line 47 of file mitkModelParameterizerBase.h.

◆ ModelBaseType

typedef ModelBase mitk::ModelParameterizerBase::ModelBaseType

Definition at line 44 of file mitkModelParameterizerBase.h.

◆ ParametersType

typedef ModelBaseType::ParametersType mitk::ModelParameterizerBase::ParametersType

Definition at line 49 of file mitkModelParameterizerBase.h.

◆ Pointer

typedef itk::SmartPointer< Self > mitk::ModelParameterizerBase::Pointer

Definition at line 41 of file mitkModelParameterizerBase.h.

◆ Self

typedef ModelParameterizerBase mitk::ModelParameterizerBase::Self

Definition at line 39 of file mitkModelParameterizerBase.h.

◆ StaticParameterMapType

typedef ModelBaseType::StaticParameterMapType mitk::ModelParameterizerBase::StaticParameterMapType

Definition at line 52 of file mitkModelParameterizerBase.h.

◆ StaticParameterValuesType

typedef ModelBaseType::StaticParameterValuesType mitk::ModelParameterizerBase::StaticParameterValuesType

Definition at line 51 of file mitkModelParameterizerBase.h.

◆ StaticParameterValueType

typedef ModelBaseType::StaticParameterValueType mitk::ModelParameterizerBase::StaticParameterValueType

Definition at line 50 of file mitkModelParameterizerBase.h.

◆ Superclass

typedef itk::Object mitk::ModelParameterizerBase::Superclass

Definition at line 40 of file mitkModelParameterizerBase.h.

◆ TimeGridType

typedef ModelBaseType::TimeGridType mitk::ModelParameterizerBase::TimeGridType

Definition at line 53 of file mitkModelParameterizerBase.h.

Constructor & Destructor Documentation

◆ ModelParameterizerBase()

mitk::ModelParameterizerBase::ModelParameterizerBase ( )
protected

Definition at line 16 of file mitkModelParameterizerBase.cpp.

References m_DefaultTimeGrid.

◆ ~ModelParameterizerBase()

mitk::ModelParameterizerBase::~ModelParameterizerBase ( )
overrideprotected

Definition at line 22 of file mitkModelParameterizerBase.cpp.

Member Function Documentation

◆ GenerateParameterizedModel() [1/2]

virtual ModelBasePointer mitk::ModelParameterizerBase::GenerateParameterizedModel ( const IndexType &  currentPosition) const
pure virtual

Implemented in mitk::ConcreteModelParameterizerBase< TModel >, mitk::ConcreteModelParameterizerBase< mitk::TwoCompartmentExchangeModel >, mitk::ConcreteModelParameterizerBase< mitk::TwoTissueCompartmentFDGModel >, mitk::ConcreteModelParameterizerBase< mitk::ExtendedOneTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< GenericParamModel >, mitk::ConcreteModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >, mitk::ConcreteModelParameterizerBase< mitk::NumericTwoTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< mitk::OneTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< mitk::StandardToftsModel >, mitk::ConcreteModelParameterizerBase< mitk::TwoTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< mitk::T2DecayModel >, mitk::ConcreteModelParameterizerBase< mitk::ExtendedToftsModel >, mitk::ConcreteModelParameterizerBase< TAIFBasedModel >, mitk::ConcreteModelParameterizerBase< mitk::ThreeStepLinearModel >, mitk::ConcreteModelParameterizerBase< mitk::DescriptivePharmacokineticBrixModel >, and mitk::GenericParamModelParameterizer.

Referenced by createDefaultFitFunctor().

◆ GenerateParameterizedModel() [2/2]

virtual ModelBasePointer mitk::ModelParameterizerBase::GenerateParameterizedModel ( ) const
pure virtual

Generate model instance, only with global static parametrization. Any local static parameter stay default.

Implemented in mitk::ConcreteModelParameterizerBase< TModel >, mitk::ConcreteModelParameterizerBase< mitk::TwoCompartmentExchangeModel >, mitk::ConcreteModelParameterizerBase< mitk::TwoTissueCompartmentFDGModel >, mitk::ConcreteModelParameterizerBase< mitk::ExtendedOneTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< GenericParamModel >, mitk::ConcreteModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >, mitk::ConcreteModelParameterizerBase< mitk::NumericTwoTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< mitk::OneTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< mitk::StandardToftsModel >, mitk::ConcreteModelParameterizerBase< mitk::TwoTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< mitk::T2DecayModel >, mitk::ConcreteModelParameterizerBase< mitk::ExtendedToftsModel >, mitk::ConcreteModelParameterizerBase< TAIFBasedModel >, mitk::ConcreteModelParameterizerBase< mitk::ThreeStepLinearModel >, and mitk::ConcreteModelParameterizerBase< mitk::DescriptivePharmacokineticBrixModel >.

◆ GetClassName()

virtual const char* mitk::ModelParameterizerBase::GetClassName ( ) const
virtual

Reimplemented in mitk::DescriptivePharmacokineticBrixModelParameterizer, mitk::ExtendedOneTissueCompartmentModelParameterizer, mitk::ExtendedToftsModelParameterizer, mitk::NumericTwoCompartmentExchangeModelParameterizer, mitk::NumericTwoTissueCompartmentModelParameterizer, mitk::OneTissueCompartmentModelParameterizer, mitk::StandardToftsModelParameterizer, mitk::TwoCompartmentExchangeModelParameterizer, mitk::TwoTissueCompartmentFDGModelParameterizer, mitk::TwoTissueCompartmentModelParameterizer, mitk::T2DecayModelParameterizer, mitk::AIFBasedModelParameterizerBase< TAIFBasedModel >, mitk::DescriptivePharmacokineticBrixModelValueBasedParameterizer, mitk::AIFBasedModelParameterizerBase< mitk::TwoCompartmentExchangeModel >, mitk::AIFBasedModelParameterizerBase< mitk::TwoTissueCompartmentFDGModel >, mitk::AIFBasedModelParameterizerBase< mitk::ExtendedOneTissueCompartmentModel >, mitk::AIFBasedModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >, mitk::AIFBasedModelParameterizerBase< mitk::NumericTwoTissueCompartmentModel >, mitk::AIFBasedModelParameterizerBase< mitk::OneTissueCompartmentModel >, mitk::AIFBasedModelParameterizerBase< mitk::StandardToftsModel >, mitk::AIFBasedModelParameterizerBase< mitk::TwoTissueCompartmentModel >, mitk::AIFBasedModelParameterizerBase< mitk::ExtendedToftsModel >, mitk::GenericParamModelParameterizer, mitk::ThreeStepLinearModelParameterizer, mitk::ConcreteModelParameterizerBase< TModel >, mitk::ConcreteModelParameterizerBase< mitk::TwoCompartmentExchangeModel >, mitk::ConcreteModelParameterizerBase< mitk::TwoTissueCompartmentFDGModel >, mitk::ConcreteModelParameterizerBase< mitk::ExtendedOneTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< GenericParamModel >, mitk::ConcreteModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >, mitk::ConcreteModelParameterizerBase< mitk::NumericTwoTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< mitk::OneTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< mitk::StandardToftsModel >, mitk::ConcreteModelParameterizerBase< mitk::TwoTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< mitk::T2DecayModel >, mitk::ConcreteModelParameterizerBase< mitk::ExtendedToftsModel >, mitk::ConcreteModelParameterizerBase< TAIFBasedModel >, mitk::ConcreteModelParameterizerBase< mitk::ThreeStepLinearModel >, and mitk::ConcreteModelParameterizerBase< mitk::DescriptivePharmacokineticBrixModel >.

◆ GetDefaultInitialParameterization()

virtual ParametersType mitk::ModelParameterizerBase::GetDefaultInitialParameterization ( ) const
pure virtual

This function returns the default parameterization (e.g. initial parametrization for fitting) defined by the model developer for for the given model.

Implemented in mitk::ConcreteModelParameterizerBase< TModel >, mitk::ConcreteModelParameterizerBase< mitk::TwoCompartmentExchangeModel >, mitk::ConcreteModelParameterizerBase< mitk::TwoTissueCompartmentFDGModel >, mitk::ConcreteModelParameterizerBase< mitk::ExtendedOneTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< GenericParamModel >, mitk::ConcreteModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >, mitk::ConcreteModelParameterizerBase< mitk::NumericTwoTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< mitk::OneTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< mitk::StandardToftsModel >, mitk::ConcreteModelParameterizerBase< mitk::TwoTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< mitk::T2DecayModel >, mitk::ConcreteModelParameterizerBase< mitk::ExtendedToftsModel >, mitk::ConcreteModelParameterizerBase< TAIFBasedModel >, mitk::ConcreteModelParameterizerBase< mitk::ThreeStepLinearModel >, mitk::ConcreteModelParameterizerBase< mitk::DescriptivePharmacokineticBrixModel >, mitk::DescriptivePharmacokineticBrixModelParameterizer, mitk::DescriptivePharmacokineticBrixModelValueBasedParameterizer, mitk::NumericTwoCompartmentExchangeModelParameterizer, mitk::GenericParamModelParameterizer, mitk::ExtendedOneTissueCompartmentModelParameterizer, mitk::ExtendedToftsModelParameterizer, mitk::NumericTwoTissueCompartmentModelParameterizer, mitk::OneTissueCompartmentModelParameterizer, mitk::StandardToftsModelParameterizer, mitk::TwoCompartmentExchangeModelParameterizer, mitk::TwoTissueCompartmentFDGModelParameterizer, mitk::TwoTissueCompartmentModelParameterizer, mitk::T2DecayModelParameterizer, and mitk::ThreeStepLinearModelParameterizer.

Referenced by GetInitialParameterization().

◆ GetDefaultTimeGrid()

virtual const TimeGridType& mitk::ModelParameterizerBase::GetDefaultTimeGrid ( )
virtual

◆ GetGlobalStaticParameters()

virtual StaticParameterMapType mitk::ModelParameterizerBase::GetGlobalStaticParameters ( ) const
pure virtual

Implemented in mitk::DescriptivePharmacokineticBrixModelParameterizer, mitk::DescriptivePharmacokineticBrixModelValueBasedParameterizer, mitk::AIFBasedModelParameterizerBase< TAIFBasedModel >, mitk::AIFBasedModelParameterizerBase< mitk::TwoCompartmentExchangeModel >, mitk::AIFBasedModelParameterizerBase< mitk::TwoTissueCompartmentFDGModel >, mitk::AIFBasedModelParameterizerBase< mitk::ExtendedOneTissueCompartmentModel >, mitk::AIFBasedModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >, mitk::AIFBasedModelParameterizerBase< mitk::NumericTwoTissueCompartmentModel >, mitk::AIFBasedModelParameterizerBase< mitk::OneTissueCompartmentModel >, mitk::AIFBasedModelParameterizerBase< mitk::StandardToftsModel >, mitk::AIFBasedModelParameterizerBase< mitk::TwoTissueCompartmentModel >, mitk::AIFBasedModelParameterizerBase< mitk::ExtendedToftsModel >, mitk::GenericParamModelParameterizer, mitk::NumericTwoCompartmentExchangeModelParameterizer, mitk::ConcreteModelParameterizerBase< TModel >, mitk::ConcreteModelParameterizerBase< mitk::TwoCompartmentExchangeModel >, mitk::ConcreteModelParameterizerBase< mitk::TwoTissueCompartmentFDGModel >, mitk::ConcreteModelParameterizerBase< mitk::ExtendedOneTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< GenericParamModel >, mitk::ConcreteModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >, mitk::ConcreteModelParameterizerBase< mitk::NumericTwoTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< mitk::OneTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< mitk::StandardToftsModel >, mitk::ConcreteModelParameterizerBase< mitk::TwoTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< mitk::T2DecayModel >, mitk::ConcreteModelParameterizerBase< mitk::ExtendedToftsModel >, mitk::ConcreteModelParameterizerBase< TAIFBasedModel >, mitk::ConcreteModelParameterizerBase< mitk::ThreeStepLinearModel >, and mitk::ConcreteModelParameterizerBase< mitk::DescriptivePharmacokineticBrixModel >.

Referenced by mitk::modelFit::CreateFitInfoFromModelParameterizer().

◆ GetInitialParameterization() [1/2]

mitk::ModelParameterizerBase::ParametersType mitk::ModelParameterizerBase::GetInitialParameterization ( ) const

Returns the parameterization (e.g. initial parametrization for fitting) that should be used. If no ParameterizationDelegate is set (see SetInitialParameterizationDelegate()) it will just return the result of GetInitialParameterization().

Definition at line 27 of file mitkModelParameterizerBase.cpp.

References GetDefaultInitialParameterization(), and m_InitialDelegate.

◆ GetInitialParameterization() [2/2]

mitk::ModelParameterizerBase::ParametersType mitk::ModelParameterizerBase::GetInitialParameterization ( const IndexType &  currentPosition) const

Definition at line 38 of file mitkModelParameterizerBase.cpp.

References GetDefaultInitialParameterization(), m_InitialDelegate, and SetInitialParameterizationDelegate().

◆ GetLocalStaticParameters()

virtual StaticParameterMapType mitk::ModelParameterizerBase::GetLocalStaticParameters ( const IndexType &  currentPosition) const
pure virtual

Implemented in mitk::DescriptivePharmacokineticBrixModelParameterizer, mitk::DescriptivePharmacokineticBrixModelValueBasedParameterizer, mitk::ConcreteModelParameterizerBase< TModel >, mitk::ConcreteModelParameterizerBase< mitk::TwoCompartmentExchangeModel >, mitk::ConcreteModelParameterizerBase< mitk::TwoTissueCompartmentFDGModel >, mitk::ConcreteModelParameterizerBase< mitk::ExtendedOneTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< GenericParamModel >, mitk::ConcreteModelParameterizerBase< mitk::NumericTwoCompartmentExchangeModel >, mitk::ConcreteModelParameterizerBase< mitk::NumericTwoTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< mitk::OneTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< mitk::StandardToftsModel >, mitk::ConcreteModelParameterizerBase< mitk::TwoTissueCompartmentModel >, mitk::ConcreteModelParameterizerBase< mitk::T2DecayModel >, mitk::ConcreteModelParameterizerBase< mitk::ExtendedToftsModel >, mitk::ConcreteModelParameterizerBase< TAIFBasedModel >, mitk::ConcreteModelParameterizerBase< mitk::ThreeStepLinearModel >, and mitk::ConcreteModelParameterizerBase< mitk::DescriptivePharmacokineticBrixModel >.

◆ SetDefaultTimeGrid()

virtual void mitk::ModelParameterizerBase::SetDefaultTimeGrid ( TimeGridType  _arg)
virtual

Referenced by mitk::GenerateModelSignalPlotData().

◆ SetInitialParameterizationDelegate()

void mitk::ModelParameterizerBase::SetInitialParameterizationDelegate ( const InitialParameterizationDelegateBase *  delegate)

Possibility to set a custom strategy for defining the initial parameterization via a delegate.

Definition at line 50 of file mitkModelParameterizerBase.cpp.

References m_InitialDelegate.

Referenced by GetInitialParameterization().

Member Data Documentation

◆ m_DefaultTimeGrid

TimeGridType mitk::ModelParameterizerBase::m_DefaultTimeGrid
protected

The default time grid that should be set to generated models.

Definition at line 91 of file mitkModelParameterizerBase.h.

Referenced by mitk::ConcreteModelParameterizerBase< mitk::DescriptivePharmacokineticBrixModel >::GenerateParameterizedModel(), and ModelParameterizerBase().

◆ m_InitialDelegate

InitialParameterizationDelegateBase::ConstPointer mitk::ModelParameterizerBase::m_InitialDelegate
protected

Definition at line 88 of file mitkModelParameterizerBase.h.

Referenced by GetInitialParameterization(), and SetInitialParameterizationDelegate().

The documentation for this class was generated from the following files: