#include <mitkDICOMSegmentationIO.h>
Public Types | |
| typedef mitk::LabelSetImage | InputType |
| typedef itk::Image< unsigned short, 3 > | itkInputImageType |
| typedef itk::Image< short, 3 > | itkInternalImageType |
 Public Types inherited from mitk::IFileIO | |
| enum | ConfidenceLevel { Unsupported, PartiallySupported, Supported } |
| A confidence level describing the confidence of the reader or writer in handling the given data. More... | |
| typedef std::map< std::string, us::Any > | Options |
| Options for reading or writing data. More... | |
| typedef mitk::MessageAbstractDelegate1< float > | ProgressCallback |
Public Member Functions | |
| DICOMSegmentationIO () | |
| std::vector< BaseData::Pointer > | Read () override |
| Reads a number of DICOM segmentation from the file system. More... | |
| ConfidenceLevel | GetReaderConfidenceLevel () const override |
| void | Write () override |
| Write the base data to the specified location or output stream. More... | |
| ConfidenceLevel | GetWriterConfidenceLevel () const override |
| Public Member Functions inherited from mitk::AbstractFileIO | |
| Options | GetReaderOptions () const |
| us::Any | GetReaderOption (const std::string &name) const |
| void | SetReaderOptions (const Options &options) |
| void | SetReaderOption (const std::string &name, const us::Any &value) |
| Options | GetWriterOptions () const |
| us::Any | GetWriterOption (const std::string &name) const |
| void | SetWriterOptions (const Options &options) |
| void | SetWriterOption (const std::string &name, const us::Any &value) |
| std::pair< us::ServiceRegistration< IFileReader >, us::ServiceRegistration< IFileWriter > > | RegisterService (us::ModuleContext *context=us::GetModuleContext()) |
| Public Member Functions inherited from mitk::AbstractFileIOReader | |
| ConfidenceLevel | GetConfidenceLevel () const override |
| The confidence level of the reader or writer implementation. More... | |
| Public Member Functions inherited from mitk::AbstractFileReader | |
| void | SetInput (const std::string &location) override |
| Set the input location. More... | |
| void | SetInput (const std::string &location, std::istream *is) override |
| Set an input stream to read from. More... | |
| std::string | GetInputLocation () const override |
| Get the current input location. More... | |
| std::istream * | GetInputStream () const override |
| Get the input stream. More... | |
| MimeType | GetRegisteredMimeType () const |
| DataStorage::SetOfObjects::Pointer | Read (mitk::DataStorage &ds) override |
| Reads the specified file or input stream, loading its contents into the provided DataStorage. More... | |
| ConfidenceLevel | GetConfidenceLevel () const override |
| The confidence level of the reader or writer implementation. More... | |
| Options | GetOptions () const override |
| returns a list of the supported options More... | |
| us::Any | GetOption (const std::string &name) const override |
| void | SetOptions (const Options &options) override |
| void | SetOption (const std::string &name, const us::Any &value) override |
| void | AddProgressCallback (const ProgressCallback &callback) override |
| void | RemoveProgressCallback (const ProgressCallback &callback) override |
| us::ServiceRegistration< IFileReader > | RegisterService (us::ModuleContext *context=us::GetModuleContext()) |
| void | UnregisterService () |
| std::vector< std::string > | GetReadFiles () override |
| Public Member Functions inherited from mitk::IFileReader | |
| ~IFileReader () override | |
| virtual | ~IFileReader () |
| Public Member Functions inherited from mitk::IFileIO | |
| virtual | ~IFileIO () |
| Public Member Functions inherited from mitk::AbstractFileIOWriter | |
| ConfidenceLevel | GetConfidenceLevel () const override |
| The confidence level of the reader or writer implementation. More... | |
| Public Member Functions inherited from mitk::AbstractFileWriter | |
| void | SetInput (const BaseData *data) override |
| Set the input data for writing. More... | |
| const BaseData * | GetInput () const override |
| Get the input data set via SetInput(). More... | |
| void | SetOutputLocation (const std::string &location) override |
| Set the output location. More... | |
| std::string | GetOutputLocation () const override |
| Get the current output location. More... | |
| void | SetOutputStream (const std::string &location, std::ostream *os) override |
| Set an output stream for writing. More... | |
| std::ostream * | GetOutputStream () const override |
| Get the output stream. More... | |
| ConfidenceLevel | GetConfidenceLevel () const override |
| The confidence level of the reader or writer implementation. More... | |
| MimeType | GetRegisteredMimeType () const |
| Options | GetOptions () const override |
| returns a list of the supported options More... | |
| us::Any | GetOption (const std::string &name) const override |
| void | SetOptions (const Options &options) override |
| void | SetOption (const std::string &name, const us::Any &value) override |
| void | AddProgressCallback (const ProgressCallback &callback) override |
| void | RemoveProgressCallback (const ProgressCallback &callback) override |
| us::ServiceRegistration< IFileWriter > | RegisterService (us::ModuleContext *context=us::GetModuleContext()) |
| void | UnregisterService () |
| Public Member Functions inherited from mitk::IFileWriter | |
| ~IFileWriter () override | |
Additional Inherited Members | |
| Static Public Member Functions inherited from mitk::IFileIO | |
| static std::string | PROP_DESCRIPTION () |
| Service property name for a description. More... | |
| static std::string | PROP_MIMETYPE () |
| Service property name for the mime-type associated with this file writer. More... | |
| Static Public Member Functions inherited from mitk::IFileWriter | |
| static std::string | PROP_BASEDATA_TYPE () |
| Service property name for the supported mitk::BaseData sub-class. More... | |
| Protected Member Functions inherited from mitk::AbstractFileIO | |
| AbstractFileIO (const AbstractFileIO &other) | |
| AbstractFileIO (const std::string &baseDataType) | |
| AbstractFileIO (const std::string &baseDataType, const CustomMimeType &mimeType, const std::string &description) | |
| void | SetMimeType (const CustomMimeType &mimeType) |
| const CustomMimeType * | GetMimeType () const |
| void | SetReaderDescription (const std::string &description) |
| std::string | GetReaderDescription () const |
| void | SetWriterDescription (const std::string &description) |
| std::string | GetWriterDescription () const |
| void | SetDefaultReaderOptions (const Options &defaultOptions) |
| Options | GetDefaultReaderOptions () const |
| void | SetDefaultWriterOptions (const Options &defaultOptions) |
| Options | GetDefaultWriterOptions () const |
| void | SetReaderRanking (int ranking) |
| Set the service ranking for this file reader. More... | |
| int | GetReaderRanking () const |
| void | SetWriterRanking (int ranking) |
| int | GetWriterRanking () const |
| Protected Member Functions inherited from mitk::AbstractFileIOReader | |
| AbstractFileIOReader () | |
| AbstractFileIOReader (const CustomMimeType &mimeType, const std::string &description) | |
| Protected Member Functions inherited from mitk::AbstractFileReader | |
| AbstractFileReader () | |
| ~AbstractFileReader () override | |
| AbstractFileReader (const AbstractFileReader &other) | |
| AbstractFileReader (const CustomMimeType &mimeType, const std::string &description) | |
| virtual us::ServiceProperties | GetServiceProperties () const |
| virtual us::ServiceRegistration< CustomMimeType > | RegisterMimeType (us::ModuleContext *context) |
| void | SetMimeType (const CustomMimeType &mimeType) |
| const CustomMimeType * | GetMimeType () const |
| void | SetMimeTypePrefix (const std::string &prefix) |
| std::string | GetMimeTypePrefix () const |
| void | SetDescription (const std::string &description) |
| std::string | GetDescription () const |
| void | SetDefaultOptions (const Options &defaultOptions) |
| Options | GetDefaultOptions () const |
| void | SetRanking (int ranking) |
| Set the service ranking for this file reader. More... | |
| int | GetRanking () const |
| std::string | GetLocalFileName () const |
| Get a local file name for reading. More... | |
| virtual void | SetDefaultDataNodeProperties (DataNode *node, const std::string &filePath) |
| Protected Member Functions inherited from mitk::AbstractFileIOWriter | |
| AbstractFileIOWriter (const std::string &baseDataType) | |
| AbstractFileIOWriter (const std::string &baseDataType, const CustomMimeType &mimeType, const std::string &description) | |
| Protected Member Functions inherited from mitk::AbstractFileWriter | |
| ~AbstractFileWriter () override | |
| AbstractFileWriter (const AbstractFileWriter &other) | |
| AbstractFileWriter (const std::string &baseDataType) | |
| AbstractFileWriter (const std::string &baseDataType, const CustomMimeType &mimeType, const std::string &description) | |
| virtual us::ServiceProperties | GetServiceProperties () const |
| virtual us::ServiceRegistration< CustomMimeType > | RegisterMimeType (us::ModuleContext *context) |
| void | SetMimeType (const CustomMimeType &mimeType) |
| const CustomMimeType * | GetMimeType () const |
| void | SetMimeTypePrefix (const std::string &prefix) |
| std::string | GetMimeTypePrefix () const |
| void | SetDescription (const std::string &description) |
| Sets a human readable description of this writer. More... | |
| std::string | GetDescription () const |
| void | SetDefaultOptions (const Options &defaultOptions) |
| Options | GetDefaultOptions () const |
| void | SetRanking (int ranking) |
| Set the service ranking for this file writer. More... | |
| int | GetRanking () const |
| void | SetBaseDataType (const std::string &baseDataType) |
| Sets the name of the mitk::Basedata that this writer is able to handle. More... | |
| virtual std::string | GetBaseDataType () const |
| void | ValidateOutputLocation () const |
| Protected Attributes inherited from mitk::AbstractFileReader | |
| std::vector< std::string > | m_ReadFiles |
Detailed Description
Read and Writes a LabelSetImage to a dcm file
Definition at line 27 of file mitkDICOMSegmentationIO.h.
Member Typedef Documentation
◆ InputType
Definition at line 30 of file mitkDICOMSegmentationIO.h.
◆ itkInputImageType
| typedef itk::Image<unsigned short, 3> mitk::DICOMSegmentationIO::itkInputImageType |
Definition at line 31 of file mitkDICOMSegmentationIO.h.
◆ itkInternalImageType
| typedef itk::Image<short, 3> mitk::DICOMSegmentationIO::itkInternalImageType |
Definition at line 32 of file mitkDICOMSegmentationIO.h.
Constructor & Destructor Documentation
◆ DICOMSegmentationIO()
| mitk::DICOMSegmentationIO::DICOMSegmentationIO | ( | ) |
Definition at line 42 of file mitkDICOMSegmentationIO.cpp.
References mitk::IDICOMTagsOfInterest::AddTagOfInterest(), mitk::DICOMSegmentationConstants::ANATOMIC_REGION_CODE_MEANING_PATH(), mitk::DICOMSegmentationConstants::ANATOMIC_REGION_CODE_SCHEME_PATH(), mitk::DICOMSegmentationConstants::ANATOMIC_REGION_CODE_VALUE_PATH(), mitk::DICOMSegmentationConstants::ANATOMIC_REGION_SEQUENCE_PATH(), mitk::GetDicomTagsOfInterestService(), mitk::AbstractFileIO::RegisterService(), mitk::DICOMSegmentationConstants::SEGMENT_ALGORITHM_TYPE_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_CATEGORY_CODE_MEANING_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_CATEGORY_CODE_SCHEME_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_CATEGORY_CODE_VALUE_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_LABEL_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_MODIFIER_CODE_MEANING_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_MODIFIER_CODE_SCHEME_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_MODIFIER_CODE_VALUE_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_NUMBER_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_SEQUENCE_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_TYPE_CODE_MEANING_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_TYPE_CODE_SCHEME_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_TYPE_CODE_VALUE_PATH(), mitk::DICOMSegmentationConstants::SEGMENTED_PROPERTY_CATEGORY_SEQUENCE_PATH(), mitk::DICOMSegmentationConstants::SEGMENTED_PROPERTY_MODIFIER_SEQUENCE_PATH(), mitk::DICOMSegmentationConstants::SEGMENTED_PROPERTY_TYPE_SEQUENCE_PATH(), mitk::AbstractFileReader::SetRanking(), and mitk::AbstractFileWriter::SetRanking().
Referenced by Read().
Member Function Documentation
◆ GetReaderConfidenceLevel()
|
overridevirtual |
Reimplemented from mitk::AbstractFileIO.
Definition at line 247 of file mitkDICOMSegmentationIO.cpp.
References mitk::AbstractFileReader::GetLocalFileName(), mitk::AbstractFileIO::GetReaderConfidenceLevel(), mitk::IFileIO::Supported, and mitk::IFileIO::Unsupported.
◆ GetWriterConfidenceLevel()
|
overridevirtual |
Reimplemented from mitk::AbstractFileIO.
Definition at line 87 of file mitkDICOMSegmentationIO.cpp.
References mitk::Image::GetDimension(), mitk::AbstractFileWriter::GetInput(), mitk::BaseData::GetProperty(), mitk::AbstractFileIO::GetWriterConfidenceLevel(), MITK_INFO, mitk::IFileIO::Supported, and mitk::IFileIO::Unsupported.
◆ Read()
|
overridevirtual |
Reads a number of DICOM segmentation from the file system.
- Returns
- a vector of mitk::LabelSetImages
- Exceptions
-
throws an mitk::Exception if an error ocurrs
Implements mitk::AbstractFileReader.
Definition at line 271 of file mitkDICOMSegmentationIO.cpp.
References mitk::DICOMSegmentationConstants::ANATOMIC_REGION_CODE_MEANING_PATH(), mitk::DICOMSegmentationConstants::ANATOMIC_REGION_CODE_SCHEME_PATH(), mitk::DICOMSegmentationConstants::ANATOMIC_REGION_CODE_VALUE_PATH(), mitk::CastToMitkImage(), DICOMSegmentationIO(), mitk::DICOMTagPathToPropertyName(), mitk::ExtractPathsOfInterest(), mitk::GeneratePropertyNameForDICOMTag(), mitk::Label::GetColor(), mitk::GetDicomTagsOfInterestService(), mitk::AbstractFileWriter::GetInput(), mitk::AbstractFileReader::GetInputLocation(), mitk::LabelSetImage::GetLabelSet(), mitk::AbstractFileReader::GetLocalFileName(), mitk::Label::GetName(), mitk::PropertyList::GetProperty(), mitk::BaseData::GetPropertyList(), mitk::IDICOMTagsOfInterest::GetTagsOfInterest(), mitk::TemporoSpatialStringProperty::GetValue(), mitk::Label::GetValue(), mitk::TemporoSpatialStringProperty::GetValueAsString(), us::handler, image, mitk::LabelSet::IteratorConstBegin(), mitk::LabelSet::IteratorConstEnd(), MITK_ERROR, MITK_INFO, mitkThrow, mitk::LabelSetImage::New(), mitk::DICOMDCMTKTagScanner::New(), mitk::TemporoSpatialStringProperty::New(), mitk::DICOMSegmentationConstants::SEGMENT_ALGORITHM_TYPE_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_CATEGORY_CODE_MEANING_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_CATEGORY_CODE_SCHEME_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_CATEGORY_CODE_VALUE_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_LABEL_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_MODIFIER_CODE_MEANING_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_MODIFIER_CODE_SCHEME_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_MODIFIER_CODE_VALUE_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_NUMBER_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_TYPE_CODE_MEANING_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_TYPE_CODE_SCHEME_PATH(), mitk::DICOMSegmentationConstants::SEGMENT_TYPE_CODE_VALUE_PATH(), mitk::Label::SetColor(), mitk::Label::SetName(), mitk::SetProperties(), mitk::Label::SetProperty(), and mitk::Label::SetValue().
◆ Write()
|
overridevirtual |
Write the base data to the specified location or output stream.
This method must be implemented for each specific writer. Call GetOutputStream() first and check for a non-null stream to write to. If the output stream is nullptr, use GetOutputLocation() to write to a local file-system path.
If the reader cannot use streams directly, use GetLocalFile() to retrieve a temporary local file name instead.
- Exceptions
-
mitk::Exception
- See also
- GetLocalFile()
- IFileWriter::Write()
Implements mitk::AbstractFileWriter.
Definition at line 114 of file mitkDICOMSegmentationIO.cpp.
References mitk::AbstractFileWriter::LocalFile::GetFileName(), mitk::AbstractFileWriter::GetInput(), mitk::GenericLookupTable< T >::GetLookupTable(), mitk::LabelSet::IteratorConstBegin(), mitk::LabelSet::IteratorConstEnd(), MITK_ERROR, MITK_INFO, mitkThrow, mitk::ImageToItk< TOutputImage >::New(), mitk::LabelSetImage::SetActiveLayer(), and mitk::AbstractFileWriter::ValidateOutputLocation().
The documentation for this class was generated from the following files:
