MitkMCxyz.cpp File Reference

#include <math.h>
#include <stdio.h>
#include <string.h>
#include <sstream>
#include <stdlib.h>
#include <time.h>
#include <thread>
#include <chrono>
#include <vector>
#include <iostream>
#include "mitkCommandLineParser.h"
#include "mitkIOUtil.h"
#include "mitkImageCast.h"
#include <mitkImage.h>
#include <mitkImageReadAccessor.h>
#include <mitkCoreServices.h>
#include <mitkPropertyPersistence.h>
#include <mitkPropertyPersistenceInfo.h>
#include <mitkPAProbe.h>
#include <mitkPALightSource.h>
#include <mitkPAMonteCarloThreadHandler.h>
#include <sys/types.h>
#include <sys/stat.h>

Go to the source code of this file.

Macros
#define	ls
#define	PI
#define	ALIVE
#define	DEAD
#define	THRESHOLD
#define	CHANCE
#define	SQR(x)
#define	SIGN(x)
#define	ONE_MINUS_COSZERO
#define	MBIG
#define	MSEED
#define	MZ
#define	FAC

Functions
struct Location	initLocation (int x, int y, int z, double absorb)
bool	verbose (false)
void	runMonteCarlo (InputValues *inputValues, ReturnValues *returnValue, int thread, mitk::pa::MonteCarloThreadHandler::Pointer threadHandler)
int	main (int argc, char *argv[])

Variables
int	detector_x
int	detector_z
bool	interpretAsTime
bool	simulatePVFC
int	requestedNumberOfPhotons
float	requestedSimulationTime
int	concurentThreadsSupported
float	yOffset
bool	saveLegacy
std::string	normalizationFilename
std::string	inputFilename
std::string	outputFilename
mitk::pa::Probe::Pointer	m_PhotoacousticProbe

Macro Definition Documentation

ALIVE

#define ALIVE

Definition at line 59 of file MitkMCxyz.cpp.

Referenced by runMonteCarlo().

CHANCE

#define CHANCE

Definition at line 62 of file MitkMCxyz.cpp.

Referenced by runMonteCarlo().

DEAD

#define DEAD

Definition at line 60 of file MitkMCxyz.cpp.

Referenced by runMonteCarlo().

FAC

#define FAC

Definition at line 288 of file MitkMCxyz.cpp.

ls

#define ls

Definition at line 57 of file MitkMCxyz.cpp.

Referenced by mitk::LabelSetImage::AddLayer(), mitk::PlaneGeometryDataMapper2D::ApplyAllProperties(), mitk::SurfaceVtkMapper3D::ApplyAllProperties(), mitk::WeightedPointTransform::CalculateConfigChange(), mitk::SurfaceVtkMapper3D::CheckForClippingProperty(), mitk::TubeGraphVtkMapper3D::ClipPolyData(), mitk::LabelSetImage::Concatenate(), mitk::PlaneGeometryDataMapper2D::CreateVtkCrosshair(), mitk::PointSetVtkMapper2D::CreateVTKRenderObjects(), mitk::GPUVolumeMapper3D::DeinitCPU(), mitk::GPUVolumeMapper3D::DeinitRAY(), mitk::GPUVolumeMapper3D::GenerateDataCPU(), mitk::VtkGLMapperWrapper::GenerateDataForRenderer(), mitk::TubeGraphVtkMapper3D::GenerateDataForRenderer(), mitk::UnstructuredGridVtkMapper3D::GenerateDataForRenderer(), mitk::UnstructuredGridMapper2D::GenerateDataForRenderer(), mitk::SplineVtkMapper3D::GenerateDataForRenderer(), mitk::MeshVtkMapper3D::GenerateDataForRenderer(), mitk::EnhancedPointSetVtkMapper3D::GenerateDataForRenderer(), mitk::GPUVolumeMapper3D::GenerateDataForRenderer(), mitk::PlaneGeometryDataMapper2D::GenerateDataForRenderer(), mitk::SurfaceVtkMapper3D::GenerateDataForRenderer(), mitk::PointSetVtkMapper3D::GenerateDataForRenderer(), mitk::PointSetVtkMapper2D::GenerateDataForRenderer(), mitk::GPUVolumeMapper3D::GenerateDataRAY(), mitk::TubeGraphVtkMapper3D::GeneratePolyDataForFurcation(), mitk::TubeGraphVtkMapper3D::GeneratePolyDataForTube(), mitk::TubeGraphVtkMapper3D::GenerateTubeGraphData(), mitk::TextAnnotation2D::GetBoundsOnDisplay(), mitk::TextAnnotation2D::GetVtkActor2D(), mitk::GizmoMapper2D::GetVtkPolyData(), mitk::VtkGLMapperWrapper::GetVtkProp(), mitk::PlaneGeometryDataMapper2D::GetVtkProp(), mitk::GPUVolumeMapper3D::GetVtkProp(), mitk::TextAnnotation3D::GetVtkProp(), mitk::TextAnnotation2D::GetVtkProp(), mitk::SurfaceVtkMapper2D::GetVtkProp(), mitk::ColorBarAnnotation::GetVtkProp(), mitk::LabelAnnotation3D::GetVtkProp(), mitk::LogoAnnotation::GetVtkProp(), mitk::ScaleLegendAnnotation::GetVtkProp(), mitk::SurfaceVtkMapper3D::GetVtkProp(), mitk::PointSetVtkMapper2D::GetVtkProp(), mitk::GPUVolumeMapper3D::InitCPU(), mitk::GPUVolumeMapper3D::InitRAY(), mitk::GPUVolumeMapper3D::IsGPUEnabled(), mitk::GPUVolumeMapper3D::IsRAYEnabled(), mitk::ContourModelGLMapper2D::MitkRender(), mitk::ContourModelSetGLMapper2D::MitkRender(), mitk::TubeGraphVtkMapper3D::RenderTubeGraphPropertyInformation(), mitk::GizmoMapper2D::ResetMapper(), mitk::SurfaceVtkMapper3D::ResetMapper(), mitk::SurfaceVtkMapper2D::ResetMapper(), mitk::PointSetVtkMapper2D::ResetMapper(), runMonteCarlo(), mitk::TextAnnotation2D::SetBoundsOnDisplay(), mitk::GPUVolumeMapper3D::UpdateTransferFunctions(), mitk::TextAnnotation3D::UpdateVtkAnnotation(), mitk::ColorBarAnnotation::UpdateVtkAnnotation(), mitk::LogoAnnotation::UpdateVtkAnnotation(), mitk::LabelAnnotation3D::UpdateVtkAnnotation(), mitk::ScaleLegendAnnotation::UpdateVtkAnnotation(), and mitk::TextAnnotation2D::UpdateVtkAnnotation2D().

MBIG

#define MBIG

Definition at line 285 of file MitkMCxyz.cpp.

MSEED

#define MSEED

Definition at line 286 of file MitkMCxyz.cpp.

MZ

#define MZ

Definition at line 287 of file MitkMCxyz.cpp.

ONE_MINUS_COSZERO

#define ONE_MINUS_COSZERO

Definition at line 65 of file MitkMCxyz.cpp.

Referenced by runMonteCarlo().

PI

#define PI

Definition at line 58 of file MitkMCxyz.cpp.

Referenced by runMonteCarlo().

SIGN

#define SIGN

(

x

)

Definition at line 64 of file MitkMCxyz.cpp.

Referenced by runMonteCarlo().

SQR

#define SQR

(

x

)

Definition at line 63 of file MitkMCxyz.cpp.

THRESHOLD

#define THRESHOLD

Definition at line 61 of file MitkMCxyz.cpp.

Referenced by runMonteCarlo().

Function Documentation

initLocation()

struct Location initLocation	(	int	x,
		int	y,
		int	z,
		double	absorb
	)

Definition at line 75 of file MitkMCxyz.cpp.

References mitk::ImageAccessorBase::GetData(), inputFilename, mitkThrow, normalizationFilename, simulatePVFC, verbose(), and yOffset.

Referenced by runMonteCarlo().

main()

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 630 of file MitkMCxyz.cpp.

References mitkCommandLineParser::addArgument(), mitk::IPropertyPersistence::AddInfo(), us::any_cast(), mitkCommandLineParser::beginGroup(), mitkCommandLineParser::Bool, concurentThreadsSupported, mitk::Image::CopyMemory, detector_x, detector_z, mitkCommandLineParser::endGroup(), mitk::eps, mitkCommandLineParser::File, mitkCommandLineParser::Float, mitk::CoreServices::GetPropertyPersistence(), mitkCommandLineParser::Input, inputFilename, mitkCommandLineParser::Int, interpretAsTime, m_PhotoacousticProbe, mitk::PropertyPersistenceInfo::New(), mitk::Image::New(), normalizationFilename, mitkCommandLineParser::Output, outputFilename, mitkCommandLineParser::parseArguments(), requestedNumberOfPhotons, requestedSimulationTime, runMonteCarlo(), mitk::IOUtil::Save(), mitkCommandLineParser::setArgumentPrefix(), mitkCommandLineParser::setCategory(), mitkCommandLineParser::setContributor(), mitkCommandLineParser::setDescription(), mitkCommandLineParser::setTitle(), simulatePVFC, verbose(), and yOffset.

runMonteCarlo()

void runMonteCarlo	(	InputValues *	inputValues,
		ReturnValues *	returnValue,
		int	thread,
		mitk::pa::MonteCarloThreadHandler::Pointer	threadHandler
	)

Definition at line 988 of file MitkMCxyz.cpp.

References ALIVE, CHANCE, DEAD, detector_x, detector_z, info(), initLocation(), ls, m_PhotoacousticProbe, MITK_INFO, ONE_MINUS_COSZERO, PI, SIGN, THRESHOLD, verbose(), mitk::pa::LightSource::PhotonInformation::xAngle, mitk::pa::LightSource::PhotonInformation::xPosition, mitk::pa::LightSource::PhotonInformation::yAngle, yOffset, mitk::pa::LightSource::PhotonInformation::yPosition, mitk::pa::LightSource::PhotonInformation::zAngle, and mitk::pa::LightSource::PhotonInformation::zPosition.

Referenced by main().

verbose()

bool verbose

(

false

)

Referenced by initLocation(), main(), and runMonteCarlo().

Variable Documentation

concurentThreadsSupported

int concurentThreadsSupported

Definition at line 621 of file MitkMCxyz.cpp.

Referenced by main().

detector_x

int detector_x

Definition at line 615 of file MitkMCxyz.cpp.

Referenced by main(), and runMonteCarlo().

detector_z

int detector_z

Definition at line 616 of file MitkMCxyz.cpp.

Referenced by main(), and runMonteCarlo().

inputFilename

std::string inputFilename

Definition at line 625 of file MitkMCxyz.cpp.

Referenced by initLocation(), and main().

interpretAsTime

bool interpretAsTime

Definition at line 617 of file MitkMCxyz.cpp.

Referenced by main().

m_PhotoacousticProbe

mitk::pa::Probe::Pointer m_PhotoacousticProbe

Definition at line 628 of file MitkMCxyz.cpp.

Referenced by main(), and runMonteCarlo().

normalizationFilename

std::string normalizationFilename

Definition at line 624 of file MitkMCxyz.cpp.

Referenced by initLocation(), and main().

outputFilename

std::string outputFilename

Definition at line 626 of file MitkMCxyz.cpp.

Referenced by main().

requestedNumberOfPhotons

int requestedNumberOfPhotons

Definition at line 619 of file MitkMCxyz.cpp.

Referenced by main().

requestedSimulationTime

float requestedSimulationTime

Definition at line 620 of file MitkMCxyz.cpp.

Referenced by main().

saveLegacy

bool saveLegacy

Definition at line 623 of file MitkMCxyz.cpp.

simulatePVFC

bool simulatePVFC

Definition at line 618 of file MitkMCxyz.cpp.

Referenced by initLocation(), and main().

yOffset

float yOffset

Definition at line 622 of file MitkMCxyz.cpp.

Referenced by mitk::CorrectorAlgorithm::ImprovedHeimannCorrectionAlgorithm(), initLocation(), mitk::pa::IOUtil::LoadFluenceSimulation(), main(), mitk::pa::FluenceYOffsetPair::operator=(), and runMonteCarlo().