CurveDescriptorMiniApp.cpp File Reference

#include <string>
#include "itksys/SystemTools.hxx"
#include "mitkCommandLineParser.h"
#include <mitkIOUtil.h>
#include <mitkPreferenceListReaderOptionsFunctor.h>
#include <mitkModelFitCmdAppsHelper.h>
#include <mitkExtractTimeGrid.h>
#include <mitkPixelBasedDescriptionParameterImageGenerator.h>
#include <mitkAreaUnderTheCurveDescriptionParameter.h>
#include <mitkAreaUnderFirstMomentDescriptionParameter.h>
#include <mitkMeanResidenceTimeDescriptionParameter.h>
#include <mitkTimeToPeakCurveDescriptionParameter.h>

Go to the source code of this file.

Functions
bool	verbose (false)
bool	preview (false)
void	onFitEvent (::itk::Object *caller, const itk::EventObject &event, void *)
void	setupParser (mitkCommandLineParser &parser)
bool	configureApplicationSettings (std::map< std::string, us::Any > parsedArgs)
void	ConfigureFunctor (mitk::CurveParameterFunctor *functor)
void	doDescription ()
void	doPreview ()
int	main (int argc, char *argv[])

Variables
std::string	inFilename
std::string	outFileName
std::string	maskFileName
mitk::Image::Pointer	image
mitk::Image::Pointer	mask

Function Documentation

configureApplicationSettings()

bool configureApplicationSettings

(

std::map< std::string, us::Any >

parsedArgs

)

Definition at line 95 of file CurveDescriptorMiniApp.cpp.

References us::any_cast(), inFilename, maskFileName, outFileName, preview(), and verbose().

Referenced by main().

ConfigureFunctor()

void ConfigureFunctor

(

mitk::CurveParameterFunctor *

functor

)

Definition at line 123 of file CurveDescriptorMiniApp.cpp.

References mitk::TimeToPeakCurveDescriptionParameter::New(), mitk::AreaUnderTheCurveDescriptionParameter::New(), mitk::AreaUnderFirstMomentDescriptionParameter::New(), mitk::MeanResidenceTimeDescriptionParameter::New(), and mitk::CurveParameterFunctor::RegisterDescriptionParameter().

Referenced by doDescription(), and doPreview().

doDescription()

void doDescription

(

)

Definition at line 138 of file CurveDescriptorMiniApp.cpp.

References ConfigureFunctor(), mitk::ExtractTimeGrid(), mitk::CurveParameterFunctor::New(), mitk::PixelBasedDescriptionParameterImageGenerator::New(), onFitEvent(), outFileName, and mitk::storeParameterResultImage().

Referenced by main().

doPreview()

void doPreview

(

)

Definition at line 164 of file CurveDescriptorMiniApp.cpp.

References ConfigureFunctor(), mitk::generateModelFitResultImagePath(), mitk::CurveParameterFunctor::New(), and outFileName.

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

[do processing]

Definition at line 178 of file CurveDescriptorMiniApp.cpp.

References configureApplicationSettings(), doDescription(), doPreview(), mitkCommandLineParser::helpText(), inFilename, maskFileName, MITK_ERROR, mitkCommandLineParser::parseArguments(), preview(), and setupParser().

onFitEvent()

void onFitEvent	(	::itk::Object *	caller,
		const itk::EventObject &	event,
		void *
	)

Definition at line 45 of file CurveDescriptorMiniApp.cpp.

References mitk::PixelBasedDescriptionParameterImageGenerator::GetProgress().

Referenced by doDescription().

preview()

bool preview

(

false

)

Referenced by configureApplicationSettings(), and main().

setupParser()

void setupParser

(

mitkCommandLineParser &

parser

)

[create parser]

[add arguments]

[add arguments]

Definition at line 57 of file CurveDescriptorMiniApp.cpp.

References mitkCommandLineParser::addArgument(), mitkCommandLineParser::beginGroup(), mitkCommandLineParser::Bool, mitkCommandLineParser::endGroup(), mitkCommandLineParser::File, mitkCommandLineParser::Input, mitkCommandLineParser::Output, mitkCommandLineParser::setArgumentPrefix(), mitkCommandLineParser::setCategory(), mitkCommandLineParser::setContributor(), mitkCommandLineParser::setDescription(), and mitkCommandLineParser::setTitle().

Referenced by main().

verbose()

bool verbose

(

false

)

Referenced by configureApplicationSettings().

Variable Documentation

image

mitk::Image::Pointer image

Definition at line 41 of file CurveDescriptorMiniApp.cpp.

inFilename

std::string inFilename

Definition at line 36 of file CurveDescriptorMiniApp.cpp.

Referenced by configureApplicationSettings(), and main().

mask

mitk::Image::Pointer mask

Definition at line 42 of file CurveDescriptorMiniApp.cpp.

maskFileName

std::string maskFileName

Definition at line 38 of file CurveDescriptorMiniApp.cpp.

Referenced by configureApplicationSettings(), and main().

outFileName

std::string outFileName

Definition at line 37 of file CurveDescriptorMiniApp.cpp.

Referenced by configureApplicationSettings(), doDescription(), and doPreview().