CLBrainMask.cpp File Reference

#include "time.h"
#include <sstream>
#include <fstream>
#include <mitkIOUtil.h>
#include "mitkCommandLineParser.h"
#include "itkImageRegionIterator.h"
#include <mitkITKImageImport.h>
#include <mitkImageCast.h>
#include <mitkImageAccessByItk.h>
#include <itkLabelStatisticsImageFilter.h>
#include <itkMinimumMaximumImageCalculator.h>

Go to the source code of this file.

Macros
#define	mitkCLPolyToNrrd_cpp

Typedefs
typedef itk::Image< double, 3 >	FloatImageType
typedef itk::Image< unsigned char, 3 >	MaskImageType

Functions
template<typename TPixel , unsigned int VImageDimension>
void	Normalize (itk::Image< TPixel, VImageDimension > *itkImage, mitk::Image::Pointer im2, mitk::Image::Pointer mask1, std::string output)
int	main (int argc, char *argv[])

Macro Definition Documentation

mitkCLPolyToNrrd_cpp

#define mitkCLPolyToNrrd_cpp

Definition at line 13 of file CLBrainMask.cpp.

Typedef Documentation

FloatImageType

typedef itk::Image< double, 3 > FloatImageType

Definition at line 31 of file CLBrainMask.cpp.

MaskImageType

typedef itk::Image< unsigned char, 3 > MaskImageType

Definition at line 32 of file CLBrainMask.cpp.

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 64 of file CLBrainMask.cpp.

References AccessByItk_3, mitkCommandLineParser::addArgument(), mitkCommandLineParser::File, image, mitkCommandLineParser::Image, mitkCommandLineParser::Input, mask, Normalize(), mitkCommandLineParser::Output, mitkCommandLineParser::parseArguments(), mitkCommandLineParser::setArgumentPrefix(), mitkCommandLineParser::setCategory(), mitkCommandLineParser::setContributor(), mitkCommandLineParser::setDescription(), and mitkCommandLineParser::setTitle().

Normalize()

template<typename TPixel , unsigned int VImageDimension>

void Normalize	(	itk::Image< TPixel, VImageDimension > *	itkImage,
		mitk::Image::Pointer	im2,
		mitk::Image::Pointer	mask1,
		std::string	output
	)

Definition at line 36 of file CLBrainMask.cpp.

References mitk::CastToItkImage(), mitk::ImportItkImage(), and mitk::IOUtil::Save().

Referenced by mitk::ComputeContourSetNormalsFilter::GenerateData(), mitk::ReduceContourSetFilter::GenerateData(), main(), mitk::VectorImageMapper2D::Paint(), mitk::BoundingShapeVtkMapper2D::SetDefaultProperties(), and vtkVolumeTextureMapper3DComputeRGBA().