Medical Imaging Interaction Toolkit
2023.12.00
Medical Imaging Interaction Toolkit
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superclass for specific NDI tracking Devices that use serial communication. More...
#include <mitkNDITrackingDevice.h>
Public Types | |
typedef std::vector< NDIPassiveTool::Pointer > | Tool6DContainerType |
List of 6D tools of the correct type for this tracking device. More... | |
typedef mitk::TrackingDeviceType | NDITrackingDeviceType |
This enumeration includes the two types of NDI tracking devices (Polaris, Aurora). More... | |
typedef mitk::SerialCommunication::PortNumber | PortNumber |
Port number of the serial connection. More... | |
typedef mitk::SerialCommunication::BaudRate | BaudRate |
Baud rate of the serial connection. More... | |
typedef mitk::SerialCommunication::DataBits | DataBits |
Number of data bits used in the serial connection. More... | |
typedef mitk::SerialCommunication::Parity | Parity |
Parity mode used in the serial connection. More... | |
typedef mitk::SerialCommunication::StopBits | StopBits |
Number of stop bits used in the serial connection. More... | |
typedef mitk::SerialCommunication::HardwareHandshake | HardwareHandshake |
Hardware handshake mode of the serial connection. More... | |
typedef mitk::NDIPassiveTool::TrackingPriority | TrackingPriority |
Tracking priority used for tracking a tool. More... | |
Public Types inherited from mitk::TrackingDevice | |
enum | RotationMode { RotationStandard, RotationTransposed } |
enum | TrackingDeviceState { Setup, Ready, Tracking } |
Public Member Functions | |
mitkClassMacro (NDITrackingDevice, TrackingDevice) | |
Pointer | Clone () const |
bool | OpenConnection () override |
Set the type of the NDI Tracking Device because it can not jet handle this itself. More... | |
bool | CloseConnection () override |
Closes the connection. More... | |
bool | InitializeWiredTools () |
void | SetRotationMode (RotationMode r) override |
virtual mitk::TrackingDeviceType | TestConnection () |
TestConnection() tries to connect to a NDI tracking device on the current port/device and returns which device it has found. More... | |
bool | DiscoverWiredTools () |
retrieves all wired tools from the tracking device More... | |
bool | StartTracking () override |
Start the tracking. More... | |
TrackingTool * | GetTool (unsigned int toolNumber) const override |
return the tool with index toolNumber More... | |
mitk::TrackingTool * | GetToolByName (std::string name) const override |
Returns the tool with the given tool name. More... | |
unsigned int | GetToolCount () const override |
return current number of tools More... | |
mitk::TrackingTool * | AddTool (const char *toolName, const char *fileName, TrackingPriority p=NDIPassiveTool::Dynamic) |
Create a passive 6D tool with toolName and fileName and add it to the list of tools. More... | |
virtual bool | RemoveTool (TrackingTool *tool) |
Remove a passive 6D tool from the list of tracked tools. More... | |
virtual bool | UpdateTool (mitk::TrackingTool *tool) |
reloads the srom file and reinitializes the tool More... | |
virtual void | SetPortNumber (const PortNumber _arg) |
set port number for serial communication More... | |
virtual PortNumber | GetPortNumber () const |
virtual void | SetDeviceName (std::string _arg) |
returns the port number for serial communication More... | |
virtual const char * | GetDeviceName () const |
virtual void | SetBaudRate (const BaudRate _arg) |
returns the device name for serial communication More... | |
virtual BaudRate | GetBaudRate () const |
virtual void | SetDataBits (const DataBits _arg) |
returns the baud rate for serial communication More... | |
virtual DataBits | GetDataBits () const |
virtual void | SetParity (const Parity _arg) |
returns the data bits for serial communication More... | |
virtual Parity | GetParity () const |
virtual void | SetStopBits (const StopBits _arg) |
returns the parity mode More... | |
virtual StopBits | GetStopBits () const |
virtual void | SetHardwareHandshake (const HardwareHandshake _arg) |
returns the number of stop bits More... | |
virtual HardwareHandshake | GetHardwareHandshake () const |
virtual void | SetIlluminationActivationRate (const IlluminationActivationRate _arg) |
returns the hardware handshake setting More... | |
virtual IlluminationActivationRate | GetIlluminationActivationRate () const |
virtual void | SetDataTransferMode (const DataTransferMode _arg) |
returns the activation rate of IR illumator for polaris More... | |
virtual DataTransferMode | GetDataTransferMode () const |
virtual bool | Beep (unsigned char count) |
returns the data transfer mode More... | |
NDIErrorCode | GetErrorCode (const std::string *input) |
returns the error code for a string that contains an error code in hexadecimal format More... | |
virtual bool | SetOperationMode (OperationMode mode) |
set operation mode to 6D tool tracking, 3D marker tracking or 6D&3D hybrid tracking (see OperationMode) More... | |
virtual OperationMode | GetOperationMode () |
get current operation mode More... | |
virtual bool | GetMarkerPositions (MarkerPointContainerType *markerpositions) |
Get 3D marker positions (operation mode must be set to MarkerTracking3D or HybridTracking) More... | |
virtual int | GetMajorFirmwareRevisionNumber () |
Get major revision number from tracking device should not be called directly after starting to track. More... | |
virtual const char * | GetFirmwareRevisionNumber () |
Get revision number from tracking device as string should not be called directly after starting to track. More... | |
bool | AutoDetectToolsAvailable () override |
bool | AddSingleToolIsAvailable () override |
mitk::NavigationToolStorage::Pointer | AutoDetectTools () override |
virtual void | TrackTools () |
TrackTools() continuously polls serial interface for new 6d tool positions until StopTracking is called. More... | |
virtual void | TrackMarkerPositions () |
continuously polls serial interface for new 3D marker positions until StopTracking is called. More... | |
virtual void | TrackToolsAndMarkers () |
continuously polls serial interface for new 3D marker positions and 6D tool positions until StopTracking is called. More... | |
void | ThreadStartTracking () |
start method for the tracking thread. More... | |
Public Member Functions inherited from mitk::TrackingDevice | |
mitkClassMacroItkParent (TrackingDevice, itk::Object) | |
virtual bool | StopTracking () |
stop retrieving tracking data from the device. stop retrieving tracking data from the device. This may only be called after StartTracking was called (e.g. the object is in Tracking mode). This will change the object state from Tracking to Ready. More... | |
virtual RotationMode | GetRotationMode () const |
TrackingDeviceState | GetState () const |
return current object state (Setup, Ready or Tracking) More... | |
TrackingDeviceType | GetType () const |
Deprecated! Use the more specific getData or GetTrackingDeviceName instead. return device type identifier. More... | |
void | SetType (TrackingDeviceType type) |
Deprecated! Use the more specific setDeviceData instead. set device type. More... | |
std::string | GetTrackingDeviceName () |
Convenient Method to get the Name of the Tracking Device. This is identical with GetData().Line and can be used to compare with TrackingDeviceTypeInformation::GetTrackingDeviceName() to check if you have a specific device. More... | |
TrackingDeviceData | GetData () const |
return device data More... | |
void | SetData (TrackingDeviceData data) |
set device type More... | |
virtual bool | IsDeviceInstalled () |
Static Public Member Functions | |
static Pointer | New () |
Protected Types | |
typedef std::vector< std::string > | NDITrackingVolumeContainerType |
vector of tracking volumes More... | |
typedef std::vector< int > | TrackingVolumeDimensionType |
List of the supported tracking volume dimensions. More... | |
Protected Member Functions | |
virtual bool | GetSupportedVolumes (unsigned int *numberOfVolumes, NDITrackingVolumeContainerType *volumes, TrackingVolumeDimensionType *volumesDimensions) |
Get number of supported tracking volumes, a vector containing the supported volumes and a vector containing the signed dimensions in mm. For each volume 10 boundaries are stored in the order of the supported volumes (see AURORA API GUIDE: SFLIST p.54). More... | |
virtual bool | SetVolume (mitk::TrackingDeviceData volume) |
Sets the desired tracking volume. Returns true if the volume type could be set. It is set in the OpenConnection() Method and sets the tracking volume out of m_Data. More... | |
virtual bool | InternalAddTool (NDIPassiveTool *tool) |
Add a passive 6D tool to the list of tracked tools. This method is used by AddTool. More... | |
virtual void | InvalidateAll () |
invalidate all tools More... | |
NDIPassiveTool * | GetInternalTool (std::string portHandle) |
returns the tool object that has been assigned the port handle or nullptr if no tool can be found More... | |
NDIErrorCode | FreePortHandles () |
free all port handles that need to be freed More... | |
NDIErrorCode | Send (const std::string *message, bool addCRC=true) |
Send message to tracking device. More... | |
NDIErrorCode | Receive (std::string *answer, unsigned int numberOfBytes) |
receive numberOfBytes bytes from tracking device More... | |
NDIErrorCode | ReceiveByte (char *answer) |
lightweight receive function, that reads just one byte More... | |
NDIErrorCode | ReceiveLine (std::string *answer) |
receive characters until the first LF (The LF is included in the answer string) More... | |
void | ClearSendBuffer () |
empty send buffer of serial communication interface More... | |
void | ClearReceiveBuffer () |
empty receive buffer of serial communication interface More... | |
const std::string | CalcCRC (const std::string *input) |
returns the CRC16 for input as a std::string More... | |
NDITrackingDevice () | |
Constructor. More... | |
~NDITrackingDevice () override | |
Destructor. More... | |
Protected Member Functions inherited from mitk::TrackingDevice | |
void | SetState (TrackingDeviceState state) |
change object state More... | |
TrackingDevice () | |
~TrackingDevice () override | |
Protected Attributes | |
std::string | m_DeviceName |
Device Name. More... | |
PortNumber | m_PortNumber |
COM Port Number. More... | |
BaudRate | m_BaudRate |
COM Port Baud Rate. More... | |
DataBits | m_DataBits |
Number of Data Bits per token. More... | |
Parity | m_Parity |
Parity mode for communication. More... | |
StopBits | m_StopBits |
number of stop bits per token More... | |
HardwareHandshake | m_HardwareHandshake |
which tracking volume is currently used (if device supports multiple volumes) ( More... | |
IlluminationActivationRate | m_IlluminationActivationRate |
update rate of IR illuminator for Polaris More... | |
DataTransferMode | m_DataTransferMode |
use TX (text) or BX (binary) ( More... | |
Tool6DContainerType | m_6DTools |
list of 6D tools More... | |
std::mutex | m_ToolsMutex |
mutex for coordinated access of tool container More... | |
mitk::SerialCommunication::Pointer | m_SerialCommunication |
serial communication interface More... | |
std::mutex | m_SerialCommunicationMutex |
mutex for coordinated access of serial communication interface More... | |
NDIProtocol::Pointer | m_DeviceProtocol |
create and parse NDI protocol strings More... | |
std::thread | m_Thread |
ID of tracking thread. More... | |
OperationMode | m_OperationMode |
tracking mode (6D tool tracking, 3D marker tracking,...) More... | |
std::mutex | m_MarkerPointsMutex |
mutex for marker point data container More... | |
MarkerPointContainerType | m_MarkerPoints |
container for markers (3D point tracking mode) More... | |
Protected Attributes inherited from mitk::TrackingDevice | |
TrackingDeviceData | m_Data |
current device Data More... | |
bool | m_StopTracking |
signal stop to tracking thread More... | |
std::mutex | m_StopTrackingMutex |
mutex to control access to m_StopTracking More... | |
std::mutex | m_TrackingFinishedMutex |
mutex to manage control flow of StopTracking() More... | |
std::mutex | m_StateMutex |
mutex to control access to m_State More... | |
RotationMode | m_RotationMode |
defines the rotation mode Standard or Transposed, Standard is default More... | |
superclass for specific NDI tracking Devices that use serial communication.
Documentation implements the TrackingDevice interface for NDI tracking devices (POLARIS, AURORA)
Definition at line 40 of file mitkNDITrackingDevice.h.
Baud rate of the serial connection.
Definition at line 49 of file mitkNDITrackingDevice.h.
Number of data bits used in the serial connection.
Definition at line 50 of file mitkNDITrackingDevice.h.
Hardware handshake mode of the serial connection.
Definition at line 53 of file mitkNDITrackingDevice.h.
This enumeration includes the two types of NDI tracking devices (Polaris, Aurora).
Definition at line 47 of file mitkNDITrackingDevice.h.
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vector of tracking volumes
Definition at line 220 of file mitkNDITrackingDevice.h.
Parity mode used in the serial connection.
Definition at line 51 of file mitkNDITrackingDevice.h.
Port number of the serial connection.
Definition at line 48 of file mitkNDITrackingDevice.h.
Number of stop bits used in the serial connection.
Definition at line 52 of file mitkNDITrackingDevice.h.
typedef std::vector<NDIPassiveTool::Pointer> mitk::NDITrackingDevice::Tool6DContainerType |
List of 6D tools of the correct type for this tracking device.
Definition at line 45 of file mitkNDITrackingDevice.h.
Tracking priority used for tracking a tool.
Definition at line 54 of file mitkNDITrackingDevice.h.
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List of the supported tracking volume dimensions.
Definition at line 221 of file mitkNDITrackingDevice.h.
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Constructor.
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Destructor.
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Reimplemented from mitk::TrackingDevice.
mitk::TrackingTool* mitk::NDITrackingDevice::AddTool | ( | const char * | toolName, |
const char * | fileName, | ||
TrackingPriority | p = NDIPassiveTool::Dynamic |
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Create a passive 6D tool with toolName and fileName and add it to the list of tools.
This method will create a new NDIPassiveTool object, load the SROM file fileName, set the tool name toolName and the tracking priority p and then add it to the list of tools. It returns a pointer of type mitk::TrackingTool to the tool that can be used to read tracking data from it. This is the only way to add tools to NDITrackingDevice.
mitk::IGTHardwareException | Throws an exception if there are errors while adding the tool. |
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Autodetects tools from this device and returns them as a navigation tool storage.
Reimplemented from mitk::TrackingDevice.
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Reimplemented from mitk::TrackingDevice.
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returns the data transfer mode
Beep the tracking device 1 to 9 times
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returns the CRC16 for input as a std::string
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empty receive buffer of serial communication interface
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empty send buffer of serial communication interface
Pointer mitk::NDITrackingDevice::Clone | ( | ) | const |
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Closes the connection.
CloseConnection() resets the tracking device, invalidates all tools and then closes the serial port.
Implements mitk::TrackingDevice.
bool mitk::NDITrackingDevice::DiscoverWiredTools | ( | ) |
retrieves all wired tools from the tracking device
This method queries the tracking device for all wired tools, initializes them and creates TrackingTool representation objects for them
mitk::IGTHardwareException | Throws an exception if there are errors while connecting to the device. |
mitk::IGTException | Throws a normal IGT exception if an error occures which is not related to the hardware. |
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free all port handles that need to be freed
This method retrieves a list of all port handles that need to be freed (e.g. tool got disconnected) and frees the handles at the tracking device and it removes the tools from the internal tool list
mitk::IGTHardwareException | Throws an exception if there are errors while communicating with the device. |
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NDIErrorCode mitk::NDITrackingDevice::GetErrorCode | ( | const std::string * | input | ) |
returns the error code for a string that contains an error code in hexadecimal format
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Get revision number from tracking device as string should not be called directly after starting to track.
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returns the tool object that has been assigned the port handle or nullptr if no tool can be found
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Get major revision number from tracking device should not be called directly after starting to track.
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Get 3D marker positions (operation mode must be set to MarkerTracking3D or HybridTracking)
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get current operation mode
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Get number of supported tracking volumes, a vector containing the supported volumes and a vector containing the signed dimensions in mm. For each volume 10 boundaries are stored in the order of the supported volumes (see AURORA API GUIDE: SFLIST p.54).
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return the tool with index toolNumber
Implements mitk::TrackingDevice.
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Returns the tool with the given tool name.
Note: subclasses can and should implement optimized versions of this method
Reimplemented from mitk::TrackingDevice.
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return current number of tools
Implements mitk::TrackingDevice.
bool mitk::NDITrackingDevice::InitializeWiredTools | ( | ) |
mitk::IGTHardwareException | Throws an exception if there are errors while connecting to the device. |
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Add a passive 6D tool to the list of tracked tools. This method is used by AddTool.
mitk::IGTHardwareException | Throws an exception if there are errors while adding the tool. |
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invalidate all tools
mitk::NDITrackingDevice::mitkClassMacro | ( | NDITrackingDevice | , |
TrackingDevice | |||
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Set the type of the NDI Tracking Device because it can not jet handle this itself.
initialize the connection to the tracking device
OpenConnection() establishes the connection to the tracking device by:
mitk::IGTHardwareException | Throws an exception if there are errors while connecting to the device. |
mitk::IGTException | Throws a normal IGT exception if an error occures which is not related to the hardware. |
Implements mitk::TrackingDevice.
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receive numberOfBytes bytes from tracking device
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lightweight receive function, that reads just one byte
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receive characters until the first LF (The LF is included in the answer string)
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Remove a passive 6D tool from the list of tracked tools.
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Send message to tracking device.
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returns the device name for serial communication
set baud rate for serial communication
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returns the baud rate for serial communication
set number of data bits
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returns the activation rate of IR illumator for polaris
set data transfer mode to text (TX) or binary (BX).
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returns the port number for serial communication
set device name (e.g. COM1, /dev/ttyUSB0). If this is set, PortNumber will be ignored
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returns the number of stop bits
set use hardware handshake for serial communication
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returns the hardware handshake setting
set activation rate of IR illumator for polaris
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set operation mode to 6D tool tracking, 3D marker tracking or 6D&3D hybrid tracking (see OperationMode)
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returns the data bits for serial communication
set parity mode
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set port number for serial communication
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Sets the rotation mode of this class. See documentation of enum RotationMode for details on the different modes.
Reimplemented from mitk::TrackingDevice.
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returns the parity mode
set number of stop bits
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Sets the desired tracking volume. Returns true if the volume type could be set. It is set in the OpenConnection() Method and sets the tracking volume out of m_Data.
mitk::IGTHardwareException | Throws an IGT hardware exception if the volume could not be set. |
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Start the tracking.
A new thread is created, which continuously reads the position and orientation information of each tool and stores them inside the tools. Depending on the current operation mode (see SetOperationMode()), either the 6D tools (ToolTracking6D), 5D tools (ToolTracking5D), 3D marker positions (MarkerTracking3D) or both 6D tools and 3D markers (HybridTracking) are updated. Call StopTracking() to stop the tracking thread.
Implements mitk::TrackingDevice.
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TestConnection() tries to connect to a NDI tracking device on the current port/device and returns which device it has found.
TestConnection() tries to connect to a NDI tracking device on the current port/device.
mitk::IGTHardwareException | Throws an exception if there are errors while connecting to the device. |
void mitk::NDITrackingDevice::ThreadStartTracking | ( | ) |
start method for the tracking thread.
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continuously polls serial interface for new 3D marker positions until StopTracking is called.
Continuously tracks the 3D position of all markers until StopTracking() is called. This function is executed by the tracking thread (through StartTracking() and ThreadStartTracking()). It should not be called directly.
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TrackTools() continuously polls serial interface for new 6d tool positions until StopTracking is called.
Continuously tracks the 6D position of all tools until StopTracking() is called. This function is executed by the tracking thread (through StartTracking() and ThreadStartTracking()). It should not be called directly.
mitk::IGTHardwareException | Throws an exception if there are errors while tracking the tools. |
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continuously polls serial interface for new 3D marker positions and 6D tool positions until StopTracking is called.
Continuously tracks the 3D position of all markers and the 6D position of all tools until StopTracking() is called. This function is executed by the tracking thread (through StartTracking() and ThreadStartTracking()). It should not be called directly.
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reloads the srom file and reinitializes the tool
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list of 6D tools
Definition at line 316 of file mitkNDITrackingDevice.h.
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COM Port Baud Rate.
Definition at line 308 of file mitkNDITrackingDevice.h.
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Number of Data Bits per token.
Definition at line 309 of file mitkNDITrackingDevice.h.
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use TX (text) or BX (binary) (
Definition at line 315 of file mitkNDITrackingDevice.h.
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Device Name.
Definition at line 306 of file mitkNDITrackingDevice.h.
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create and parse NDI protocol strings
Definition at line 321 of file mitkNDITrackingDevice.h.
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which tracking volume is currently used (if device supports multiple volumes) (
use hardware handshake for serial port connection
Definition at line 312 of file mitkNDITrackingDevice.h.
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update rate of IR illuminator for Polaris
Definition at line 314 of file mitkNDITrackingDevice.h.
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container for markers (3D point tracking mode)
Definition at line 326 of file mitkNDITrackingDevice.h.
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mutex for marker point data container
Definition at line 325 of file mitkNDITrackingDevice.h.
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tracking mode (6D tool tracking, 3D marker tracking,...)
Definition at line 324 of file mitkNDITrackingDevice.h.
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Parity mode for communication.
Definition at line 310 of file mitkNDITrackingDevice.h.
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COM Port Number.
Definition at line 307 of file mitkNDITrackingDevice.h.
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serial communication interface
Definition at line 319 of file mitkNDITrackingDevice.h.
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mutex for coordinated access of serial communication interface
Definition at line 320 of file mitkNDITrackingDevice.h.
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number of stop bits per token
Definition at line 311 of file mitkNDITrackingDevice.h.
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ID of tracking thread.
Definition at line 323 of file mitkNDITrackingDevice.h.
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mutex for coordinated access of tool container
Definition at line 318 of file mitkNDITrackingDevice.h.