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Medical Imaging Interaction Toolkit
2016.11.0
Medical Imaging Interaction Toolkit
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Medical Imaging Interaction Toolkit
2016.11.0
Medical Imaging Interaction Toolkit
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reader and writer for xml representations of mitk::TubeGraph More...
#include <mitkTubeGraphIO.h>
Public Member Functions | |
| TubeGraphIO () | |
| virtual std::vector< BaseData::Pointer > | Read () override |
| Reads a path or stream and creates a list of BaseData objects. More... | |
| virtual ConfidenceLevel | GetReaderConfidenceLevel () const override |
| virtual void | Write () override |
| Write the base data to the specified location or output stream. More... | |
| virtual ConfidenceLevel | GetWriterConfidenceLevel () const override |
 Public Member Functions inherited from mitk::AbstractFileIO | |
| Options | GetReaderOptions () const |
| us::Any | GetReaderOption (const std::string &name) const |
| void | SetReaderOptions (const Options &options) |
| void | SetReaderOption (const std::string &name, const us::Any &value) |
| Options | GetWriterOptions () const |
| us::Any | GetWriterOption (const std::string &name) const |
| void | SetWriterOptions (const Options &options) |
| void | SetWriterOption (const std::string &name, const us::Any &value) |
| std::pair< us::ServiceRegistration< IFileReader >, us::ServiceRegistration< IFileWriter > > | RegisterService (us::ModuleContext *context=us::GetModuleContext()) |
| Public Member Functions inherited from mitk::AbstractFileIOReader | |
| virtual ConfidenceLevel | GetConfidenceLevel () const override |
| The confidence level of the reader or writer implementation. More... | |
| Public Member Functions inherited from mitk::AbstractFileReader | |
| virtual void | SetInput (const std::string &location) override |
| Set the input location. More... | |
| virtual void | SetInput (const std::string &location, std::istream *is) override |
| Set an input stream to read from. More... | |
| virtual std::string | GetInputLocation () const override |
| Get the current input location. More... | |
| virtual std::istream * | GetInputStream () const override |
| Get the input stream. More... | |
| MimeType | GetRegisteredMimeType () const |
| virtual DataStorage::SetOfObjects::Pointer | Read (mitk::DataStorage &ds) override |
| Reads the specified file or input stream, loading its contents into the provided DataStorage. More... | |
| virtual Options | GetOptions () const override |
| returns a list of the supported options More... | |
| virtual us::Any | GetOption (const std::string &name) const override |
| virtual void | SetOptions (const Options &options) override |
| virtual void | SetOption (const std::string &name, const us::Any &value) override |
| virtual void | AddProgressCallback (const ProgressCallback &callback) override |
| virtual void | RemoveProgressCallback (const ProgressCallback &callback) override |
| us::ServiceRegistration< IFileReader > | RegisterService (us::ModuleContext *context=us::GetModuleContext()) |
| void | UnregisterService () |
| Public Member Functions inherited from mitk::IFileReader | |
| virtual | ~IFileReader () |
| Public Member Functions inherited from mitk::IFileIO | |
| virtual | ~IFileIO () |
| Public Member Functions inherited from mitk::AbstractFileIOWriter | |
| virtual ConfidenceLevel | GetConfidenceLevel () const override |
| The confidence level of the reader or writer implementation. More... | |
| Public Member Functions inherited from mitk::AbstractFileWriter | |
| virtual void | SetInput (const BaseData *data) override |
| Set the input data for writing. More... | |
| virtual const BaseData * | GetInput () const override |
| Get the input data set via SetInput(). More... | |
| virtual void | SetOutputLocation (const std::string &location) override |
| Set the output location. More... | |
| virtual std::string | GetOutputLocation () const override |
| Get the current output location. More... | |
| virtual void | SetOutputStream (const std::string &location, std::ostream *os) override |
| Set an output stream for writing. More... | |
| virtual std::ostream * | GetOutputStream () const override |
| Get the output stream. More... | |
| MimeType | GetRegisteredMimeType () const |
| virtual Options | GetOptions () const override |
| returns a list of the supported options More... | |
| virtual us::Any | GetOption (const std::string &name) const override |
| virtual void | SetOptions (const Options &options) override |
| virtual void | SetOption (const std::string &name, const us::Any &value) override |
| virtual void | AddProgressCallback (const ProgressCallback &callback) override |
| virtual void | RemoveProgressCallback (const ProgressCallback &callback) override |
| us::ServiceRegistration< IFileWriter > | RegisterService (us::ModuleContext *context=us::GetModuleContext()) |
| void | UnregisterService () |
| Public Member Functions inherited from mitk::IFileWriter | |
| virtual | ~IFileWriter () |
Static Public Member Functions | |
| static CustomMimeType | TUBEGRAPH_MIMETYPE () |
| static std::string | TUBEGRAPH_MIMETYPE_NAME () |
| Static Public Member Functions inherited from mitk::IFileIO | |
| static std::string | PROP_DESCRIPTION () |
| Service property name for a description. More... | |
| static std::string | PROP_MIMETYPE () |
| Service property name for the mime-type associated with this file writer. More... | |
| Static Public Member Functions inherited from mitk::IFileWriter | |
| static std::string | PROP_BASEDATA_TYPE () |
| Service property name for the supported mitk::BaseData sub-class. More... | |
Additional Inherited Members | |
| Public Types inherited from mitk::IFileIO | |
| enum | ConfidenceLevel { Unsupported, PartiallySupported, Supported } |
| A confidence level describing the confidence of the reader or writer in handling the given data. More... | |
| typedef std::map< std::string, us::Any > | Options |
| Options for reading or writing data. More... | |
| typedef mitk::MessageAbstractDelegate1< float > | ProgressCallback |
| Protected Member Functions inherited from mitk::AbstractFileIO | |
| AbstractFileIO (const AbstractFileIO &other) | |
| AbstractFileIO (const std::string &baseDataType) | |
| AbstractFileIO (const std::string &baseDataType, const CustomMimeType &mimeType, const std::string &description) | |
| void | SetMimeType (const CustomMimeType &mimeType) |
| const CustomMimeType * | GetMimeType () const |
| void | SetReaderDescription (const std::string &description) |
| std::string | GetReaderDescription () const |
| void | SetWriterDescription (const std::string &description) |
| std::string | GetWriterDescription () const |
| void | SetDefaultReaderOptions (const Options &defaultOptions) |
| Options | GetDefaultReaderOptions () const |
| void | SetDefaultWriterOptions (const Options &defaultOptions) |
| Options | GetDefaultWriterOptions () const |
| void | SetReaderRanking (int ranking) |
| Set the service ranking for this file reader. More... | |
| int | GetReaderRanking () const |
| void | SetWriterRanking (int ranking) |
| int | GetWriterRanking () const |
| Protected Member Functions inherited from mitk::AbstractFileIOReader | |
| AbstractFileIOReader () | |
| AbstractFileIOReader (const CustomMimeType &mimeType, const std::string &description) | |
| Protected Member Functions inherited from mitk::AbstractFileReader | |
| AbstractFileReader () | |
| ~AbstractFileReader () | |
| AbstractFileReader (const AbstractFileReader &other) | |
| AbstractFileReader (const CustomMimeType &mimeType, const std::string &description) | |
| virtual us::ServiceProperties | GetServiceProperties () const |
| virtual us::ServiceRegistration< CustomMimeType > | RegisterMimeType (us::ModuleContext *context) |
| void | SetMimeType (const CustomMimeType &mimeType) |
| const CustomMimeType * | GetMimeType () const |
| void | SetMimeTypePrefix (const std::string &prefix) |
| std::string | GetMimeTypePrefix () const |
| void | SetDescription (const std::string &description) |
| std::string | GetDescription () const |
| void | SetDefaultOptions (const Options &defaultOptions) |
| Options | GetDefaultOptions () const |
| void | SetRanking (int ranking) |
| Set the service ranking for this file reader. More... | |
| int | GetRanking () const |
| std::string | GetLocalFileName () const |
| Get a local file name for reading. More... | |
| virtual void | SetDefaultDataNodeProperties (DataNode *node, const std::string &filePath) |
| Protected Member Functions inherited from mitk::AbstractFileIOWriter | |
| AbstractFileIOWriter (const std::string &baseDataType) | |
| AbstractFileIOWriter (const std::string &baseDataType, const CustomMimeType &mimeType, const std::string &description) | |
| Protected Member Functions inherited from mitk::AbstractFileWriter | |
| ~AbstractFileWriter () | |
| AbstractFileWriter (const AbstractFileWriter &other) | |
| AbstractFileWriter (const std::string &baseDataType) | |
| AbstractFileWriter (const std::string &baseDataType, const CustomMimeType &mimeType, const std::string &description) | |
| virtual us::ServiceProperties | GetServiceProperties () const |
| virtual us::ServiceRegistration< CustomMimeType > | RegisterMimeType (us::ModuleContext *context) |
| void | SetMimeType (const CustomMimeType &mimeType) |
| const CustomMimeType * | GetMimeType () const |
| void | SetMimeTypePrefix (const std::string &prefix) |
| std::string | GetMimeTypePrefix () const |
| void | SetDescription (const std::string &description) |
| Sets a human readable description of this writer. More... | |
| std::string | GetDescription () const |
| void | SetDefaultOptions (const Options &defaultOptions) |
| Options | GetDefaultOptions () const |
| void | SetRanking (int ranking) |
| Set the service ranking for this file writer. More... | |
| int | GetRanking () const |
| void | SetBaseDataType (const std::string &baseDataType) |
| Sets the name of the mitk::Basedata that this writer is able to handle. More... | |
| virtual std::string | GetBaseDataType () const |
| void | ValidateOutputLocation () const |
reader and writer for xml representations of mitk::TubeGraph
Definition at line 35 of file mitkTubeGraphIO.h.
| mitk::TubeGraphIO::TubeGraphIO | ( | ) |
Definition at line 34 of file mitkTubeGraphIO.cpp.
References mitk::AbstractFileIO::RegisterService().
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overridevirtual |
Reimplemented from mitk::AbstractFileIO.
Definition at line 354 of file mitkTubeGraphIO.cpp.
References mitk::AbstractFileIO::GetReaderConfidenceLevel(), mitk::IFileIO::Supported, and mitk::IFileIO::Unsupported.
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overridevirtual |
Reimplemented from mitk::AbstractFileIO.
Definition at line 556 of file mitkTubeGraphIO.cpp.
References mitk::AbstractFileIO::GetWriterConfidenceLevel(), mitk::IFileIO::Supported, and mitk::IFileIO::Unsupported.
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overridevirtual |
Reads a path or stream and creates a list of BaseData objects.
This method must be implemented for each specific reader. Call GetInputStream() first and check for a non-null stream to read from. If the input stream is NULL, use GetInputLocation() to read from a local file-system path.
If the reader cannot use streams directly, use GetLocalFileName() instead.
| mitk::Exception |
Implements mitk::AbstractFileReader.
Definition at line 41 of file mitkTubeGraphIO.cpp.
References mitk::TubeGraphEdge::AddTubeElement(), mitk::TubeGraphProperty::Annotation::description, mitk::TubeGraph::ErrorId, mitk::TubeGraphProperty::LabelGroup::Label::isVisible, mitk::TubeGraphProperty::LabelGroup::Label::labelColor, mitk::TubeGraphProperty::LabelGroup::labelGroupName, mitk::TubeGraphProperty::LabelGroup::Label::labelName, mitk::TubeGraphProperty::LabelGroup::labels, MITK_ERROR, MITK_INFO, mitkThrow, mitk::TubeGraphProperty::Annotation::name, mitk::TubeGraphProperty::New(), mitk::New(), mitk::Geometry3D::New(), mitk::TubeGraph::New(), mitk::TubeGraphVertex::SetTubeElement(), mitk::TubeGraphProperty::Annotation::tube, mitk::TubeGraphDefinitions::XML_ANNOTATION_DESCRIPTION, mitk::TubeGraphDefinitions::XML_ANNOTATION_NAME, mitk::TubeGraphDefinitions::XML_ANNOTATIONS, mitk::TubeGraphDefinitions::XML_ATTRIBUTIONS, mitk::TubeGraphDefinitions::XML_EDGE_ID, mitk::TubeGraphDefinitions::XML_EDGE_SOURCE_ID, mitk::TubeGraphDefinitions::XML_EDGE_TARGET_ID, mitk::TubeGraphDefinitions::XML_EDGES, mitk::TubeGraphDefinitions::XML_ELEMENT, mitk::TubeGraphDefinitions::XML_ELEMENT_DIAMETER, mitk::TubeGraphDefinitions::XML_ELEMENT_X, mitk::TubeGraphDefinitions::XML_ELEMENT_Y, mitk::TubeGraphDefinitions::XML_ELEMENT_Z, mitk::TubeGraphDefinitions::XML_GEOMETRY, mitk::TubeGraphDefinitions::XML_LABEL, mitk::TubeGraphDefinitions::XML_LABEL_COLOR_B, mitk::TubeGraphDefinitions::XML_LABEL_COLOR_G, mitk::TubeGraphDefinitions::XML_LABEL_COLOR_R, mitk::TubeGraphDefinitions::XML_LABEL_NAME, mitk::TubeGraphDefinitions::XML_LABEL_VISIBILITY, mitk::TubeGraphDefinitions::XML_LABELGROUP_NAME, mitk::TubeGraphDefinitions::XML_LABELGROUPS, mitk::TubeGraphDefinitions::XML_MATRIX_XX, mitk::TubeGraphDefinitions::XML_MATRIX_XY, mitk::TubeGraphDefinitions::XML_MATRIX_XZ, mitk::TubeGraphDefinitions::XML_MATRIX_YX, mitk::TubeGraphDefinitions::XML_MATRIX_YY, mitk::TubeGraphDefinitions::XML_MATRIX_YZ, mitk::TubeGraphDefinitions::XML_MATRIX_ZX, mitk::TubeGraphDefinitions::XML_MATRIX_ZY, mitk::TubeGraphDefinitions::XML_MATRIX_ZZ, mitk::TubeGraphDefinitions::XML_ORIGIN_X, mitk::TubeGraphDefinitions::XML_ORIGIN_Y, mitk::TubeGraphDefinitions::XML_ORIGIN_Z, mitk::TubeGraphDefinitions::XML_SPACING_X, mitk::TubeGraphDefinitions::XML_SPACING_Y, mitk::TubeGraphDefinitions::XML_SPACING_Z, mitk::TubeGraphDefinitions::XML_TUBE_ID_1, mitk::TubeGraphDefinitions::XML_TUBE_ID_2, mitk::TubeGraphDefinitions::XML_VERTEX_ID, and mitk::TubeGraphDefinitions::XML_VERTICES.
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inlinestatic |
Definition at line 52 of file mitkTubeGraphIO.h.
References mitk::CustomMimeType::AddExtension(), mitk::CustomMimeType::SetCategory(), mitk::CustomMimeType::SetComment(), and TUBEGRAPH_MIMETYPE_NAME().
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inlinestatic |
Definition at line 60 of file mitkTubeGraphIO.h.
References mitk::IOMimeTypes::DEFAULT_BASE_NAME().
Referenced by TUBEGRAPH_MIMETYPE().
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overridevirtual |
Write the base data to the specified location or output stream.
This method must be implemented for each specific writer. Call GetOutputStream() first and check for a non-null stream to write to. If the output stream is NULL, use GetOutputLocation() to write to a local file-system path.
If the reader cannot use streams directly, use GetLocalFile() to retrieve a temporary local file name instead.
| mitk::Exception |
Implements mitk::AbstractFileWriter.
Definition at line 361 of file mitkTubeGraphIO.cpp.
References mitk::TubeElement::GetCoordinates(), mitk::UndirectedGraph< TVertex, TEdge >::GetEdgeDescriptor(), mitk::BaseData::GetGeometry(), mitk::AbstractFileWriter::GetInput(), mitk::BaseData::GetProperty(), mitk::UndirectedGraph< TVertex, TEdge >::GetVectorOfAllEdges(), mitk::UndirectedGraph< TVertex, TEdge >::GetVectorOfAllVertices(), mitk::UndirectedGraph< TVertex, TEdge >::GetVertexDescriptor(), mitk::UndirectedGraph< TVertex, TEdge >::GetVerticesOfAnEdge(), mitkThrow, mitk::TubeGraphDefinitions::VERSION_STRING, mitk::TubeGraphDefinitions::XML_ANNOTATION, mitk::TubeGraphDefinitions::XML_ANNOTATION_DESCRIPTION, mitk::TubeGraphDefinitions::XML_ANNOTATION_NAME, mitk::TubeGraphDefinitions::XML_ANNOTATIONS, mitk::TubeGraphDefinitions::XML_ATTRIBUTION, mitk::TubeGraphDefinitions::XML_ATTRIBUTIONS, mitk::TubeGraphDefinitions::XML_EDGE, mitk::TubeGraphDefinitions::XML_EDGE_ID, mitk::TubeGraphDefinitions::XML_EDGE_SOURCE_ID, mitk::TubeGraphDefinitions::XML_EDGE_TARGET_ID, mitk::TubeGraphDefinitions::XML_EDGES, mitk::TubeGraphDefinitions::XML_ELEMENT, mitk::TubeGraphDefinitions::XML_ELEMENT_DIAMETER, mitk::TubeGraphDefinitions::XML_ELEMENT_X, mitk::TubeGraphDefinitions::XML_ELEMENT_Y, mitk::TubeGraphDefinitions::XML_ELEMENT_Z, mitk::TubeGraphDefinitions::XML_FILE_VERSION, mitk::TubeGraphDefinitions::XML_GEOMETRY, mitk::TubeGraphDefinitions::XML_LABEL, mitk::TubeGraphDefinitions::XML_LABEL_COLOR_B, mitk::TubeGraphDefinitions::XML_LABEL_COLOR_G, mitk::TubeGraphDefinitions::XML_LABEL_COLOR_R, mitk::TubeGraphDefinitions::XML_LABEL_NAME, mitk::TubeGraphDefinitions::XML_LABEL_VISIBILITY, mitk::TubeGraphDefinitions::XML_LABELGROUP, mitk::TubeGraphDefinitions::XML_LABELGROUP_NAME, mitk::TubeGraphDefinitions::XML_LABELGROUPS, mitk::TubeGraphDefinitions::XML_MATRIX_XX, mitk::TubeGraphDefinitions::XML_MATRIX_XY, mitk::TubeGraphDefinitions::XML_MATRIX_XZ, mitk::TubeGraphDefinitions::XML_MATRIX_YX, mitk::TubeGraphDefinitions::XML_MATRIX_YY, mitk::TubeGraphDefinitions::XML_MATRIX_YZ, mitk::TubeGraphDefinitions::XML_MATRIX_ZX, mitk::TubeGraphDefinitions::XML_MATRIX_ZY, mitk::TubeGraphDefinitions::XML_MATRIX_ZZ, mitk::TubeGraphDefinitions::XML_ORIGIN_X, mitk::TubeGraphDefinitions::XML_ORIGIN_Y, mitk::TubeGraphDefinitions::XML_ORIGIN_Z, mitk::TubeGraphDefinitions::XML_SPACING_X, mitk::TubeGraphDefinitions::XML_SPACING_Y, mitk::TubeGraphDefinitions::XML_SPACING_Z, mitk::TubeGraphDefinitions::XML_TUBE_ID_1, mitk::TubeGraphDefinitions::XML_TUBE_ID_2, mitk::TubeGraphDefinitions::XML_TUBEGRAPH_FILE, mitk::TubeGraphDefinitions::XML_VERTEX, mitk::TubeGraphDefinitions::XML_VERTEX_ID, and mitk::TubeGraphDefinitions::XML_VERTICES.
1.8.9.1 
