A class to calculate and store the shortest path between each pair of nodes. More...

#include <mitkConnectomicsShortestPathHistogram.h>

Inheritance diagram for mitk::ConnectomicsShortestPathHistogram:

Collaboration diagram for mitk::ConnectomicsShortestPathHistogram:

Public Types
enum	ShortestPathCalculationMode { UnweightedUndirectedMode, WeightedUndirectedMode }

Public Member Functions
	ConnectomicsShortestPathHistogram ()

virtual	~ConnectomicsShortestPathHistogram ()

void	SetShortestPathCalculationMode (const ShortestPathCalculationMode &)

ShortestPathCalculationMode	GetShortestPathCalculationMode ()

double	GetEfficiency ()

Public Member Functions inherited from mitk::ConnectomicsHistogramBase
	ConnectomicsHistogramBase ()

virtual	~ConnectomicsHistogramBase ()

virtual double	GetYMin () const
	Returns the minimal y=f(x) value of the histogram. More...

virtual double	GetYMax () const
	Returns the maximum y=f(x) value of the histogram. More...

virtual double	GetXMin () const
	Returns the minimal x value of the histogram. More...

virtual double	GetXMax () const
	Returns the maximum x value of the histogram. More...

virtual int	GetRange () const
	Returns the range of the histogram. More...

virtual void	UpdateYMax ()
	Update the Y maximum to the maximal value in the histogram. More...

virtual void	ComputeFromBaseData (BaseData *source) override
	Creates a new histogram from the source. More...

virtual void	PrintToConsole () const
	Print values to console. More...

virtual bool	IsValid () const
	Returns whether the histogram can be considered valid. More...

virtual std::string	GetSubject () const
	Returns the subject of the histogram as a string. More...

virtual void	SetSubject (std::string)
	Set the subject of the histogram as a string. More...

virtual float	GetRelativeBin (double start, double end) const override
	Get bin height for the bin between start and end. More...

virtual std::vector< double >	GetHistogramVector ()
	Get the double vector. More...

Protected Types
typedef mitk::ConnectomicsNetwork::NetworkType	NetworkType

typedef boost::graph_traits< NetworkType >::vertex_descriptor	DescriptorType

typedef boost::graph_traits< NetworkType >::vertex_iterator	IteratorType

Protected Member Functions
virtual void	ComputeFromConnectomicsNetwork (ConnectomicsNetwork *source) override
	Creates a new histogram from the network source. More...

void	CalculateUnweightedUndirectedShortestPaths (NetworkType *boostGraph)

void	CalculateWeightedUndirectedShortestPaths (NetworkType *boostGraph)

void	ConvertDistanceMapToHistogram ()

Protected Member Functions inherited from mitk::ConnectomicsHistogramBase
virtual double	GetMin () const override
	Legacy method, do no use. More...

virtual double	GetMax () const override
	Legacy method, do no use. More...

Protected Attributes
ShortestPathCalculationMode	m_Mode

std::vector< std::vector< int > >	m_DistanceMatrix

bool	m_EverythingConnected

Protected Attributes inherited from mitk::ConnectomicsHistogramBase
bool	m_Valid
	Is this a valid histogram. More...

int	m_BaselineValue
	Which is the baseline value for the histogram This value should be zero for all network histograms. More...

int	m_TopValue
	Which is the top value for the histogram. More...

int	m_StartValue
	Which is the starting x value for the histogram. More...

std::vector< double >	m_HistogramVector
	We expect not continuous but discrete histograms. More...

std::string	m_Subject
	Subject of the histogram as a string. More...