Medical Imaging Interaction Toolkit
2016.11.0
Medical Imaging Interaction Toolkit
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The reader for connectomics network files (.cnf) More...
#include <mitkConnectomicsNetworkReader.h>
Public Types | |
typedef mitk::ConnectomicsNetwork | OutputType |
Public Types inherited from mitk::IFileIO | |
enum | ConfidenceLevel { Unsupported, PartiallySupported, Supported } |
A confidence level describing the confidence of the reader or writer in handling the given data. More... | |
typedef std::map< std::string, us::Any > | Options |
Options for reading or writing data. More... | |
typedef mitk::MessageAbstractDelegate1< float > | ProgressCallback |
Public Member Functions | |
ConnectomicsNetworkReader (const ConnectomicsNetworkReader &other) | |
ConnectomicsNetworkReader () | |
virtual | ~ConnectomicsNetworkReader () |
virtual std::vector< itk::SmartPointer< BaseData > > | Read () override |
Reads a path or stream and creates a list of BaseData objects. More... | |
Public Member Functions inherited from mitk::AbstractFileReader | |
virtual void | SetInput (const std::string &location) override |
Set the input location. More... | |
virtual void | SetInput (const std::string &location, std::istream *is) override |
Set an input stream to read from. More... | |
virtual std::string | GetInputLocation () const override |
Get the current input location. More... | |
virtual std::istream * | GetInputStream () const override |
Get the input stream. More... | |
MimeType | GetRegisteredMimeType () const |
virtual DataStorage::SetOfObjects::Pointer | Read (mitk::DataStorage &ds) override |
Reads the specified file or input stream, loading its contents into the provided DataStorage. More... | |
virtual ConfidenceLevel | GetConfidenceLevel () const override |
The confidence level of the reader or writer implementation. More... | |
virtual Options | GetOptions () const override |
returns a list of the supported options More... | |
virtual us::Any | GetOption (const std::string &name) const override |
virtual void | SetOptions (const Options &options) override |
virtual void | SetOption (const std::string &name, const us::Any &value) override |
virtual void | AddProgressCallback (const ProgressCallback &callback) override |
virtual void | RemoveProgressCallback (const ProgressCallback &callback) override |
us::ServiceRegistration< IFileReader > | RegisterService (us::ModuleContext *context=us::GetModuleContext()) |
void | UnregisterService () |
Public Member Functions inherited from mitk::IFileReader | |
virtual | ~IFileReader () |
Public Member Functions inherited from mitk::IFileIO | |
virtual | ~IFileIO () |
Additional Inherited Members | |
Static Public Member Functions inherited from mitk::IFileIO | |
static std::string | PROP_DESCRIPTION () |
Service property name for a description. More... | |
static std::string | PROP_MIMETYPE () |
Service property name for the mime-type associated with this file writer. More... | |
Protected Member Functions inherited from mitk::AbstractFileReader | |
AbstractFileReader () | |
~AbstractFileReader () | |
AbstractFileReader (const AbstractFileReader &other) | |
AbstractFileReader (const CustomMimeType &mimeType, const std::string &description) | |
virtual us::ServiceProperties | GetServiceProperties () const |
virtual us::ServiceRegistration< CustomMimeType > | RegisterMimeType (us::ModuleContext *context) |
void | SetMimeType (const CustomMimeType &mimeType) |
const CustomMimeType * | GetMimeType () const |
void | SetMimeTypePrefix (const std::string &prefix) |
std::string | GetMimeTypePrefix () const |
void | SetDescription (const std::string &description) |
std::string | GetDescription () const |
void | SetDefaultOptions (const Options &defaultOptions) |
Options | GetDefaultOptions () const |
void | SetRanking (int ranking) |
Set the service ranking for this file reader. More... | |
int | GetRanking () const |
std::string | GetLocalFileName () const |
Get a local file name for reading. More... | |
virtual void | SetDefaultDataNodeProperties (DataNode *node, const std::string &filePath) |
The reader for connectomics network files (.cnf)
Definition at line 32 of file mitkConnectomicsNetworkReader.h.
Definition at line 36 of file mitkConnectomicsNetworkReader.h.
mitk::ConnectomicsNetworkReader::ConnectomicsNetworkReader | ( | const ConnectomicsNetworkReader & | other | ) |
Definition at line 29 of file mitkConnectomicsNetworkReader.cpp.
mitk::ConnectomicsNetworkReader::ConnectomicsNetworkReader | ( | ) |
Definition at line 34 of file mitkConnectomicsNetworkReader.cpp.
References mitk::AbstractFileReader::RegisterService().
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virtual |
Definition at line 40 of file mitkConnectomicsNetworkReader.cpp.
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overridevirtual |
Reads a path or stream and creates a list of BaseData objects.
This method must be implemented for each specific reader. Call GetInputStream() first and check for a non-null stream to read from. If the input stream is NULL
, use GetInputLocation() to read from a local file-system path.
If the reader cannot use streams directly, use GetLocalFileName() instead.
mitk::Exception |
Implements mitk::AbstractFileReader.
Definition at line 44 of file mitkConnectomicsNetworkReader.cpp.
References mitk::AbstractFileReader::GetInputLocation(), MITK_ERROR, MITK_INFO, mitkThrow, mitk::Geometry3D::New(), mitk::New(), mitk::ConnectomicsNetwork::New(), mitk::ConnectomicsNetworkDefinitions::XML_EDGE_DOUBLE_WEIGHT_ID, mitk::ConnectomicsNetworkDefinitions::XML_EDGE_ID, mitk::ConnectomicsNetworkDefinitions::XML_EDGE_SOURCE_ID, mitk::ConnectomicsNetworkDefinitions::XML_EDGE_TARGET_ID, mitk::ConnectomicsNetworkDefinitions::XML_EDGE_WEIGHT_ID, mitk::ConnectomicsNetworkDefinitions::XML_EDGES, mitk::ConnectomicsNetworkDefinitions::XML_FILE_VERSION, mitk::ConnectomicsNetworkDefinitions::XML_GEOMETRY, mitk::ConnectomicsNetworkDefinitions::XML_MATRIX_XX, mitk::ConnectomicsNetworkDefinitions::XML_MATRIX_XY, mitk::ConnectomicsNetworkDefinitions::XML_MATRIX_XZ, mitk::ConnectomicsNetworkDefinitions::XML_MATRIX_YX, mitk::ConnectomicsNetworkDefinitions::XML_MATRIX_YY, mitk::ConnectomicsNetworkDefinitions::XML_MATRIX_YZ, mitk::ConnectomicsNetworkDefinitions::XML_MATRIX_ZX, mitk::ConnectomicsNetworkDefinitions::XML_MATRIX_ZY, mitk::ConnectomicsNetworkDefinitions::XML_MATRIX_ZZ, mitk::ConnectomicsNetworkDefinitions::XML_ORIGIN_X, mitk::ConnectomicsNetworkDefinitions::XML_ORIGIN_Y, mitk::ConnectomicsNetworkDefinitions::XML_ORIGIN_Z, mitk::ConnectomicsNetworkDefinitions::XML_SPACING_X, mitk::ConnectomicsNetworkDefinitions::XML_SPACING_Y, mitk::ConnectomicsNetworkDefinitions::XML_SPACING_Z, mitk::ConnectomicsNetworkDefinitions::XML_VERTEX_ID, mitk::ConnectomicsNetworkDefinitions::XML_VERTEX_LABEL, mitk::ConnectomicsNetworkDefinitions::XML_VERTEX_X, mitk::ConnectomicsNetworkDefinitions::XML_VERTEX_Y, mitk::ConnectomicsNetworkDefinitions::XML_VERTEX_Z, and mitk::ConnectomicsNetworkDefinitions::XML_VERTICES.