Medical Imaging Interaction Toolkit
2016.11.0
Medical Imaging Interaction Toolkit
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Sorting and grouping like mitk::DicomSeriesReader until 2013. More...
#include <mitkClassicDICOMSeriesReader.h>
Public Member Functions | |
mitkClassMacro (ClassicDICOMSeriesReader, DICOMITKSeriesGDCMReader) | |
mitkCloneMacro (ClassicDICOMSeriesReader) | |
virtual bool | operator== (const DICOMFileReader &other) const override |
Public Member Functions inherited from mitk::ThreeDnTDICOMSeriesReader | |
mitkClassMacro (ThreeDnTDICOMSeriesReader, DICOMITKSeriesGDCMReader) | |
mitkCloneMacro (ThreeDnTDICOMSeriesReader) | |
mitkNewMacro1Param (ThreeDnTDICOMSeriesReader, unsigned int) | |
void | SetGroup3DandT (bool on) |
Control whether 3D+t grouping shall actually be attempted. More... | |
bool | GetGroup3DandT () const |
virtual bool | LoadImages () override |
Load via multiple calls to itk::ImageSeriesReader. More... | |
Public Member Functions inherited from mitk::DICOMITKSeriesGDCMReader | |
mitkClassMacro (DICOMITKSeriesGDCMReader, DICOMFileReader) | |
mitkCloneMacro (DICOMITKSeriesGDCMReader) | |
mitkNewMacro1Param (DICOMITKSeriesGDCMReader, unsigned int) | |
virtual void | AnalyzeInputFiles () override |
Runs the sorting / splitting process described in Loading strategy. Method required by DICOMFileReader. More... | |
virtual bool | CanHandleFile (const std::string &filename) override |
Indicate whether this reader can handle given file. More... | |
virtual void | AddSortingElement (DICOMDatasetSorter *sorter, bool atFront=false) |
Add an element to the sorting procedure described in Loading strategy. More... | |
ConstSorterList | GetFreelyConfiguredSortingElements () const |
void | SetFixTiltByShearing (bool on) |
Controls whether to "fix" tilted acquisitions by shearing the output (see Gantry tilt handling). More... | |
bool | GetFixTiltByShearing () const |
void | SetAcceptTwoSlicesGroups (bool accept) const |
Controls whether groups of only two images are accepted when ensuring consecutive slices via EquiDistantBlocksSorter. More... | |
bool | GetAcceptTwoSlicesGroups () const |
void | SetToleratedOriginOffsetToAdaptive (double fractionOfInterSliceDistanct=0.3) const |
See Forced Configuration. More... | |
void | SetToleratedOriginOffset (double millimeters=0.005) const |
See Forced Configuration. More... | |
double | GetToleratedOriginError () const |
bool | IsToleratedOriginOffsetAbsolute () const |
double | GetDecimalPlacesForOrientation () const |
virtual DICOMTagPathList | GetTagsOfInterest () const override |
Public Member Functions inherited from mitk::DICOMFileReader | |
mitkClassMacroItkParent (DICOMFileReader, itk::Object) | |
void | SetInputFiles (const StringList &filenames) |
This input files. More... | |
const StringList & | GetInputFiles () const |
This input files. More... | |
unsigned int | GetNumberOfOutputs () const |
Number of outputs, only meaningful after calling AnalyzeInputFiles() More... | |
const DICOMImageBlockDescriptor & | GetOutput (unsigned int index) const |
Individual outputs, only meaningful after calling AnalyzeInputFiles(). More... | |
void | SetConfigurationLabel (const std::string &) |
Short label/name to describe this reader. More... | |
std::string | GetConfigurationLabel () const |
Short label/name to describe this reader. More... | |
void | SetConfigurationDescription (const std::string &) |
One-sentence description of the reader's loading "strategy". More... | |
std::string | GetConfigurationDescription () const |
One-sentence description of the reader's loading "strategy". More... | |
void | PrintConfiguration (std::ostream &os) const |
Print configuration description to given stream, for human reader. More... | |
void | PrintOutputs (std::ostream &os, bool filenameDetails=false) const |
Print output description to given stream, for human reader. More... | |
virtual void | SetAdditionalTagsOfInterest (const AdditionalTagsMapType &tagList) |
Set a list of DICOMTagPaths that specifiy all DICOM-Tags that will be copied into the property of the mitk::Image. More... | |
virtual void | SetTagLookupTableToPropertyFunctor (mitk::DICOMImageBlockDescriptor::TagLookupTableToPropertyFunctor functor) |
Set a functor that defines how the slice-specific tag-values are stored in a Property. More... | |
Static Public Member Functions | |
static Pointer | New () |
Static Public Member Functions inherited from mitk::ThreeDnTDICOMSeriesReader | |
static Pointer | New () |
Static Public Member Functions inherited from mitk::DICOMITKSeriesGDCMReader | |
static Pointer | New () |
Static Public Member Functions inherited from mitk::DICOMFileReader | |
static bool | IsDICOM (const std::string &filename) |
Test whether a file is DICOM at all. More... | |
Protected Member Functions | |
ClassicDICOMSeriesReader () | |
virtual | ~ClassicDICOMSeriesReader () |
ClassicDICOMSeriesReader (const ClassicDICOMSeriesReader &other) | |
ClassicDICOMSeriesReader & | operator= (const ClassicDICOMSeriesReader &other) |
Protected Member Functions inherited from mitk::ThreeDnTDICOMSeriesReader | |
ThreeDnTDICOMSeriesReader (unsigned int decimalPlacesForOrientation=5) | |
virtual | ~ThreeDnTDICOMSeriesReader () |
ThreeDnTDICOMSeriesReader (const ThreeDnTDICOMSeriesReader &other) | |
ThreeDnTDICOMSeriesReader & | operator= (const ThreeDnTDICOMSeriesReader &other) |
virtual SortingBlockList | Condense3DBlocks (SortingBlockList &) override |
Analyze the groups produced by DICOMITKSeriesGDCMReader for 3D+t properties. This method tests whether some blocks are at the same spatial position and groups them into single blocks. More... | |
bool | LoadMitkImageForImageBlockDescriptor (DICOMImageBlockDescriptor &block) const override |
Protected Member Functions inherited from mitk::DICOMITKSeriesGDCMReader | |
virtual void | InternalPrintConfiguration (std::ostream &os) const override |
Configuration description for human reader, to be implemented by sub-classes. More... | |
void | PushLocale () const |
Remember current locale on stack, activate "C" locale. "C" locale is required for correct parsing of numbers by itk::ImageSeriesReader. More... | |
void | PopLocale () const |
Activate last remembered locale from locale stack "C" locale is required for correct parsing of numbers by itk::ImageSeriesReader. More... | |
DICOMITKSeriesGDCMReader (unsigned int decimalPlacesForOrientation=5) | |
virtual | ~DICOMITKSeriesGDCMReader () |
DICOMITKSeriesGDCMReader (const DICOMITKSeriesGDCMReader &other) | |
DICOMITKSeriesGDCMReader & | operator= (const DICOMITKSeriesGDCMReader &other) |
virtual DICOMTagCache::Pointer | GetTagCache () const |
void | SetTagCache (const DICOMTagCache::Pointer &) override |
A way to provide external knowledge about files and tag values is appreciated. More... | |
virtual bool | LoadMitkImageForOutput (unsigned int o) |
Loads the mitk::Image by means of an itk::ImageSeriesReader. More... | |
Protected Member Functions inherited from mitk::DICOMFileReader | |
DICOMFileReader () | |
virtual | ~DICOMFileReader () |
DICOMFileReader (const DICOMFileReader &other) | |
DICOMFileReader & | operator= (const DICOMFileReader &other) |
void | ClearOutputs () |
void | SetNumberOfOutputs (unsigned int numberOfOutputs) |
void | SetOutput (unsigned int index, const DICOMImageBlockDescriptor &output) |
DICOMImageBlockDescriptor & | InternalGetOutput (unsigned int index) |
non-const access to the DICOMImageBlockDescriptor More... | |
virtual AdditionalTagsMapType | GetAdditionalTagsOfInterest () const |
mitk::DICOMImageBlockDescriptor::TagLookupTableToPropertyFunctor | GetTagLookupTableToPropertyFunctor () const |
Additional Inherited Members | |
Public Types inherited from mitk::DICOMITKSeriesGDCMReader | |
typedef const std::list< DICOMDatasetSorter::ConstPointer > | ConstSorterList |
Public Types inherited from mitk::DICOMFileReader | |
typedef DICOMImageBlockDescriptor::AdditionalTagsMapType | AdditionalTagsMapType |
Protected Types inherited from mitk::DICOMITKSeriesGDCMReader | |
typedef std::vector< DICOMDatasetAccessingImageFrameList > | SortingBlockList |
Static Protected Member Functions inherited from mitk::DICOMITKSeriesGDCMReader | |
static std::string | GetActiveLocale () |
Return active C locale. More... | |
static SortingBlockList | InternalExecuteSortingStep (unsigned int sortingStepIndex, const DICOMDatasetSorter::Pointer &sorter, const SortingBlockList &input) |
Sorting step as described in Loading strategy. More... | |
static ReaderImplementationLevel | GetReaderImplementationLevel (const std::string sopClassUID) |
Describe this reader's confidence for given SOP class UID. More... | |
Protected Attributes inherited from mitk::ThreeDnTDICOMSeriesReader | |
bool | m_Group3DandT |
Protected Attributes inherited from mitk::DICOMITKSeriesGDCMReader | |
bool | m_FixTiltByShearing |
mitk::EquiDistantBlocksSorter::Pointer | m_EquiDistantBlocksSorter |
mitk::NormalDirectionConsistencySorter::Pointer | m_NormalDirectionConsistencySorter |
Sorting and grouping like mitk::DicomSeriesReader until 2013.
This class implements the same functionality as the legacy class DicomSeriesReader, except that is is 75 lines instead of 2500 lines.
The following text documents the actual sorting logic of this reader.
The class groups datasets that have different values in any of the following tags:
Within each of the groups, datasets are sorted by the value of the following tags (primary sorting first):
If the series was acquired using a tilted gantry, this will be "fixed" by applying a shear transformation.
If multiple images occupy the same position in space, it is assumed that this indicated a 3D+t image.
Definition at line 61 of file mitkClassicDICOMSeriesReader.h.
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protected |
Definition at line 25 of file mitkClassicDICOMSeriesReader.cpp.
References mitk::DICOMITKSeriesGDCMReader::AddSortingElement(), mitk::DICOMITKSeriesGDCMReader::m_EquiDistantBlocksSorter, mitk::New(), mitk::DICOMFileReader::SetConfigurationDescription(), mitk::DICOMFileReader::SetConfigurationLabel(), mitk::DICOMITKSeriesGDCMReader::SetFixTiltByShearing(), mitk::ThreeDnTDICOMSeriesReader::SetGroup3DandT(), and mitk::DICOMITKSeriesGDCMReader::SetToleratedOriginOffset().
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protectedvirtual |
Definition at line 69 of file mitkClassicDICOMSeriesReader.cpp.
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protected |
Definition at line 63 of file mitkClassicDICOMSeriesReader.cpp.
mitk::ClassicDICOMSeriesReader::mitkClassMacro | ( | ClassicDICOMSeriesReader | , |
DICOMITKSeriesGDCMReader | |||
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mitk::ClassicDICOMSeriesReader::mitkCloneMacro | ( | ClassicDICOMSeriesReader | ) |
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static |
Referenced by mitk::ClassicDICOMSeriesReaderService::GetReader(), and ReadInDICOMFiles().
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protected |
Definition at line 75 of file mitkClassicDICOMSeriesReader.cpp.
References mitk::ThreeDnTDICOMSeriesReader::operator=().
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overridevirtual |
Reimplemented from mitk::ThreeDnTDICOMSeriesReader.
Definition at line 86 of file mitkClassicDICOMSeriesReader.cpp.