ManualSegmentationEvaluation.cpp File Reference

#include <mitkCoreObjectFactory.h>
#include "mitkImage.h"
#include <boost/lexical_cast.hpp>
#include <vnl/vnl_random.h>
#include "mitkCommandLineParser.h"
#include <mitkIOUtil.h>
#include <itksys/SystemTools.hxx>
#include <mitkITKImageImport.h>
#include <mitkImageCast.h>
#include <mitkProperties.h>
#include <itkImageRegionIterator.h>
#include <mitkCLUtil.h>
#include <mitkVigraRandomForestClassifier.h>
#include <QDir>
#include <QString>
#include <QStringList>
#include <itkLabelOverlapMeasuresImageFilter.h>
#include <itkImageRegionIteratorWithIndex.h>
#include <itkNeighborhoodFunctorImageFilter.h>
#include <itkFirstOrderStatisticsFeatureFunctor.h>
#include <itkNeighborhood.h>
#include <itkHessianMatrixEigenvalueImageFilter.h>
#include <itkStructureTensorEigenvalueImageFilter.h>
#include <itkLineHistogramBasedMassImageFilter.h>

Go to the source code of this file.

Functions
void	ProcessFeatureImages (const mitk::Image::Pointer &raw_image, const mitk::Image::Pointer &brain_mask)
std::vector< mitk::Point3D >	PointSetToVector (const mitk::PointSet::Pointer &mps)
int	main (int argc, char *argv[])

Variables
std::vector< mitk::Image::Pointer >	m_FeatureImageVector

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 175 of file ManualSegmentationEvaluation.cpp.

References mitkCommandLineParser::addArgument(), us::any_cast(), mitk::CastToItkImage(), mitk::CastToMitkImage(), mitk::CLUtil::CountVoxel(), mitkCommandLineParser::InputDirectory, mitkCommandLineParser::InputFile, mitk::IOUtil::Load(), mitk::IOUtil::LoadPointSet(), mitk::ImageMappingHelper::map(), mitk::CLUtil::MergeLabels(), MITK_INFO, mitk::New(), mitkCommandLineParser::OutputDirectory, mitkCommandLineParser::parseArguments(), PointSetToVector(), ProcessFeatureImages(), mitkCommandLineParser::setArgumentPrefix(), mitkCommandLineParser::setCategory(), mitkCommandLineParser::setContributor(), mitkCommandLineParser::setDescription(), and mitkCommandLineParser::setTitle().

std::vector<mitk::Point3D> PointSetToVector

(

const mitk::PointSet::Pointer &

mps

)

Definition at line 167 of file ManualSegmentationEvaluation.cpp.

Referenced by mitk::PointSetStatisticsCalculator::GetPositionErrorMax(), mitk::PointSetStatisticsCalculator::GetPositionErrorMean(), mitk::PointSetStatisticsCalculator::GetPositionErrorMedian(), mitk::PointSetStatisticsCalculator::GetPositionErrorMin(), mitk::PointSetStatisticsCalculator::GetPositionErrorRMS(), mitk::PointSetStatisticsCalculator::GetPositionErrorSampleStandardDeviation(), mitk::PointSetStatisticsCalculator::GetPositionErrorStandardDeviation(), mitk::PointSetStatisticsCalculator::GetPositionMean(), mitk::PointSetStatisticsCalculator::GetPositionSampleStandardDeviation(), mitk::PointSetStatisticsCalculator::GetPositionStandardDeviation(), and main().

void ProcessFeatureImages	(	const mitk::Image::Pointer &	raw_image,
		const mitk::Image::Pointer &	brain_mask
	)

Definition at line 55 of file ManualSegmentationEvaluation.cpp.

References mitk::CastToItkImage(), mitk::CastToMitkImage(), mitk::CLUtil::GaussianFilter(), itk::LineHistogramBasedMassImageFilter< TInputImageType, TOutputImageType, TMaskImageType >::New(), itk::HessianMatrixEigenvalueImageFilter< TInputImageType, TOutputImageType, TMaskImageType >::New(), itk::StructureTensorEigenvalueImageFilter< TInputImageType, TOutputImageType, TMaskImageType >::New(), mitk::New(), mitk::Image::New(), and mitk::CLUtil::ProbabilityMap().

Referenced by main().

Variable Documentation

std::vector<mitk::Image::Pointer> m_FeatureImageVector

Definition at line 53 of file ManualSegmentationEvaluation.cpp.