mitkLevelWindow.cpp

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/*===================================================================

The Medical Imaging Interaction Toolkit (MITK)

Copyright (c) German Cancer Research Center,
Division of Medical and Biological Informatics.
All rights reserved.

This software is distributed WITHOUT ANY WARRANTY; without
even the implied warranty of MERCHANTABILITY or FITNESS FOR
A PARTICULAR PURPOSE.

See LICENSE.txt or http://www.mitk.org for details.

===================================================================*/

#include "mitkLevelWindow.h"
#include "mitkImage.h"
#include "mitkImageSliceSelector.h"
#include "mitkImageStatisticsHolder.h"

#include <algorithm>

void mitk::LevelWindow::EnsureConsistency()
{
  // Check if total range is ok
  {
    if (m_RangeMin > m_RangeMax)
      std::swap(m_RangeMin, m_RangeMax);
    if (m_RangeMin == m_RangeMax)
      m_RangeMin = m_RangeMax - 1;
  }

  // Check if current window is ok
  {
    if (m_LowerWindowBound > m_UpperWindowBound)
      std::swap(m_LowerWindowBound, m_UpperWindowBound);

    if (m_LowerWindowBound <= m_RangeMin)
      m_LowerWindowBound = m_RangeMin;
    if (m_UpperWindowBound <= m_RangeMin)
      m_UpperWindowBound = m_RangeMin + 1;
    if (m_LowerWindowBound >= m_RangeMax)
      m_LowerWindowBound = m_RangeMax - 1;
    if (m_UpperWindowBound >= m_RangeMax)
      m_UpperWindowBound = m_RangeMax;

    if (m_LowerWindowBound == m_UpperWindowBound)
    {
      m_UpperWindowBound += 0.5;
      m_LowerWindowBound -= 0.5;

      m_UpperWindowBound = std::min(m_UpperWindowBound, m_RangeMax);
      m_LowerWindowBound = std::max(m_LowerWindowBound, m_RangeMin);
    }
  }
}

mitk::LevelWindow::LevelWindow(mitk::ScalarType level, mitk::ScalarType window)
  : m_LowerWindowBound(level - window / 2.0),
    m_UpperWindowBound(level + window / 2.0),
    m_RangeMin(-2048.0),
    m_RangeMax(4096.0),
    m_DefaultLowerBound(-2048.0),
    m_DefaultUpperBound(4096.0),
    m_IsFloatingImage(false),
    m_Fixed(false)
{
  SetDefaultLevelWindow(level, window);
  SetLevelWindow(level, window, true);
}

mitk::LevelWindow::LevelWindow(const mitk::LevelWindow &levWin)
  : m_LowerWindowBound(levWin.GetLowerWindowBound()),
    m_UpperWindowBound(levWin.GetUpperWindowBound()),
    m_RangeMin(levWin.GetRangeMin()),
    m_RangeMax(levWin.GetRangeMax()),
    m_DefaultLowerBound(levWin.GetDefaultLowerBound()),
    m_DefaultUpperBound(levWin.GetDefaultUpperBound()),
    m_IsFloatingImage(levWin.IsFloatingValues()),
    m_Fixed(levWin.GetFixed())
{
}

mitk::LevelWindow::~LevelWindow()
{
}

mitk::ScalarType mitk::LevelWindow::GetLevel() const
{
  return (m_UpperWindowBound - m_LowerWindowBound) / 2.0 + m_LowerWindowBound;
}

mitk::ScalarType mitk::LevelWindow::GetWindow() const
{
  return (m_UpperWindowBound - m_LowerWindowBound);
}

mitk::ScalarType mitk::LevelWindow::GetDefaultLevel() const
{
  return ((m_DefaultUpperBound + m_DefaultLowerBound) / 2.0);
}

mitk::ScalarType mitk::LevelWindow::GetDefaultWindow() const
{
  return ((m_DefaultUpperBound - m_DefaultLowerBound));
}

void mitk::LevelWindow::ResetDefaultLevelWindow()
{
  SetLevelWindow(GetDefaultLevel(), GetDefaultWindow());
}

mitk::ScalarType mitk::LevelWindow::GetLowerWindowBound() const
{
  return m_LowerWindowBound;
}

mitk::ScalarType mitk::LevelWindow::GetUpperWindowBound() const
{
  return m_UpperWindowBound;
}

void mitk::LevelWindow::SetDefaultLevelWindow(mitk::ScalarType level, mitk::ScalarType window)
{
  SetDefaultBoundaries((level - (window / 2.0)), (level + (window / 2.0)));
}

void mitk::LevelWindow::SetLevelWindow(mitk::ScalarType level, mitk::ScalarType window, bool expandRangesIfNecessary)
{
  SetWindowBounds((level - (window / 2.0)), (level + (window / 2.0)), expandRangesIfNecessary);
}

void mitk::LevelWindow::SetWindowBounds(mitk::ScalarType lowerBound,
                                        mitk::ScalarType upperBound,
                                        bool expandRangesIfNecessary)
{
  if (IsFixed())
    return;

  m_LowerWindowBound = lowerBound;
  m_UpperWindowBound = upperBound;

  if (expandRangesIfNecessary)
  {
    /* if caller is sure he wants exactly that level/window, we make sure the limits match */
    if (m_LowerWindowBound > m_UpperWindowBound)
      std::swap(m_LowerWindowBound, m_UpperWindowBound);
    if (m_LowerWindowBound < m_RangeMin)
    {
      m_RangeMin = m_LowerWindowBound;
    }

    if (m_UpperWindowBound > m_RangeMax)
    {
      m_RangeMax = m_UpperWindowBound;
    }
  }

  EnsureConsistency();
}

void mitk::LevelWindow::SetRangeMinMax(mitk::ScalarType min, mitk::ScalarType max)
{
  if (IsFixed())
    return;
  m_RangeMin = min;
  m_RangeMax = max;
  EnsureConsistency();
}

void mitk::LevelWindow::SetDefaultBoundaries(mitk::ScalarType low, mitk::ScalarType up)
{
  if (IsFixed())
    return;
  m_DefaultLowerBound = low;
  m_DefaultUpperBound = up;
  // Check if default window is ok
  {
    if (m_DefaultLowerBound > m_DefaultUpperBound)
      std::swap(m_DefaultLowerBound, m_DefaultUpperBound);

    if (m_DefaultLowerBound == m_DefaultUpperBound)
      m_DefaultLowerBound--;
  }
  EnsureConsistency();
}

void mitk::LevelWindow::SetToMaxWindowSize()
{
  SetWindowBounds(m_RangeMin, m_RangeMax);
}

mitk::ScalarType mitk::LevelWindow::GetRangeMin() const
{
  return m_RangeMin;
}

mitk::ScalarType mitk::LevelWindow::GetRangeMax() const
{
  return m_RangeMax;
}

mitk::ScalarType mitk::LevelWindow::GetRange() const
{
  return m_RangeMax - m_RangeMin;
}

mitk::ScalarType mitk::LevelWindow::GetDefaultUpperBound() const
{
  return m_DefaultUpperBound;
}

mitk::ScalarType mitk::LevelWindow::GetDefaultLowerBound() const
{
  return m_DefaultLowerBound;
}

void mitk::LevelWindow::ResetDefaultRangeMinMax()
{
  SetRangeMinMax(m_DefaultLowerBound, m_DefaultUpperBound);
}

void mitk::LevelWindow::SetAuto(const mitk::Image *image,
                                bool /*tryPicTags*/,
                                bool guessByCentralSlice,
                                unsigned selectedComponent)
{
  if (IsFixed())
    return;

  if (image == nullptr || !image->IsInitialized())
    return;

  if ((image->GetPixelType().GetComponentType() == 9) || (image->GetPixelType().GetComponentType() == 10))
  {
    // Floating image
    m_IsFloatingImage = true;
  }
  else
  {
    m_IsFloatingImage = false;
  }

  const mitk::Image *wholeImage = image;
  ScalarType minValue = 0.0;
  ScalarType maxValue = 0.0;
  ScalarType min2ndValue = 0.0;
  ScalarType max2ndValue = 0.0;
  mitk::ImageSliceSelector::Pointer sliceSelector = mitk::ImageSliceSelector::New();
  if (guessByCentralSlice)
  {
    sliceSelector->SetInput(image);
    sliceSelector->SetSliceNr(image->GetDimension(2) / 2);
    sliceSelector->SetTimeNr(image->GetDimension(3) / 2);
    sliceSelector->SetChannelNr(image->GetDimension(4) / 2);
    sliceSelector->Update();
    image = sliceSelector->GetOutput();
    if (image == nullptr || !image->IsInitialized())
      return;

    minValue = image->GetStatistics()->GetScalarValueMin(0, selectedComponent);
    maxValue = image->GetStatistics()->GetScalarValueMaxNoRecompute();
    min2ndValue = image->GetStatistics()->GetScalarValue2ndMinNoRecompute();
    max2ndValue = image->GetStatistics()->GetScalarValue2ndMaxNoRecompute();
    if (minValue == maxValue)
    {
      // guessByCentralSlice seems to have failed, lets look at all data
      image = wholeImage;
      minValue = image->GetStatistics()->GetScalarValueMin(0, selectedComponent);
      maxValue = image->GetStatistics()->GetScalarValueMaxNoRecompute();
      min2ndValue = image->GetStatistics()->GetScalarValue2ndMinNoRecompute();
      max2ndValue = image->GetStatistics()->GetScalarValue2ndMaxNoRecompute();
    }
  }
  else
  {
    const_cast<Image *>(image)->Update();
    minValue = image->GetStatistics()->GetScalarValueMin(0, selectedComponent);
    maxValue = image->GetStatistics()->GetScalarValueMaxNoRecompute(0);
    min2ndValue = image->GetStatistics()->GetScalarValue2ndMinNoRecompute(0);
    max2ndValue = image->GetStatistics()->GetScalarValue2ndMaxNoRecompute(0);
    for (unsigned int i = 1; i < image->GetDimension(3); ++i)
    {
      ScalarType minValueTemp = image->GetStatistics()->GetScalarValueMin(i, selectedComponent);
      if (minValue > minValueTemp)
        minValue = minValueTemp;
      ScalarType maxValueTemp = image->GetStatistics()->GetScalarValueMaxNoRecompute(i);
      if (maxValue < maxValueTemp)
        maxValue = maxValueTemp;
      ScalarType min2ndValueTemp = image->GetStatistics()->GetScalarValue2ndMinNoRecompute(i);
      if (min2ndValue > min2ndValueTemp)
        min2ndValue = min2ndValueTemp;
      ScalarType max2ndValueTemp = image->GetStatistics()->GetScalarValue2ndMaxNoRecompute(i);
      if (max2ndValue > max2ndValueTemp)
        max2ndValue = max2ndValueTemp;
    }
  }

  // Fix for bug# 344 Level Window wird bei Eris Cut bildern nicht richtig gesetzt
  if (image->GetPixelType().GetPixelType() == itk::ImageIOBase::SCALAR &&
      image->GetPixelType().GetComponentType() == itk::ImageIOBase::INT && image->GetPixelType().GetBpe() >= 8)
  {
    // the windows compiler complains about ambiguos 'pow' call, therefore static casting to (double, int)
    if (minValue == -(pow((double)2.0, static_cast<int>(image->GetPixelType().GetBpe() / 2))))
    {
      minValue = min2ndValue;
    }
  }
  // End fix

  if (minValue == maxValue)
  {
    minValue = maxValue - 1;
  }
  else
  {
    // Due to bug #8690 level window now is no longer of fixed range by default but the range adapts according to
    // levelwindow interaction
    // This is done because the range should be a little bit larger from the beginning so that the scale doesn't start
    // to resize right from the beginning
    double additionalRange = 0.15 * (maxValue - minValue);
    minValue -= additionalRange;
    maxValue += additionalRange;
  }
  SetRangeMinMax(minValue, maxValue);
  SetDefaultBoundaries(minValue, maxValue);
  /*
  if ( tryPicTags ) // level and window will be set by informations provided directly by the mitkIpPicDescriptor
  {
  if ( SetAutoByPicTags(const_cast<Image*>(image)->GetPic()) )
  {
  return;
  }
  }
  */

  unsigned int numPixelsInDataset = image->GetDimensions()[0];
  for (unsigned int k = 0; k < image->GetDimension(); ++k)
    numPixelsInDataset *= image->GetDimensions()[k];
  unsigned int minCount = image->GetStatistics()->GetCountOfMinValuedVoxelsNoRecompute();
  unsigned int maxCount = image->GetStatistics()->GetCountOfMaxValuedVoxelsNoRecompute();
  ScalarType minCountFraction = minCount / ScalarType(numPixelsInDataset);
  ScalarType maxCountFraction = maxCount / ScalarType(numPixelsInDataset);

  if (min2ndValue == maxValue)
  {
    // noop; full range is fine
  }

  else if (min2ndValue == max2ndValue)
  {
    ScalarType minDelta = std::min(min2ndValue - minValue, maxValue - min2ndValue);
    minValue = min2ndValue - minDelta;
    maxValue = min2ndValue + minDelta;
  }

  // now we can assume more than three distict scalar values
  else
  {
    ScalarType innerRange = max2ndValue - min2ndValue;

    if (minCountFraction > 0.2) 
    {
      ScalarType halfInnerRangeGapMinValue = min2ndValue - innerRange / 2.0;
      minValue = std::max(minValue, halfInnerRangeGapMinValue);
    }
    else 
    {
      minValue = min2ndValue;
    }

    if (maxCountFraction > 0.2) 
    {
      ScalarType halfInnerRangeGapMaxValue = max2ndValue + innerRange / 2.0;
      maxValue = std::min(maxValue, halfInnerRangeGapMaxValue);
    }
    else 
    {
      maxValue = max2ndValue;
    }
  }
  SetWindowBounds(minValue, maxValue);
  SetDefaultLevelWindow((maxValue - minValue) / 2 + minValue, maxValue - minValue);
}

void mitk::LevelWindow::SetToImageRange(const mitk::Image *image)
{
  if (IsFixed())
    return;

  if (image == NULL || !image->IsInitialized())
    return;

  ScalarType minValue = image->GetStatistics()->GetScalarValueMin(0);
  ScalarType maxValue = image->GetStatistics()->GetScalarValueMaxNoRecompute(0);
  SetRangeMinMax(minValue, maxValue);
  SetDefaultBoundaries(minValue, maxValue);
  SetWindowBounds(minValue, maxValue);
  SetDefaultLevelWindow((maxValue - minValue) / 2 + minValue, maxValue - minValue);
}

void mitk::LevelWindow::SetFixed(bool fixed)
{
  m_Fixed = fixed;
}

bool mitk::LevelWindow::GetFixed() const
{
  return m_Fixed;
}

bool mitk::LevelWindow::IsFixed() const
{
  return m_Fixed;
}

bool mitk::LevelWindow::IsFloatingValues() const
{
  return m_IsFloatingImage;
}

void mitk::LevelWindow::SetFloatingValues(bool value)
{
  m_IsFloatingImage = value;
}

bool mitk::LevelWindow::operator==(const mitk::LevelWindow &levWin) const
{
  return mitk::Equal(this->m_RangeMin, levWin.m_RangeMin, mitk::sqrteps) &&
         mitk::Equal(this->m_RangeMax, levWin.m_RangeMax, mitk::sqrteps) &&
         mitk::Equal(this->m_DefaultLowerBound, levWin.m_DefaultLowerBound, mitk::sqrteps) &&
         mitk::Equal(this->m_DefaultUpperBound, levWin.m_DefaultUpperBound, mitk::sqrteps) &&
         mitk::Equal(this->m_LowerWindowBound, levWin.m_LowerWindowBound, mitk::sqrteps) &&
         mitk::Equal(this->m_UpperWindowBound, levWin.m_UpperWindowBound, mitk::sqrteps) &&
         m_Fixed == levWin.IsFixed() && m_IsFloatingImage == levWin.IsFloatingValues();
}

bool mitk::LevelWindow::operator!=(const mitk::LevelWindow &levWin) const
{
  return !((*this) == levWin);
}

mitk::LevelWindow &mitk::LevelWindow::operator=(const mitk::LevelWindow &levWin)
{
  if (this == &levWin)
  {
    return *this;
  }
  else
  {
    m_RangeMin = levWin.GetRangeMin();
    m_RangeMax = levWin.GetRangeMax();
    m_LowerWindowBound = levWin.GetLowerWindowBound();
    m_UpperWindowBound = levWin.GetUpperWindowBound();
    m_DefaultLowerBound = levWin.GetDefaultLowerBound();
    m_DefaultUpperBound = levWin.GetDefaultUpperBound();
    m_Fixed = levWin.GetFixed();
    m_IsFloatingImage = levWin.IsFloatingValues();
    return *this;
  }
}