#include <mitkDiffusionImageCorrectionFilter.h>

Inheritance diagram for mitk::DiffusionImageCorrectionFilter:

Collaboration diagram for mitk::DiffusionImageCorrectionFilter:

Public Types
typedef vnl_vector_fixed< double, 3 >	GradientDirectionType

typedef vnl_matrix_fixed< double, 3, 3 >	TransformMatrixType

typedef itk::VectorContainer< unsigned int, GradientDirectionType >	GradientDirectionContainerType

typedef GradientDirectionContainerType::Pointer	GradientDirectionContainerPointerType

typedef std::vector< TransformMatrixType >	TransformsVectorType

typedef Superclass::OutputType	DiffusionImageType

typedef DiffusionImageType::Pointer	DiffusionImageTypePointer

typedef itk::VectorImage< DiffusionPixelType, 3 >	ImageType

Public Types inherited from mitk::ImageSource
typedef ImageSource	Self

typedef BaseDataSource	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef mitk::Image	OutputImageType
	Some convenient typedefs. More...

typedef OutputImageType	OutputType

typedef OutputImageType::Pointer	OutputImagePointer

typedef SlicedData::RegionType	OutputImageRegionType

Public Types inherited from mitk::BaseDataSource
typedef BaseDataSource	Self

typedef itk::ProcessObject	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef BaseData	OutputType

typedef itk::DataObject::DataObjectIdentifierType	DataObjectIdentifierType

Public Member Functions
	mitkClassMacro (DiffusionImageCorrectionFilter, ImageSource) itkSimpleNewMacro(Self) typedef short DiffusionPixelType

void	SetImage (DiffusionImageTypePointer input)
	Set the mitk image ( a 3d+t image ) which is to be reinterpreted as dw image. More...

void	CorrectDirections (const TransformsVectorType &)
	Correct each gradient direction according to the given transform. More...

void	CorrectDirections (const TransformMatrixType &)
	Correct all gradient directions according to the given transform. More...

virtual void	GenerateOutputInformation () override

Public Member Functions inherited from mitk::ImageSource
virtual std::vector< std::string >	GetClassHierarchy () const override

virtual const char *	GetClassName () const

Pointer	Clone () const

OutputType *	GetOutput ()
	Get the output data of this image source object. More...

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual itk::DataObject::Pointer	MakeOutput (DataObjectPointerArraySizeType idx) override
	Make a DataObject of the correct type to used as the specified output. More...

virtual itk::DataObject::Pointer	MakeOutput (const DataObjectIdentifierType &name) override

virtual vtkImageData *	GetVtkImageData ()

virtual const vtkImageData *	GetVtkImageData () const

Public Member Functions inherited from mitk::BaseDataSource
OutputType *	GetOutput ()

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual void	GraftOutput (OutputType *output)
	Graft the specified BaseData onto this BaseDataSource's output. More...

virtual void	GraftOutput (const DataObjectIdentifierType &key, OutputType *output)

virtual void	GraftNthOutput (unsigned int idx, OutputType *output)
	Graft the specified base data object onto this BaseDataSource's idx'th output. More...

bool	Updating () const
	Access itk::ProcessObject::m_Updating. More...

Protected Member Functions
	DiffusionImageCorrectionFilter ()

virtual	~DiffusionImageCorrectionFilter ()

TransformMatrixType	GetRotationComponent (const TransformMatrixType &)
	Get the rotation component following the Finite Strain. More...

Protected Member Functions inherited from mitk::ImageSource
	ImageSource ()

virtual	~ImageSource ()

virtual void	GenerateData () override
	A version of GenerateData() specific for image processing filters. More...

virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, itk::ThreadIdType threadId)
	If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData(). More...

virtual void	PrepareOutputs () override
	This method is intentionally left blank. More...

virtual void	AllocateOutputs ()
	The GenerateData method normally allocates the buffers for all of the outputs of a filter. More...

virtual void	BeforeThreadedGenerateData ()
	If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). More...

virtual void	AfterThreadedGenerateData ()
	If an imaging filter needs to perform processing after all processing threads have completed, the filter can can provide an implementation for AfterThreadedGenerateData(). More...

virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
	Split the output's RequestedRegion into "num" pieces, returning region "i" as "splitRegion". More...

Protected Member Functions inherited from mitk::BaseDataSource
	BaseDataSource ()

virtual	~BaseDataSource ()

Protected Attributes
DiffusionImageTypePointer	m_SourceImage

Additional Inherited Members
Static Public Member Functions inherited from mitk::ImageSource
static const char *	GetStaticNameOfClass ()

static Pointer	New ()
	Method for creation through the object factory. More...

Static Public Member Functions inherited from mitk::BaseDataSource
static const char *	GetStaticNameOfClass ()

Static Protected Member Functions inherited from mitk::ImageSource
static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)
	Static function used as a "callback" by the MultiThreader. More...

Static Protected Member Functions inherited from mitk::BaseDataSource
static Pointer	New ()

Detailed Description

Definition at line 28 of file mitkDiffusionImageCorrectionFilter.h.

Member Typedef Documentation

typedef Superclass::OutputType mitk::DiffusionImageCorrectionFilter::DiffusionImageType

Definition at line 47 of file mitkDiffusionImageCorrectionFilter.h.

typedef DiffusionImageType::Pointer mitk::DiffusionImageCorrectionFilter::DiffusionImageTypePointer

Definition at line 48 of file mitkDiffusionImageCorrectionFilter.h.

typedef GradientDirectionContainerType::Pointer mitk::DiffusionImageCorrectionFilter::GradientDirectionContainerPointerType

Definition at line 43 of file mitkDiffusionImageCorrectionFilter.h.

typedef itk::VectorContainer< unsigned int, GradientDirectionType > mitk::DiffusionImageCorrectionFilter::GradientDirectionContainerType

Definition at line 42 of file mitkDiffusionImageCorrectionFilter.h.

typedef vnl_vector_fixed< double, 3 > mitk::DiffusionImageCorrectionFilter::GradientDirectionType

Definition at line 39 of file mitkDiffusionImageCorrectionFilter.h.

typedef itk::VectorImage<DiffusionPixelType,3> mitk::DiffusionImageCorrectionFilter::ImageType

Definition at line 49 of file mitkDiffusionImageCorrectionFilter.h.

typedef vnl_matrix_fixed< double, 3, 3 > mitk::DiffusionImageCorrectionFilter::TransformMatrixType

Definition at line 40 of file mitkDiffusionImageCorrectionFilter.h.

typedef std::vector< TransformMatrixType > mitk::DiffusionImageCorrectionFilter::TransformsVectorType

Definition at line 45 of file mitkDiffusionImageCorrectionFilter.h.

Constructor & Destructor Documentation

mitk::DiffusionImageCorrectionFilter::DiffusionImageCorrectionFilter ( )

protected

Definition at line 28 of file mitkDiffusionImageCorrectionFilter.cpp.

virtual mitk::DiffusionImageCorrectionFilter::~DiffusionImageCorrectionFilter ( )

inlineprotectedvirtual

Definition at line 79 of file mitkDiffusionImageCorrectionFilter.h.

Member Function Documentation

void mitk::DiffusionImageCorrectionFilter::CorrectDirections ( const TransformsVectorType & transformations )

Correct each gradient direction according to the given transform.

The size of the input is expected to correspond to the count of gradient images in the image.

Definition at line 67 of file mitkDiffusionImageCorrectionFilter.cpp.

References mitk::DiffusionPropertyHelper::GRADIENTCONTAINERPROPERTYNAME, mitkThrow, and mitk::New().

void mitk::DiffusionImageCorrectionFilter::CorrectDirections ( const TransformMatrixType & transformation )

Correct all gradient directions according to the given transform.

This will apply the same rotation to all directions.

Definition at line 103 of file mitkDiffusionImageCorrectionFilter.cpp.

References mitk::DiffusionPropertyHelper::GRADIENTCONTAINERPROPERTYNAME, and mitkThrow.

virtual void mitk::DiffusionImageCorrectionFilter::GenerateOutputInformation ( void )

inlineoverridevirtual

Definition at line 74 of file mitkDiffusionImageCorrectionFilter.h.

mitk::DiffusionImageCorrectionFilter::TransformMatrixType mitk::DiffusionImageCorrectionFilter::GetRotationComponent ( const TransformMatrixType & A )

protected

Get the rotation component following the Finite Strain.

For a given transformation \(A\) its rotation component is defined as \( (AA^{T})^{-1/2}\).

The computation first computes \( B = AA^T \) and then estimates the square root. Square root of diagonal matrices is defined as \( S = Q * \sqrt{C} * Q^{-1} \) with \( C \) having the eigenvalues on the diagonal.

Definition at line 36 of file mitkDiffusionImageCorrectionFilter.cpp.

mitk::DiffusionImageCorrectionFilter::mitkClassMacro	(	DiffusionImageCorrectionFilter	,
		ImageSource
	)

class macros

void mitk::DiffusionImageCorrectionFilter::SetImage ( DiffusionImageTypePointer input )

inline

Set the mitk image ( a 3d+t image ) which is to be reinterpreted as dw image.

Parameters

mitkImage

Definition at line 55 of file mitkDiffusionImageCorrectionFilter.h.

Member Data Documentation

DiffusionImageTypePointer mitk::DiffusionImageCorrectionFilter::m_SourceImage

protected

Definition at line 93 of file mitkDiffusionImageCorrectionFilter.h.

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation