Medical Imaging Interaction Toolkit  2016.11.0
Medical Imaging Interaction Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | List of all members
mitk::ConnectomicsSimulatedAnnealingCostFunctionModularity Class Reference

A cost function using the modularity of the network. More...

#include <mitkConnectomicsSimulatedAnnealingCostFunctionModularity.h>

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Public Types

typedef mitk::ConnectomicsNetwork::VertexDescriptorType VertexDescriptorType
 
typedef std::map< VertexDescriptorType, int > ToModuleMapType
 
typedef std::map< VertexDescriptorType, VertexDescriptorType > VertexToVertexMapType
 

Public Member Functions

 mitkClassMacro (ConnectomicsSimulatedAnnealingCostFunctionModularity, mitk::ConnectomicsSimulatedAnnealingCostFunctionBase)
 
Pointer Clone () const
 
double Evaluate (mitk::ConnectomicsNetwork::Pointer network, ToModuleMapType *vertexToModuleMap) const
 
double CalculateModularity (mitk::ConnectomicsNetwork::Pointer network, ToModuleMapType *vertexToModuleMap) const
 
- Public Member Functions inherited from mitk::ConnectomicsSimulatedAnnealingCostFunctionBase
 mitkClassMacroItkParent (ConnectomicsSimulatedAnnealingCostFunctionBase, itk::Object)
 
Pointer Clone () const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from mitk::ConnectomicsSimulatedAnnealingCostFunctionBase
static Pointer New ()
 

Protected Member Functions

int getNumberOfModules (ToModuleMapType *vertexToModuleMap) const
 
 ConnectomicsSimulatedAnnealingCostFunctionModularity ()
 
 ~ConnectomicsSimulatedAnnealingCostFunctionModularity ()
 
- Protected Member Functions inherited from mitk::ConnectomicsSimulatedAnnealingCostFunctionBase
 ConnectomicsSimulatedAnnealingCostFunctionBase ()
 
 ~ConnectomicsSimulatedAnnealingCostFunctionBase ()
 

Detailed Description

A cost function using the modularity of the network.

Definition at line 28 of file mitkConnectomicsSimulatedAnnealingCostFunctionModularity.h.

Member Typedef Documentation

typedef std::map< VertexDescriptorType, int > mitk::ConnectomicsSimulatedAnnealingCostFunctionModularity::ToModuleMapType

Definition at line 33 of file mitkConnectomicsSimulatedAnnealingCostFunctionModularity.h.

typedef mitk::ConnectomicsNetwork::VertexDescriptorType mitk::ConnectomicsSimulatedAnnealingCostFunctionModularity::VertexDescriptorType

Definition at line 32 of file mitkConnectomicsSimulatedAnnealingCostFunctionModularity.h.

typedef std::map< VertexDescriptorType, VertexDescriptorType > mitk::ConnectomicsSimulatedAnnealingCostFunctionModularity::VertexToVertexMapType

Definition at line 34 of file mitkConnectomicsSimulatedAnnealingCostFunctionModularity.h.

Constructor & Destructor Documentation

mitk::ConnectomicsSimulatedAnnealingCostFunctionModularity::ConnectomicsSimulatedAnnealingCostFunctionModularity ( )
protected

Definition at line 19 of file mitkConnectomicsSimulatedAnnealingCostFunctionModularity.cpp.

mitk::ConnectomicsSimulatedAnnealingCostFunctionModularity::~ConnectomicsSimulatedAnnealingCostFunctionModularity ( )
protected

Definition at line 23 of file mitkConnectomicsSimulatedAnnealingCostFunctionModularity.cpp.

Member Function Documentation

double mitk::ConnectomicsSimulatedAnnealingCostFunctionModularity::CalculateModularity ( mitk::ConnectomicsNetwork::Pointer  network,
ToModuleMapType *  vertexToModuleMap 
) const

Definition at line 34 of file mitkConnectomicsSimulatedAnnealingCostFunctionModularity.cpp.

References MBI_ERROR.

Pointer mitk::ConnectomicsSimulatedAnnealingCostFunctionModularity::Clone ( ) const
double mitk::ConnectomicsSimulatedAnnealingCostFunctionModularity::Evaluate ( mitk::ConnectomicsNetwork::Pointer  network,
ToModuleMapType *  vertexToModuleMap 
) const

Definition at line 27 of file mitkConnectomicsSimulatedAnnealingCostFunctionModularity.cpp.

Referenced by mitk::ConnectomicsSimulatedAnnealingPermutationModularity::Evaluate().

int mitk::ConnectomicsSimulatedAnnealingCostFunctionModularity::getNumberOfModules ( ToModuleMapType *  vertexToModuleMap) const
protected

Definition at line 108 of file mitkConnectomicsSimulatedAnnealingCostFunctionModularity.cpp.

mitk::ConnectomicsSimulatedAnnealingCostFunctionModularity::mitkClassMacro ( ConnectomicsSimulatedAnnealingCostFunctionModularity  ,
mitk::ConnectomicsSimulatedAnnealingCostFunctionBase   
)

Standard class typedefs. Method for creation through the object factory.

static Pointer mitk::ConnectomicsSimulatedAnnealingCostFunctionModularity::New ( )
static

Referenced by mitk::ConnectomicsSimulatedAnnealingPermutationModularity::splitModule().

The documentation for this class was generated from the following files: