TensorDerivedMapsExtraction.cpp File Reference

#include <mitkIOUtil.h>
#include "mitkImage.h"
#include <mitkImageCast.h>
#include "mitkITKImageImport.h"
#include <iostream>
#include <fstream>
#include <mitkTensorImage.h>
#include <mitkDiffusionPropertyHelper.h>
#include "itkTensorDerivedMeasurementsFilter.h"
#include "itkDiffusionTensor3DReconstructionImageFilter.h"
#include "mitkCommandLineParser.h"
#include <itkImageFileWriter.h>
#include <itkNrrdImageIO.h>
#include <itkDiffusionTensor3D.h>

Go to the source code of this file.

Typedefs
typedef short	DiffusionPixelType
typedef double	TTensorPixelType

Functions
static void	ExtractMapsAndSave (mitk::TensorImage::Pointer tensorImage, std::string filename, std::string postfix="")
int	main (int argc, char *argv[])

Typedef Documentation

typedef short DiffusionPixelType

Definition at line 39 of file TensorDerivedMapsExtraction.cpp.

typedef double TTensorPixelType

Definition at line 40 of file TensorDerivedMapsExtraction.cpp.

Function Documentation

static void ExtractMapsAndSave ( mitk::TensorImage::Pointer  tensorImage, std::string  filename, std::string  postfix = ""  )

static

Definition at line 42 of file TensorDerivedMapsExtraction.cpp.

References mitk::CastToItkImage(), mitk::New(), mitk::Image::New(), and mitk::IOUtil::Save().

Referenced by main().

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 105 of file TensorDerivedMapsExtraction.cpp.

References mitkCommandLineParser::addArgument(), us::any_cast(), mitk::CastToItkImage(), ExtractMapsAndSave(), mitk::DiffusionPropertyHelper::GetGradientContainer(), mitk::DiffusionPropertyHelper::GetReferenceBValue(), mitkCommandLineParser::helpText(), mitkCommandLineParser::InputFile, mitk::DiffusionPropertyHelper::IsDiffusionWeightedImage(), mitk::IOUtil::LoadImage(), MITK_ERROR, mitk::TensorImage::New(), mitk::New(), mitkCommandLineParser::OutputDirectory, mitkCommandLineParser::parseArguments(), mitkCommandLineParser::setArgumentPrefix(), mitkCommandLineParser::setCategory(), mitkCommandLineParser::setContributor(), mitkCommandLineParser::setDescription(), mitkCommandLineParser::setTitle(), and mitkCommandLineParser::String.