NativeHeadCTSegmentation.cpp File Reference

#include <mitkCoreObjectFactory.h>
#include "mitkImage.h"
#include <boost/lexical_cast.hpp>
#include "mitkCommandLineParser.h"
#include <mitkIOUtil.h>
#include <itksys/SystemTools.hxx>
#include <mitkITKImageImport.h>
#include <mitkImageCast.h>
#include <mitkProperties.h>
#include <itkImageRegionIterator.h>
#include <mitkCLUtil.h>
#include <mitkVigraRandomForestClassifier.h>
#include <mitkAbstractFileReader.h>
#include <QDir>
#include <QString>
#include <QStringList>
#include <mitkImageAccessByItk.h>

Go to the source code of this file.

Typedefs
typedef unsigned int	uint

Functions
void	ReadMitkProjectImageAndMask (std::string input_file, mitk::Image::Pointer &raw_image, mitk::Image::Pointer &class_mask, Image::Pointer &brain_mask)
std::map< unsigned int, double >	VolumeUnderMaskByLabel (mitk::Image::Pointer mask)
int	main (int argc, char *argv[])

Typedef Documentation

typedef unsigned int uint

Definition at line 46 of file NativeHeadCTSegmentation.cpp.

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 53 of file NativeHeadCTSegmentation.cpp.

References AccessFixedDimensionByItk_2, mitkCommandLineParser::addArgument(), us::any_cast(), mitk::CLUtil::Axial, mitk::CLUtil::CountVoxel(), mitk::CLUtil::DilateGrayscale(), mitk::CLUtil::ErodeGrayscale(), mitk::CLUtil::FillHoleGrayscale(), mitkCommandLineParser::InputDirectory, mitk::CLUtil::itkSampleLabel(), MITK_INFO, mitk::New(), mitkCommandLineParser::OutputDirectory, mitkCommandLineParser::parseArguments(), mitk::CLUtil::ProbabilityMap(), ReadMitkProjectImageAndMask(), mitk::IOUtil::Save(), mitkCommandLineParser::setArgumentPrefix(), mitkCommandLineParser::setCategory(), mitkCommandLineParser::setContributor(), mitkCommandLineParser::setDescription(), mitkCommandLineParser::setTitle(), mitkCommandLineParser::String, and VolumeUnderMaskByLabel().

void ReadMitkProjectImageAndMask	(	std::string	input_file,
		mitk::Image::Pointer &	raw_image,
		mitk::Image::Pointer &	class_mask,
		Image::Pointer &	brain_mask
	)

Definition at line 179 of file NativeHeadCTSegmentation.cpp.

References mitk::CLUtil::CountVoxel(), mitk::IOUtil::Load(), mitk::ImageMappingHelper::map(), and mitk::CLUtil::MergeLabels().

Referenced by main().

std::map< unsigned int, double > VolumeUnderMaskByLabel

(

mitk::Image::Pointer

mask

)

Definition at line 212 of file NativeHeadCTSegmentation.cpp.

References mitk::CastToItkImage().

Referenced by main().