Medical Imaging Interaction Toolkit  2023.12.99-63768887
Medical Imaging Interaction Toolkit
QmitknnUNetFolderParser.h
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1 /*============================================================================
2 
3 The Medical Imaging Interaction Toolkit (MITK)
4 
5 Copyright (c) German Cancer Research Center (DKFZ)
6 All rights reserved.
7 
8 Use of this source code is governed by a 3-clause BSD license that can be
9 found in the LICENSE file.
10 
11 ============================================================================*/
12 
13 #ifndef QmitknnUNetFolderParser_h
14 #define QmitknnUNetFolderParser_h
15 
16 #include <QDirIterator>
17 #include <memory>
18 #include <functional>
19 #include <QString>
20 #include <vector>
21 
26 struct FolderNode
27 {
28  QString name;
29  QString path; // parent
30  std::vector<std::shared_ptr<FolderNode>> subFolders;
31 };
32 
40 {
41 public:
47  QmitknnUNetFolderParser(const QString parentFolder);
52  ~QmitknnUNetFolderParser() = default;
58  QString getResultsFolder();
59 
67  template <typename T>
69  {
70  auto models = GetSubFolderNamesFromNode<T>(m_RootNode);
71  return models;
72  }
73 
82  template <typename T>
83  T getTasksForModel(const QString &modelName)
84  {
85  std::shared_ptr<FolderNode> modelNode = GetSubNodeMatchingNameCrietria(modelName, m_RootNode);
86  auto tasks = GetSubFolderNamesFromNode<T>(modelNode);
87  return tasks;
88  }
89 
98  template <typename T>
99  T getModelsForTask(const QString &taskName)
100  {
101  T modelsForTask;
102  auto models = GetSubFolderNamesFromNode<T>(m_RootNode);
103  foreach (QString model, models)
104  {
105  QStringList taskList = getTasksForModel<QStringList>(model);
106  if (taskList.contains(taskName, Qt::CaseInsensitive))
107  {
108  modelsForTask << model;
109  }
110  }
111  return modelsForTask;
112  }
113 
121  template <typename T>
123  {
124  T allTasks;
125  auto models = GetSubFolderNamesFromNode<T>(m_RootNode);
126  foreach (QString model, models)
127  {
128  allTasks << getTasksForModel<QStringList>(model);
129  }
130  return allTasks;
131  }
132 
142  template <typename T>
143  T getTrainerPlannersForTask(const QString &taskName, const QString &modelName)
144  {
145  std::shared_ptr<FolderNode> modelNode = GetSubNodeMatchingNameCrietria(modelName, m_RootNode);
146  std::shared_ptr<FolderNode> taskNode = GetSubNodeMatchingNameCrietria(taskName, modelNode);
147  auto tps = GetSubFolderNamesFromNode<T>(taskNode);
148  return tps;
149  }
150 
162  template <typename T>
163  T getFoldsForTrainerPlanner(const QString &trainer,
164  const QString &planner,
165  const QString &taskName,
166  const QString &modelName)
167  {
168  std::shared_ptr<FolderNode> modelNode = GetSubNodeMatchingNameCrietria(modelName, m_RootNode);
169  std::shared_ptr<FolderNode> taskNode = GetSubNodeMatchingNameCrietria(taskName, modelNode);
170  QString trainerPlanner = trainer + QString("__") + planner;
171  std::shared_ptr<FolderNode> tpNode = GetSubNodeMatchingNameCrietria(trainerPlanner, taskNode);
172  auto folds = GetSubFolderNamesFromNode<T>(tpNode);
173  return folds;
174  }
175 
176 private:
177  const int m_LEVEL = 4;
178  std::shared_ptr<FolderNode> m_RootNode;
179 
186  std::function<bool(QString)> RuleEngine(int level);
187 
195  std::shared_ptr<FolderNode> GetSubNodeMatchingNameCrietria(const QString &queryName, std::shared_ptr<FolderNode> parentNode);
196 
205  template <typename T>
206  T GetSubFolderNamesFromNode(const std::shared_ptr<FolderNode> parent)
207  {
208  T folders;
209  std::vector<std::shared_ptr<FolderNode>> subNodes = parent->subFolders;
210  for (std::shared_ptr<FolderNode> folder : subNodes)
211  {
212  folders.push_back(folder->name);
213  }
214  return folders;
215  }
216 
224  void InitDirs(std::shared_ptr<FolderNode> parent, int level);
225 
233  void DeleteDirs(std::shared_ptr<FolderNode> parent, int level);
234 
243  template <typename T>
244  T FetchFoldersFromDir(const QString &path, std::function<bool(QString)> callback)
245  {
246  T folders;
247  for (QDirIterator it(path, QDir::AllDirs, QDirIterator::NoIteratorFlags); it.hasNext();)
248  {
249  it.next();
250  if (!it.fileName().startsWith('.') && callback(it.filePath()))
251  {
252  folders.push_back(it.fileName());
253  }
254  }
255  return folders;
256  }
257 };
258 #endif
QmitknnUNetFolderParser::QmitknnUNetFolderParser
QmitknnUNetFolderParser(const QString parentFolder)
Construct a new QmitknnUNetFolderParser object Initializes root folder node object pointer calls.
FolderNode
Struct to store each (Folder) Node of the hierarchy tree structure.
Definition: QmitknnUNetFolderParser.h:26
QmitknnUNetFolderParser
Class to store and retreive folder hierarchy information of RESULTS_FOLDER. Only Root node is explici...
Definition: QmitknnUNetFolderParser.h:39
FolderNode::subFolders
std::vector< std::shared_ptr< FolderNode > > subFolders
Definition: QmitknnUNetFolderParser.h:30
QmitknnUNetFolderParser::getTrainerPlannersForTask
T getTrainerPlannersForTask(const QString &taskName, const QString &modelName)
Returns the trainer / planner names for a given task & model. Template function, type can be any of s...
Definition: QmitknnUNetFolderParser.h:143
QmitknnUNetFolderParser::getTasksForModel
T getTasksForModel(const QString &modelName)
Returns the task names for a given model. Template function, type can be any of stl or Qt containers ...
Definition: QmitknnUNetFolderParser.h:83
QmitknnUNetFolderParser::getResultsFolder
QString getResultsFolder()
Returns the "Results Folder" string which is parent path of the root node.
QmitknnUNetFolderParser::~QmitknnUNetFolderParser
~QmitknnUNetFolderParser()=default
Destroy the QmitknnUNetFolderParser object.
QmitknnUNetFolderParser::getModelsForTask
T getModelsForTask(const QString &taskName)
Returns the models names for a given task. Template function, type can be any of stl or Qt containers...
Definition: QmitknnUNetFolderParser.h:99
QmitknnUNetFolderParser::getAllTasks
T getAllTasks()
Returns all the task names present in the root node with possible duplicates. Template function,...
Definition: QmitknnUNetFolderParser.h:122
QmitknnUNetFolderParser::getFoldsForTrainerPlanner
T getFoldsForTrainerPlanner(const QString &trainer, const QString &planner, const QString &taskName, const QString &modelName)
Returns the Folds names for a given trainer,planner,task & model name. Template function,...
Definition: QmitknnUNetFolderParser.h:163
FolderNode::path
QString path
Definition: QmitknnUNetFolderParser.h:29
QmitknnUNetFolderParser::getModelNames
T getModelNames()
Returns the Model Names from root node. Template function, type can be any of stl or Qt containers wh...
Definition: QmitknnUNetFolderParser.h:68
FolderNode::name
QString name
Definition: QmitknnUNetFolderParser.h:28