MITK Command Line Apps

MITK provides a set of small command line tools, each designed to perform a specific task. For example, resampling an image or converting between file formats.

These tools offer command line access to various MITK features, making it easier to process data in batch workflows.

Below is a list of the command line apps included in the MITK Workbench release configuration, along with usage instructions.

List of Command Line Apps

• MitkConvertToMultiLabelSegmentation User Guide – Converts input data into an MITK Multi-Label Segmentation
• MitkDICOMVolumeDiagnostics User Guide – Performs diagnostics on DICOM volume reading
• MITKFileConverter User Guide – Converts between supported MITK file formats
• MitkImageTypeConverter User Guide – Converts scalar pixel types
• MitkFuse3Dto4DImage User Guide – Fuses multiple 3D images into a 4D dynamic image
• MitkGenericFitting User Guide – Performs generic fitting on 4D image data
• MitkMapImage User Guide – Maps an image or segmentation based on a registration
• MitkMatchImage User Guide – Determines the registration between a moving and a target image
• MitkSplit4Dto3DImage User Guide – Splits a 4D dynamic image into individual 3D frames
• MitkStitch3DImages User Guide – Stitches multiple 3D images into a larger composite image