ImageFilter for region growing with an adaptive threshold iterator. More...

#include <itkConnectedAdaptiveThresholdImageFilter.h>

Inheritance diagram for itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >:

Collaboration diagram for itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >:

Public Types
typedef ConnectedAdaptiveThresholdImageFilter	Self

typedef ConnectedThresholdImageFilter< TInputImage, TOutputImage >	Superclass

typedef SmartPointer< Self >	Pointer

typedef SmartPointer< const Self >	ConstPointer

typedef TInputImage	InputImageType

typedef TOutputImage	OutputImageType

typedef OutputImageType::Pointer	OutputImagePointer

typedef InputImageType::IndexType	IndexType

typedef InputImageType::PixelType	PixelType

Public Member Functions
Pointer	Clone () const

virtual const char *	GetClassName () const

void	SetGrowingDirectionIsUpwards (bool upwards)
	Set the growing direction for adaptive thresholding. More...

void	SetFineDetectionMode (bool fine)
	Switch between fine and raw leakage detection mode. More...

int	GetSeedpointValue (void)
	Get the pixel value at the seed point. More...

int	GetLeakagePoint (void)
	Get the detected leakage point value. More...

IndexType	CorrectSeedPointPosition (unsigned int sizeOfVolume, int lowerTh, int upperTh)
	Correct the seed point position if its value is outside the threshold range. More...

void	CropMask (unsigned int croppingSize)
	Set all voxels in a cubic region around the seed point to zero. More...

unsigned int	AdjustIteratorMask ()
	Modify the iterator mask to accumulate previous segmentation results. More...

void	SetParameterForFineSegmentation (TOutputImage *iteratorMaskForFineSegmentation, unsigned int adjLowerTh, unsigned int adjUpperTh, itk::Index< 3 > seedPoint, bool discardLeafSegmentation)
	Configure parameters for fine segmentation (bronchial tree leaf analysis). More...

TOutputImage *	GetResultImage ()
	Get the result image after filter execution. More...

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	ConnectedAdaptiveThresholdImageFilter ()

	~ConnectedAdaptiveThresholdImageFilter () override

void	GenerateData () override

Detailed Description

template<class TInputImage, class TOutputImage>
class itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >

ImageFilter for region growing with an adaptive threshold iterator.

Uses itkAdaptiveThresholdIterator to perform connected region growing with an adaptively expanding threshold range. Supports leakage detection in both raw and fine modes (e.g. for bronchial tree segmentation).

Definition at line 28 of file itkConnectedAdaptiveThresholdImageFilter.h.

Member Typedef Documentation

◆ ConstPointer

template<class TInputImage , class TOutputImage >

typedef SmartPointer<const Self> itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::ConstPointer

Definition at line 36 of file itkConnectedAdaptiveThresholdImageFilter.h.

◆ IndexType

template<class TInputImage , class TOutputImage >

typedef InputImageType::IndexType itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::IndexType

Definition at line 48 of file itkConnectedAdaptiveThresholdImageFilter.h.

◆ InputImageType

template<class TInputImage , class TOutputImage >

typedef TInputImage itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::InputImageType

Definition at line 45 of file itkConnectedAdaptiveThresholdImageFilter.h.

◆ OutputImagePointer

template<class TInputImage , class TOutputImage >

typedef OutputImageType::Pointer itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::OutputImagePointer

Definition at line 47 of file itkConnectedAdaptiveThresholdImageFilter.h.

◆ OutputImageType

template<class TInputImage , class TOutputImage >

typedef TOutputImage itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::OutputImageType

Definition at line 46 of file itkConnectedAdaptiveThresholdImageFilter.h.

◆ PixelType

template<class TInputImage , class TOutputImage >

typedef InputImageType::PixelType itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::PixelType

Definition at line 49 of file itkConnectedAdaptiveThresholdImageFilter.h.

◆ Pointer

template<class TInputImage , class TOutputImage >

typedef SmartPointer<Self> itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::Pointer

Definition at line 35 of file itkConnectedAdaptiveThresholdImageFilter.h.

◆ Self

template<class TInputImage , class TOutputImage >

typedef ConnectedAdaptiveThresholdImageFilter itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::Self

Standard class typedefs.

Definition at line 33 of file itkConnectedAdaptiveThresholdImageFilter.h.

◆ Superclass

template<class TInputImage , class TOutputImage >

typedef ConnectedThresholdImageFilter<TInputImage, TOutputImage> itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::Superclass

Definition at line 34 of file itkConnectedAdaptiveThresholdImageFilter.h.

Constructor & Destructor Documentation

◆ ConnectedAdaptiveThresholdImageFilter()

template<class TInputImage , class TOutputImage >

itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::ConnectedAdaptiveThresholdImageFilter ( )

protected

◆ ~ConnectedAdaptiveThresholdImageFilter()

template<class TInputImage , class TOutputImage >

itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::~ConnectedAdaptiveThresholdImageFilter ( )

inlineoverrideprotected

Definition at line 112 of file itkConnectedAdaptiveThresholdImageFilter.h.

Member Function Documentation

◆ AdjustIteratorMask()

template<class TInputImage , class TOutputImage >

unsigned int itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::AdjustIteratorMask ( )

Modify the iterator mask to accumulate previous segmentation results.

Returns: The largest pixel value in the segmentation mask.

◆ Clone()

template<class TInputImage , class TOutputImage >

Pointer itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::Clone ( ) const

◆ CorrectSeedPointPosition()

template<class TInputImage , class TOutputImage >

IndexType itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::CorrectSeedPointPosition	(	unsigned int	sizeOfVolume,
		int	lowerTh,
		int	upperTh
	)

Correct the seed point position if its value is outside the threshold range.

Searches within a cubic volume of the given edge length for a voxel that lies within the threshold range.

Parameters

sizeOfVolume	Edge length of the search volume.
lowerTh	Lower threshold bound.
upperTh	Upper threshold bound.

Returns: The corrected seed point index.

◆ CropMask()

template<class TInputImage , class TOutputImage >

void itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::CropMask ( unsigned int croppingSize )

Set all voxels in a cubic region around the seed point to zero.

Parameters

croppingSize Edge length of the cubic cropping region.

◆ GenerateData()

template<class TInputImage , class TOutputImage >

void itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::GenerateData ( )

overrideprotected

◆ GetClassName()

template<class TInputImage , class TOutputImage >

virtual const char* itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

◆ GetLeakagePoint()

template<class TInputImage , class TOutputImage >

int itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::GetLeakagePoint ( void )

inline

Get the detected leakage point value.

Definition at line 69 of file itkConnectedAdaptiveThresholdImageFilter.h.

◆ GetResultImage()

template<class TInputImage , class TOutputImage >

TOutputImage* itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::GetResultImage ( )

Get the result image after filter execution.

◆ GetSeedpointValue()

template<class TInputImage , class TOutputImage >

int itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::GetSeedpointValue ( void )

inline

Get the pixel value at the seed point.

Definition at line 66 of file itkConnectedAdaptiveThresholdImageFilter.h.

◆ New()

template<class TInputImage , class TOutputImage >

static Pointer itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::New ( )

static

Method for creation through the object factory.

◆ SetFineDetectionMode()

template<class TInputImage , class TOutputImage >

void itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::SetFineDetectionMode ( bool fine )

inline

Switch between fine and raw leakage detection mode.

Parameters

fine	If true, fine detection mode is used (for smaller bronchial vessels).

Definition at line 59 of file itkConnectedAdaptiveThresholdImageFilter.h.

◆ SetGrowingDirectionIsUpwards()

template<class TInputImage , class TOutputImage >

void itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::SetGrowingDirectionIsUpwards ( bool upwards )

inline

Set the growing direction for adaptive thresholding.

Parameters

upwards If true, threshold expands upwards; otherwise downwards.

Definition at line 54 of file itkConnectedAdaptiveThresholdImageFilter.h.

◆ SetParameterForFineSegmentation()

template<class TInputImage , class TOutputImage >

void itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >::SetParameterForFineSegmentation	(	TOutputImage *	iteratorMaskForFineSegmentation,
		unsigned int	adjLowerTh,
		unsigned int	adjUpperTh,
		itk::Index< 3 >	seedPoint,
		bool	discardLeafSegmentation
	)

Configure parameters for fine segmentation (bronchial tree leaf analysis).

Parameters

iteratorMaskForFineSegmentation	Pointer to the image containing the complete segmentation result of one leaf (including leakage segmentation).
adjLowerTh	Lower threshold for the segmentation without leakage.
adjUpperTh	Upper threshold for the segmentation without leakage.
seedPoint	The seed point index for the fine segmentation.
discardLeafSegmentation	True if the last preview ended with leakage in the first step.

The documentation for this class was generated from the following file:

itkConnectedAdaptiveThresholdImageFilter.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Detailed Description

template<class TInputImage, class TOutputImage> class itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >

Member Typedef Documentation

◆ ConstPointer

◆ IndexType

◆ InputImageType

◆ OutputImagePointer

◆ OutputImageType

◆ PixelType

◆ Pointer

◆ Self

◆ Superclass

Constructor & Destructor Documentation

◆ ConnectedAdaptiveThresholdImageFilter()

◆ ~ConnectedAdaptiveThresholdImageFilter()

Member Function Documentation

◆ AdjustIteratorMask()

◆ Clone()

◆ CorrectSeedPointPosition()

◆ CropMask()

◆ GenerateData()

◆ GetClassName()

◆ GetLeakagePoint()

◆ GetResultImage()

◆ GetSeedpointValue()

◆ New()

◆ SetFineDetectionMode()

◆ SetGrowingDirectionIsUpwards()

◆ SetParameterForFineSegmentation()

template<class TInputImage, class TOutputImage>
class itk::ConnectedAdaptiveThresholdImageFilter< TInputImage, TOutputImage >