mitkROIBasedParameterFitImageGeneratorTest.cpp

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/*============================================================================

The Medical Imaging Interaction Toolkit (MITK)

Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.

Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.

============================================================================*/

#include <iostream>

#include "itkImageRegionIterator.h"

#include "mitkTestingMacros.h"
#include "mitkImage.h"
#include "mitkImagePixelReadAccessor.h"

#include "mitkROIBasedParameterFitImageGenerator.h"
#include "mitkLinearModelParameterizer.h"

#include "mitkLevenbergMarquardtModelFitFunctor.h"

#include "mitkTestDynamicImageGenerator.h"

int mitkROIBasedParameterFitImageGeneratorTest(int  /*argc*/, char*[] /*argv[]*/)
{
  // always start with this!
  MITK_TEST_BEGIN("mitkROIBasedParameterFitImageGenerator")

    //Prepare test artifacts and helper

    itk::Index<3> testIndex1;
  testIndex1[0] =   0;
  testIndex1[1] =   0;
  testIndex1[2] =   0;

  itk::Index<3> testIndex2;
  testIndex2[0] =   2;
  testIndex2[1] =   0;
  testIndex2[2] =   1;

  itk::Index<3> testIndex3;
  testIndex3[0] =   1;
  testIndex3[1] =   1;
  testIndex3[2] =   2;

  itk::Index<3> testIndex4;
  testIndex4[0] =   2;
  testIndex4[1] =   2;
  testIndex4[2] =   0;

  itk::Index<3> testIndex5;
  testIndex5[0] =   1;
  testIndex5[1] =   1;
  testIndex5[2] =   1;

  itk::Index<3> testIndex6;
  testIndex6[0] =   2;
  testIndex6[1] =   1;
  testIndex6[2] =   1;


  mitk::Image::Pointer maskImage = mitk::GenerateTestMaskMITK();

  mitk::ROIBasedParameterFitImageGenerator::TimeGridType timeGrid;
  timeGrid.SetSize(5);
  timeGrid[0] = 0;
  timeGrid[1] = 1;
  timeGrid[2] = 2;
  timeGrid[3] = 3;
  timeGrid[4] = 4;

  mitk::ROIBasedParameterFitImageGenerator::SignalType signal;
  signal.SetSize(5);
  signal[0] = 3;
  signal[1] = 5;
  signal[2] = 7;
  signal[3] = 9;
  signal[4] = 11;

  mitk::LinearModel::Pointer model = mitk::LinearModel::New();
  mitk::LevenbergMarquardtModelFitFunctor::Pointer testFunctor = mitk::LevenbergMarquardtModelFitFunctor::New();

  //Test default usage of filter
  mitk::ROIBasedParameterFitImageGenerator::Pointer generator = mitk::ROIBasedParameterFitImageGenerator::New();
  mitk::LinearModelParameterizer::Pointer parameterizer = mitk::LinearModelParameterizer::New();

  generator->SetModelParameterizer(parameterizer);
  generator->SetFitFunctor(testFunctor);
  generator->SetMask(maskImage);
  generator->SetSignal(signal);
  generator->SetTimeGrid(timeGrid);

  generator->Generate();

  mitk::ROIBasedParameterFitImageGenerator::ParameterImageMapType resultImages = generator->GetParameterImages();
  mitk::ROIBasedParameterFitImageGenerator::ParameterImageMapType derivedResultImages = generator->GetDerivedParameterImages();

  CPPUNIT_ASSERT_MESSAGE("Check number of parameter images", 2 == resultImages.size());
  MITK_TEST_CONDITION(resultImages.find("slope") != resultImages.end(),"Check if \"slope\" parameter image exists.");
  MITK_TEST_CONDITION(resultImages.find("offset") != resultImages.end(),"Check if \"offset\" parameter image exists.");
  CPPUNIT_ASSERT_MESSAGE("Check number of derived parameter images", 1 == derivedResultImages.size());
  MITK_TEST_CONDITION(derivedResultImages.find("x-intercept") != derivedResultImages.end(),"Check if \"x-intercept\" derived parameter image exists.");

  mitk::ImagePixelReadAccessor<mitk::ScalarType,3> slopeAccessor2(resultImages["slope"]);
  mitk::ImagePixelReadAccessor<mitk::ScalarType,3> offsetAccessor2(resultImages["offset"]);

  double testValue = slopeAccessor2.GetPixelByIndex(testIndex1);
  MITK_TEST_CONDITION_REQUIRED(mitk::Equal(2,testValue, 1e-5, true)==true, "Check param #1 (slope) at index #1");
  testValue = slopeAccessor2.GetPixelByIndex(testIndex2);
  MITK_TEST_CONDITION_REQUIRED(mitk::Equal(2,testValue, 1e-4, true)==true, "Check param #1 (slope) at index #2");
  testValue = slopeAccessor2.GetPixelByIndex(testIndex3);
  MITK_TEST_CONDITION_REQUIRED(mitk::Equal(0,testValue, 1e-5, true)==true, "Check param #1 (slope) at index #3");
  testValue = slopeAccessor2.GetPixelByIndex(testIndex4);
  MITK_TEST_CONDITION_REQUIRED(mitk::Equal(2,testValue, 1e-4, true)==true, "Check param #1 (slope) at index #4");
  testValue = slopeAccessor2.GetPixelByIndex(testIndex5);
  MITK_TEST_CONDITION_REQUIRED(mitk::Equal(2,testValue, 1e-4, true)==true, "Check param #1 (slope) at index #5");
  testValue = slopeAccessor2.GetPixelByIndex(testIndex6);
  MITK_TEST_CONDITION_REQUIRED(mitk::Equal(0,testValue, 1e-5, true)==true, "Check param #1 (slope) at index #6");

  testValue = offsetAccessor2.GetPixelByIndex(testIndex1);
  MITK_TEST_CONDITION_REQUIRED(mitk::Equal(3,testValue, 1e-5, true)==true, "Check param #2 (offset) at index #1");
  testValue = offsetAccessor2.GetPixelByIndex(testIndex2);
  MITK_TEST_CONDITION_REQUIRED(mitk::Equal(3,testValue, 1e-5, true)==true, "Check param #2 (offset) at index #2");
  testValue = offsetAccessor2.GetPixelByIndex(testIndex3);
  MITK_TEST_CONDITION_REQUIRED(mitk::Equal(0,testValue, 1e-5, true)==true, "Check param #2 (offset) at index #3");
  testValue = offsetAccessor2.GetPixelByIndex(testIndex4);
  MITK_TEST_CONDITION_REQUIRED(mitk::Equal(3,testValue, 1e-5, true)==true, "Check param #2 (offset) at index #4");
  testValue = offsetAccessor2.GetPixelByIndex(testIndex5);
  MITK_TEST_CONDITION_REQUIRED(mitk::Equal(3,testValue, 1e-5, true)==true, "Check param #2 (offset) at index #5");
  testValue = offsetAccessor2.GetPixelByIndex(testIndex6);
  MITK_TEST_CONDITION_REQUIRED(mitk::Equal(0,testValue, 1e-5, true)==true, "Check param #2 (offset) at index #6");

  MITK_TEST_END()
}