mitkPAIOUtil.h

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/*============================================================================

The Medical Imaging Interaction Toolkit (MITK)

Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.

Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.

============================================================================*/

#ifndef MITKPHOTOACOUSTICIO_H
#define MITKPHOTOACOUSTICIO_H

#include "MitkPhotoacousticsLibExports.h"

#include <map>
#include <mutex>
#include <thread>

//Includes for smart pointer usage
#include "mitkCommon.h"
#include "itkLightObject.h"

#include "mitkPAVolume.h"
#include <mitkPAInSilicoTissueVolume.h>
#include <mitkPAFluenceYOffsetPair.h>

namespace mitk {
  namespace pa {
    class MITKPHOTOACOUSTICSLIB_EXPORT IOUtil final
    {
    public:

      struct Position
      {
        int x, z;

        bool operator <(const Position& rhs) const
        {
          return (x < rhs.x || ((x == rhs.x) && z < rhs.z));
        }
      };

      static std::map<Position, Volume::Pointer> LoadFluenceContributionMaps(
        std::string foldername, double blur, int* progress, bool log10 = false);

      static Volume::Pointer LoadNrrd(std::string filename, double sigma = 0);

      static int GetNumberOfNrrdFilesInDirectory(std::string directory);

      static std::vector<std::string> GetListOfAllNrrdFilesInDirectory(
        std::string directory, bool keepFileFormat = false);

      static bool DoesFileHaveEnding(std::string const &fullString, std::string const &ending);

      static std::vector<std::string> GetAllChildfoldersFromFolder(std::string folderPath);

      static InSilicoTissueVolume::Pointer LoadInSilicoTissueVolumeFromNrrdFile(std::string filePath);

      static FluenceYOffsetPair::Pointer LoadFluenceSimulation(std::string fluenceSimulation);

    private:

      IOUtil();
      ~IOUtil();
    };
  }
}
#endif // MITKPHOTOACOUSTICIO_H