mitkNavigationDataReferenceTransformFilter.h

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/*============================================================================

The Medical Imaging Interaction Toolkit (MITK)

Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.

Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.

============================================================================*/

#ifndef MITKNavigationDataReferenceTransformFilter_H_HEADER_INCLUDED_
#define MITKNavigationDataReferenceTransformFilter_H_HEADER_INCLUDED_

#include <mitkNavigationDataLandmarkTransformFilter.h>

#include <itkQuaternionRigidTransform.h>
#include <mitkPointSet.h>



namespace mitk {

  class MITKIGT_EXPORT NavigationDataReferenceTransformFilter : public NavigationDataLandmarkTransformFilter
  {
  public:
    mitkClassMacro(NavigationDataReferenceTransformFilter, NavigationDataToNavigationDataFilter);
    itkFactorylessNewMacro(Self);
    itkCloneMacro(Self);

    typedef itk::QuaternionRigidTransform<double> QuaternionTransformType; 

    void SetSourceNavigationDatas(const std::vector<mitk::NavigationData::Pointer>& sourceNavigationDatas);

    void SetTargetNavigationDatas(const std::vector<mitk::NavigationData::Pointer>& sourceNavigationDatas);

    void ReinitFilter();

    const mitk::PointSet::Pointer GetSourceLandmarks();
    const mitk::PointSet::Pointer GetTargetLandmarks();

    bool InitializeTransform();


  protected:

    NavigationDataReferenceTransformFilter();
    ~NavigationDataReferenceTransformFilter() override;

    QuaternionTransformType::Pointer m_QuaternionTransform; 

    mitk::PointSet::Pointer CreateLandmarkPointsForSingleNavigationData(mitk::PointSet::Pointer landmarkContainer, const std::vector<mitk::NavigationData::Pointer>& navigationDatas);

    mitk::PointSet::Pointer m_SourceLandmarksFromNavigationDatas; 
    mitk::PointSet::Pointer m_TargetLandmarksFromNavigationDatas; 


  };
} // namespace mitk
#endif /* MITKNavigationDataReferenceTransformFilter_H_HEADER_INCLUDED_ */