itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage > Class Template Reference

Extension of the itkLabelStatisticsImageFilter that also calculates the Skewness,Kurtosis,Entropy,Uniformity. More...

#include <mitkExtendedLabelStatisticsImageFilter.h>

Inheritance diagram for itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >:

Collaboration diagram for itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >:

Classes
class	LabelStatistics
	Statistics stored per label. More...

Public Types
typedef ExtendedLabelStatisticsImageFilter	Self
typedef LabelStatisticsImageFilter< TInputImage, TLabelImage >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::LabelPixelType	LabelPixelType
typedef Superclass::RealType	RealType
typedef Superclass::PixelType	PixelType
typedef Superclass::MapIterator	MapIterator
typedef Superclass::BoundingBoxType	BoundingBoxType
typedef Superclass::RegionType	RegionType
typedef itk::Statistics::Histogram< double >	HistogramType
typedef itksys::hash_map< LabelPixelType, LabelStatistics >	MapType
typedef itksys::hash_map< LabelPixelType, LabelStatistics >::const_iterator	StatisticsMapConstIterator
typedef itksys::hash_map< LabelPixelType, LabelStatistics >::iterator	StatisticsMapIterator
typedef IdentifierType	MapSizeType
typedef std::vector< LabelPixelType >	ValidLabelValuesContainerType

Public Member Functions
Pointer	Clone () const
virtual const char *	GetClassName () const
RealType	GetMinimum (LabelPixelType label) const
RealType	GetMaximum (LabelPixelType label) const
RealType	GetMean (LabelPixelType label) const
RealType	GetSigma (LabelPixelType label) const
RealType	GetVariance (LabelPixelType label) const
BoundingBoxType	GetBoundingBox (LabelPixelType label) const
RegionType	GetRegion (LabelPixelType label) const
RealType	GetSum (LabelPixelType label) const
MapSizeType	GetCount (LabelPixelType label) const
HistogramType::Pointer	GetHistogram (LabelPixelType label) const
RealType	GetSkewness (LabelPixelType label) const
RealType	GetKurtosis (LabelPixelType label) const
RealType	GetUniformity (LabelPixelType label) const
RealType	GetMedian (LabelPixelType label) const
RealType	GetEntropy (LabelPixelType label) const
RealType	GetMPP (LabelPixelType label) const
RealType	GetUPP (LabelPixelType label) const
bool	GetMaskingNonEmpty () const
std::list< int >	GetRelevantLabels () const
void	SetHistogramParameters (const int numBins, RealType lowerBound, RealType upperBound)
void	SetHistogramParametersForLabels (std::map< LabelPixelType, unsigned int > numBins, std::map< LabelPixelType, PixelType > lowerBound, std::map< LabelPixelType, PixelType > upperBound)

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	ExtendedLabelStatisticsImageFilter ()
	~ExtendedLabelStatisticsImageFilter () override
void	AfterThreadedGenerateData () override
void	BeforeThreadedGenerateData () override
void	ThreadedGenerateData (const typename TInputImage::RegionType &outputRegionForThread, ThreadIdType threadId) override
bool	HasLabel (LabelPixelType label) const

Detailed Description

template<class TInputImage, class TLabelImage>
class itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >

Extension of the itkLabelStatisticsImageFilter that also calculates the Skewness,Kurtosis,Entropy,Uniformity.

This class inherits from the itkLabelStatisticsImageFilter and uses its results for the calculation of seven additional coefficients: the Skewness, Kurtosis, Uniformity, UPP, MPP, Entropy and Median

Definition at line 30 of file mitkExtendedLabelStatisticsImageFilter.h.

Member Typedef Documentation

BoundingBoxType

template<class TInputImage , class TLabelImage >

typedef Superclass::BoundingBoxType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::BoundingBoxType

Definition at line 42 of file mitkExtendedLabelStatisticsImageFilter.h.

ConstPointer

template<class TInputImage , class TLabelImage >

typedef SmartPointer< const Self > itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::ConstPointer

Definition at line 37 of file mitkExtendedLabelStatisticsImageFilter.h.

HistogramType

template<class TInputImage , class TLabelImage >

typedef itk::Statistics::Histogram<double> itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::HistogramType

Definition at line 44 of file mitkExtendedLabelStatisticsImageFilter.h.

LabelPixelType

template<class TInputImage , class TLabelImage >

typedef Superclass::LabelPixelType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::LabelPixelType

Definition at line 38 of file mitkExtendedLabelStatisticsImageFilter.h.

MapIterator

template<class TInputImage , class TLabelImage >

typedef Superclass::MapIterator itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::MapIterator

Definition at line 41 of file mitkExtendedLabelStatisticsImageFilter.h.

MapSizeType

template<class TInputImage , class TLabelImage >

typedef IdentifierType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::MapSizeType

Definition at line 234 of file mitkExtendedLabelStatisticsImageFilter.h.

MapType

template<class TInputImage , class TLabelImage >

typedef itksys::hash_map< LabelPixelType, LabelStatistics > itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::MapType

Type of the map used to store data per label

Definition at line 231 of file mitkExtendedLabelStatisticsImageFilter.h.

PixelType

template<class TInputImage , class TLabelImage >

typedef Superclass::PixelType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::PixelType

Definition at line 40 of file mitkExtendedLabelStatisticsImageFilter.h.

Pointer

template<class TInputImage , class TLabelImage >

typedef SmartPointer< Self > itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::Pointer

Definition at line 36 of file mitkExtendedLabelStatisticsImageFilter.h.

RealType

template<class TInputImage , class TLabelImage >

typedef Superclass::RealType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::RealType

Definition at line 39 of file mitkExtendedLabelStatisticsImageFilter.h.

RegionType

template<class TInputImage , class TLabelImage >

typedef Superclass::RegionType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::RegionType

Definition at line 43 of file mitkExtendedLabelStatisticsImageFilter.h.

Self

template<class TInputImage , class TLabelImage >

typedef ExtendedLabelStatisticsImageFilter itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::Self

Definition at line 34 of file mitkExtendedLabelStatisticsImageFilter.h.

StatisticsMapConstIterator

template<class TInputImage , class TLabelImage >

typedef itksys::hash_map< LabelPixelType, LabelStatistics >::const_iterator itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::StatisticsMapConstIterator

Definition at line 232 of file mitkExtendedLabelStatisticsImageFilter.h.

StatisticsMapIterator

template<class TInputImage , class TLabelImage >

typedef itksys::hash_map< LabelPixelType, LabelStatistics >::iterator itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::StatisticsMapIterator

Definition at line 233 of file mitkExtendedLabelStatisticsImageFilter.h.

Superclass

template<class TInputImage , class TLabelImage >

typedef LabelStatisticsImageFilter< TInputImage, TLabelImage > itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::Superclass

Definition at line 35 of file mitkExtendedLabelStatisticsImageFilter.h.

ValidLabelValuesContainerType

template<class TInputImage , class TLabelImage >

typedef std::vector<LabelPixelType> itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::ValidLabelValuesContainerType

Type of the container used to store valid label values

Definition at line 237 of file mitkExtendedLabelStatisticsImageFilter.h.

Constructor & Destructor Documentation

ExtendedLabelStatisticsImageFilter()

template<class TInputImage , class TLabelImage >

itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::ExtendedLabelStatisticsImageFilter ( )

inlineprotected

Definition at line 292 of file mitkExtendedLabelStatisticsImageFilter.h.

~ExtendedLabelStatisticsImageFilter()

template<class TInputImage , class TLabelImage >

itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::~ExtendedLabelStatisticsImageFilter ( )

inlineoverrideprotected

Definition at line 301 of file mitkExtendedLabelStatisticsImageFilter.h.

References itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::AfterThreadedGenerateData(), itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::BeforeThreadedGenerateData(), and itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::ThreadedGenerateData().

Member Function Documentation

AfterThreadedGenerateData()

template<class TInputImage , class TLabelImage >

void itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::AfterThreadedGenerateData ( )

overrideprotected

Referenced by itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::~ExtendedLabelStatisticsImageFilter().

BeforeThreadedGenerateData()

template<class TInputImage , class TLabelImage >

void itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::BeforeThreadedGenerateData ( )

overrideprotected

Initialize some accumulators before the threads run.

Referenced by itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::~ExtendedLabelStatisticsImageFilter().

Clone()

template<class TInputImage , class TLabelImage >

Pointer itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::Clone

(

)

const

GetBoundingBox()

template<class TInputImage , class TLabelImage >

BoundingBoxType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::GetBoundingBox

(

LabelPixelType

label

)

const

Return the computed bounding box for a label.

GetClassName()

template<class TInputImage , class TLabelImage >

virtual const char* itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::GetClassName ( ) const

virtual

GetCount()

template<class TInputImage , class TLabelImage >

MapSizeType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::GetCount

(

LabelPixelType

label

)

const

Return the number of pixels for a label.

GetEntropy()

template<class TInputImage , class TLabelImage >

RealType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::GetEntropy

(

LabelPixelType

label

)

const

GetHistogram()

template<class TInputImage , class TLabelImage >

HistogramType::Pointer itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::GetHistogram

(

LabelPixelType

label

)

const

Return the histogram for a label

GetKurtosis()

template<class TInputImage , class TLabelImage >

RealType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::GetKurtosis

(

LabelPixelType

label

)

const

GetMaskingNonEmpty()

template<class TInputImage , class TLabelImage >

bool itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::GetMaskingNonEmpty

(

)

const

GetMaximum()

template<class TInputImage , class TLabelImage >

RealType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::GetMaximum

(

LabelPixelType

label

)

const

Return the computed Maximum for a label.

GetMean()

template<class TInputImage , class TLabelImage >

RealType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::GetMean

(

LabelPixelType

label

)

const

Return the computed Mean for a label.

GetMedian()

template<class TInputImage , class TLabelImage >

RealType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::GetMedian

(

LabelPixelType

label

)

const

GetMinimum()

template<class TInputImage , class TLabelImage >

RealType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::GetMinimum

(

LabelPixelType

label

)

const

Return the computed Minimum for a label.

GetMPP()

template<class TInputImage , class TLabelImage >

RealType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::GetMPP

(

LabelPixelType

label

)

const

GetRegion()

template<class TInputImage , class TLabelImage >

RegionType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::GetRegion

(

LabelPixelType

label

)

const

Return the computed region.

GetRelevantLabels()

template<class TInputImage , class TLabelImage >

std::list<int> itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::GetRelevantLabels

(

)

const

GetSigma()

template<class TInputImage , class TLabelImage >

RealType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::GetSigma

(

LabelPixelType

label

)

const

Return the computed Standard Deviation for a label.

GetSkewness()

template<class TInputImage , class TLabelImage >

RealType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::GetSkewness

(

LabelPixelType

label

)

const

GetSum()

template<class TInputImage , class TLabelImage >

RealType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::GetSum

(

LabelPixelType

label

)

const

Return the compute Sum for a label.

GetUniformity()

template<class TInputImage , class TLabelImage >

RealType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::GetUniformity

(

LabelPixelType

label

)

const

GetUPP()

template<class TInputImage , class TLabelImage >

RealType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::GetUPP

(

LabelPixelType

label

)

const

GetVariance()

template<class TInputImage , class TLabelImage >

RealType itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::GetVariance

(

LabelPixelType

label

)

const

Return the computed Variance for a label.

HasLabel()

template<class TInputImage , class TLabelImage >

bool itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::HasLabel ( LabelPixelType  label ) const

inlineprotected

Does the specified label exist? Can only be called after a call a call to Update().

Definition at line 315 of file mitkExtendedLabelStatisticsImageFilter.h.

New()

template<class TInputImage , class TLabelImage >

static Pointer itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::New ( )

static

SetHistogramParameters()

template<class TInputImage , class TLabelImage >

void itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::SetHistogramParameters	(	const int	numBins,
		RealType	lowerBound,
		RealType	upperBound
	)

specify global Histogram parameters. If the histogram parameters are set with this function, the same min and max value are used for all histograms.

SetHistogramParametersForLabels()

template<class TInputImage , class TLabelImage >

void itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::SetHistogramParametersForLabels	(	std::map< LabelPixelType, unsigned int >	numBins,
		std::map< LabelPixelType, PixelType >	lowerBound,
		std::map< LabelPixelType, PixelType >	upperBound
	)

specify Histogram parameters for each label individually. Labels in the label image that are not represented in the std::maps here will receive global parameters (if available)

ThreadedGenerateData()

template<class TInputImage , class TLabelImage >

void itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::ThreadedGenerateData ( const typename TInputImage::RegionType &  outputRegionForThread, ThreadIdType  threadId  )

overrideprotected

Multi-thread version GenerateData.

Referenced by itk::ExtendedLabelStatisticsImageFilter< TInputImage, TLabelImage >::~ExtendedLabelStatisticsImageFilter().

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The documentation for this class was generated from the following file:

• mitkExtendedLabelStatisticsImageFilter.h