mitk::IntensityQuantifier Class Reference

#include <mitkIntensityQuantifier.h>

Inheritance diagram for mitk::IntensityQuantifier:

Collaboration diagram for mitk::IntensityQuantifier:

Public Member Functions
	mitkClassMacro (IntensityQuantifier, BaseData)
Pointer	Clone () const
	IntensityQuantifier ()
void	InitializeByMinimumMaximum (double minimum, double maximum, unsigned int bins)
void	InitializeByBinsizeAndBins (double minimum, unsigned int bins, double binsize)
void	InitializeByBinsizeAndMaximum (double minimum, double maximum, double binsize)
void	InitializeByImage (const Image *image, unsigned int bins)
void	InitializeByImageAndMaximum (const Image *image, double maximum, unsigned int bins)
void	InitializeByImageAndMinimum (const Image *image, double minimum, unsigned int bins)
void	InitializeByImageRegion (const Image *image, const Image *mask, unsigned int bins)
void	InitializeByImageRegionAndMinimum (const Image *image, const Image *mask, double minimum, unsigned int bins)
void	InitializeByImageRegionAndMaximum (const Image *image, const Image *mask, double maximum, unsigned int bins)
void	InitializeByImageAndBinsize (const Image *image, double binsize)
void	InitializeByImageAndBinsizeAndMinimum (const Image *image, double minimum, double binsize)
void	InitializeByImageAndBinsizeAndMaximum (const Image *image, double maximum, double binsize)
void	InitializeByImageRegionAndBinsize (const Image *image, const Image *mask, double binsize)
void	InitializeByImageRegionAndBinsizeAndMinimum (const Image *image, const Image *mask, double minimum, double binsize)
void	InitializeByImageRegionAndBinsizeAndMaximum (const Image *image, const Image *mask, double maximum, double binsize)
unsigned int	IntensityToIndex (double intensity)
double	IndexToMinimumIntensity (unsigned int index)
double	IndexToMeanIntensity (unsigned int index)
double	IndexToMaximumIntensity (unsigned int index)
virtual bool	GetInitialized () const
virtual unsigned int	GetBins () const
virtual double	GetBinsize () const
virtual double	GetMinimum () const
virtual double	GetMaximum () const
void	SetRequestedRegionToLargestPossibleRegion () override
	Set the RequestedRegion to the LargestPossibleRegion. More...
bool	RequestedRegionIsOutsideOfTheBufferedRegion () override
	Determine whether the RequestedRegion is outside of the BufferedRegion. More...
bool	VerifyRequestedRegion () override
	Verify that the RequestedRegion is within the LargestPossibleRegion. More...
void	SetRequestedRegion (const itk::DataObject *) override
	Set the requested region from this data object to match the requested region of the data object passed in as a parameter. More...
bool	IsEmpty () const override
	Check whether object contains data (at least at one point in time), e.g., a set of points may be empty. More...
Public Member Functions inherited from mitk::BaseData
virtual std::vector< std::string >	GetClassHierarchy () const
virtual const char *	GetClassName () const
BaseProperty::ConstPointer	GetConstProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=true) const override
	Get property by its key. More...
std::vector< std::string >	GetPropertyKeys (const std::string &contextName="", bool includeDefaultContext=false) const override
	Query keys of existing properties. More...
std::vector< std::string >	GetPropertyContextNames () const override
	Query names of existing contexts. More...
BaseProperty *	GetNonConstProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=true) override
	Get property by its key. More...
void	SetProperty (const std::string &propertyKey, BaseProperty *property, const std::string &contextName="", bool fallBackOnDefaultContext=false) override
	Add new or change existent property. More...
void	RemoveProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=false) override
	Removes a property. If the property does not exist, nothing will be done. More...
const mitk::TimeGeometry *	GetTimeGeometry () const
	Return the TimeGeometry of the data as const pointer. More...
mitk::TimeGeometry *	GetTimeGeometry ()
	Return the TimeGeometry of the data as pointer. More...
const mitk::TimeGeometry *	GetUpdatedTimeGeometry ()
	Return the TimeGeometry of the data. More...
virtual void	Expand (unsigned int timeSteps)
	Expands the TimeGeometry to a number of TimeSteps. More...
const mitk::BaseGeometry *	GetUpdatedGeometry (int t=0)
	Return the BaseGeometry of the data at time t. More...
mitk::BaseGeometry *	GetGeometry (int t=0) const
	Return the geometry, which is a TimeGeometry, of the data as non-const pointer. More...
void	UpdateOutputInformation () override
	Update the information for this BaseData (the geometry in particular) so that it can be used as an output of a BaseProcess. More...
void	CopyInformation (const itk::DataObject *data) override
	Copy information from the specified data set. More...
virtual bool	IsInitialized () const
	Check whether the data has been initialized, i.e., at least the Geometry and other header data has been set. More...
virtual void	Clear ()
	Calls ClearData() and InitializeEmpty();. More...
virtual bool	IsEmptyTimeStep (unsigned int t) const
	Check whether object contains data (at a specified time), e.g., a set of points may be empty. More...
void	ExecuteOperation (Operation *operation) override
	overwrite if the Data can be called by an Interactor (StateMachine). More...
virtual void	SetGeometry (BaseGeometry *aGeometry3D)
	Set the BaseGeometry of the data, which will be referenced (not copied!). Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry which saves the given BaseGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...
virtual void	SetTimeGeometry (TimeGeometry *geometry)
	Set the TimeGeometry of the data, which will be referenced (not copied!). More...
virtual void	SetClonedGeometry (const BaseGeometry *aGeometry3D)
	Set a clone of the provided Geometry as Geometry of the data. Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...
virtual void	SetClonedTimeGeometry (const TimeGeometry *geometry)
	Set a clone of the provided TimeGeometry as TimeGeometry of the data. More...
virtual void	SetClonedGeometry (const BaseGeometry *aGeometry3D, unsigned int time)
	Set a clone of the provided geometry as BaseGeometry of a given time step. More...
mitk::PropertyList::Pointer	GetPropertyList () const
	Get the data's property list. More...
void	SetPropertyList (PropertyList *propertyList)
	Set the data's property list. More...
mitk::BaseProperty::Pointer	GetProperty (const char *propertyKey) const
	Get the property (instance of BaseProperty) with key propertyKey from the PropertyList, and set it to this, respectively;. More...
void	SetProperty (const char *propertyKey, BaseProperty *property)
virtual void	SetOrigin (const Point3D &origin)
	Convenience method for setting the origin of the BaseGeometry instances of all time steps. More...
itk::SmartPointer< mitk::BaseDataSource >	GetSource () const
	Get the process object that generated this data object. More...
unsigned int	GetTimeSteps () const
	Get the number of time steps from the TimeGeometry As the base data has not a data vector given by itself, the number of time steps is defined over the time sliced geometry. In sub classes, a better implementation could be over the length of the data vector. More...
itk::ModifiedTimeType	GetMTime () const override
	Get the modified time of the last change of the contents this data object or its geometry. More...
void	Graft (const DataObject *) override
Public Member Functions inherited from mitk::OperationActor
	itkTypeMacroNoParent (OperationActor) virtual ~OperationActor()
Public Member Functions inherited from mitk::Identifiable
	Identifiable ()
	Identifiable (const UIDType &uid)
	Identifiable (const Identifiable &)=delete
	Identifiable (Identifiable &&) noexcept
virtual	~Identifiable ()
Identifiable &	operator= (const Identifiable &)=delete
Identifiable &	operator= (Identifiable &&other) noexcept
virtual UIDType	GetUID () const
	Get unique ID of an object. More...
Public Member Functions inherited from mitk::IPropertyOwner
	~IPropertyOwner () override
Public Member Functions inherited from mitk::IPropertyProvider
virtual	~IPropertyProvider ()

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from mitk::BaseData
static const char *	GetStaticNameOfClass ()

Additional Inherited Members
Public Types inherited from mitk::BaseData
typedef BaseData	Self
typedef itk::DataObject	Superclass
typedef itk::SmartPointer< Self >	Pointer
typedef itk::SmartPointer< const Self >	ConstPointer
Public Types inherited from mitk::Identifiable
using	UIDType = std::string
Protected Member Functions inherited from mitk::BaseData
	BaseData ()
	BaseData (const BaseData &other)
	~BaseData () override
virtual void	InitializeTimeGeometry (unsigned int timeSteps=1)
	Initialize the TimeGeometry for a number of time steps. The TimeGeometry is initialized empty and evenly timed. In many cases it will be necessary to overwrite this in sub-classes. More...
virtual void	ClearData ()
	reset to non-initialized state, release memory More...
virtual void	InitializeEmpty ()
	Pure virtual; Must be used in subclasses to get a data object to a valid state. Should at least create one empty object and call Superclass::InitializeTimeGeometry() to ensure an existing valid geometry. More...
void	PrintSelf (std::ostream &os, itk::Indent indent) const override
Protected Member Functions inherited from mitk::Identifiable
virtual void	SetUID (const UIDType &uid)
Protected Attributes inherited from mitk::BaseData
bool	m_LastRequestedRegionWasOutsideOfTheBufferedRegion
unsigned int	m_SourceOutputIndexDuplicate
bool	m_Initialized

Detailed Description

Definition at line 24 of file mitkIntensityQuantifier.h.

Constructor & Destructor Documentation

IntensityQuantifier()

mitk::IntensityQuantifier::IntensityQuantifier

(

)

Member Function Documentation

Clone()

Pointer mitk::IntensityQuantifier::Clone

(

)

const

GetBins()

virtual unsigned int mitk::IntensityQuantifier::GetBins ( ) const

virtual

GetBinsize()

virtual double mitk::IntensityQuantifier::GetBinsize ( ) const

virtual

GetInitialized()

virtual bool mitk::IntensityQuantifier::GetInitialized ( ) const

virtual

GetMaximum()

virtual double mitk::IntensityQuantifier::GetMaximum ( ) const

virtual

GetMinimum()

virtual double mitk::IntensityQuantifier::GetMinimum ( ) const

virtual

IndexToMaximumIntensity()

double mitk::IntensityQuantifier::IndexToMaximumIntensity

(

unsigned int

index

)

IndexToMeanIntensity()

double mitk::IntensityQuantifier::IndexToMeanIntensity

(

unsigned int

index

)

IndexToMinimumIntensity()

double mitk::IntensityQuantifier::IndexToMinimumIntensity

(

unsigned int

index

)

InitializeByBinsizeAndBins()

void mitk::IntensityQuantifier::InitializeByBinsizeAndBins	(	double	minimum,
		unsigned int	bins,
		double	binsize
	)

InitializeByBinsizeAndMaximum()

void mitk::IntensityQuantifier::InitializeByBinsizeAndMaximum	(	double	minimum,
		double	maximum,
		double	binsize
	)

InitializeByImage()

void mitk::IntensityQuantifier::InitializeByImage	(	const Image *	image,
		unsigned int	bins
	)

InitializeByImageAndBinsize()

void mitk::IntensityQuantifier::InitializeByImageAndBinsize	(	const Image *	image,
		double	binsize
	)

InitializeByImageAndBinsizeAndMaximum()

void mitk::IntensityQuantifier::InitializeByImageAndBinsizeAndMaximum	(	const Image *	image,
		double	maximum,
		double	binsize
	)

InitializeByImageAndBinsizeAndMinimum()

void mitk::IntensityQuantifier::InitializeByImageAndBinsizeAndMinimum	(	const Image *	image,
		double	minimum,
		double	binsize
	)

InitializeByImageAndMaximum()

void mitk::IntensityQuantifier::InitializeByImageAndMaximum	(	const Image *	image,
		double	maximum,
		unsigned int	bins
	)

InitializeByImageAndMinimum()

void mitk::IntensityQuantifier::InitializeByImageAndMinimum	(	const Image *	image,
		double	minimum,
		unsigned int	bins
	)

InitializeByImageRegion()

void mitk::IntensityQuantifier::InitializeByImageRegion	(	const Image *	image,
		const Image *	mask,
		unsigned int	bins
	)

InitializeByImageRegionAndBinsize()

void mitk::IntensityQuantifier::InitializeByImageRegionAndBinsize	(	const Image *	image,
		const Image *	mask,
		double	binsize
	)

InitializeByImageRegionAndBinsizeAndMaximum()

void mitk::IntensityQuantifier::InitializeByImageRegionAndBinsizeAndMaximum	(	const Image *	image,
		const Image *	mask,
		double	maximum,
		double	binsize
	)

InitializeByImageRegionAndBinsizeAndMinimum()

void mitk::IntensityQuantifier::InitializeByImageRegionAndBinsizeAndMinimum	(	const Image *	image,
		const Image *	mask,
		double	minimum,
		double	binsize
	)

InitializeByImageRegionAndMaximum()

void mitk::IntensityQuantifier::InitializeByImageRegionAndMaximum	(	const Image *	image,
		const Image *	mask,
		double	maximum,
		unsigned int	bins
	)

InitializeByImageRegionAndMinimum()

void mitk::IntensityQuantifier::InitializeByImageRegionAndMinimum	(	const Image *	image,
		const Image *	mask,
		double	minimum,
		unsigned int	bins
	)

InitializeByMinimumMaximum()

void mitk::IntensityQuantifier::InitializeByMinimumMaximum	(	double	minimum,
		double	maximum,
		unsigned int	bins
	)

IntensityToIndex()

unsigned int mitk::IntensityQuantifier::IntensityToIndex

(

double

intensity

)

IsEmpty()

bool mitk::IntensityQuantifier::IsEmpty ( ) const

inlineoverridevirtual

Check whether object contains data (at least at one point in time), e.g., a set of points may be empty.

Warning

Returns IsInitialized()==false by default for compatibility reasons. Override in sub-classes that support distinction between empty/non-empty state.

Reimplemented from mitk::BaseData.

Definition at line 70 of file mitkIntensityQuantifier.h.

mitkClassMacro()

mitk::IntensityQuantifier::mitkClassMacro	(	IntensityQuantifier	,
		BaseData
	)

New()

static Pointer mitk::IntensityQuantifier::New ( )

static

RequestedRegionIsOutsideOfTheBufferedRegion()

bool mitk::IntensityQuantifier::RequestedRegionIsOutsideOfTheBufferedRegion ( )

inlineoverridevirtual

Determine whether the RequestedRegion is outside of the BufferedRegion.

This method returns true if the RequestedRegion is outside the BufferedRegion (true if at least one pixel is outside). This is used by the pipeline mechanism to determine whether a filter needs to re-execute in order to satisfy the current request. If the current RequestedRegion is already inside the BufferedRegion from the previous execution (and the current filter is up to date), then a given filter does not need to re-execute

Implements mitk::BaseData.

Definition at line 65 of file mitkIntensityQuantifier.h.

SetRequestedRegion()

void mitk::IntensityQuantifier::SetRequestedRegion ( const itk::DataObject *  data )

inlineoverridevirtual

Set the requested region from this data object to match the requested region of the data object passed in as a parameter.

This method is implemented in the concrete subclasses of BaseData.

Implements mitk::BaseData.

Definition at line 67 of file mitkIntensityQuantifier.h.

SetRequestedRegionToLargestPossibleRegion()

void mitk::IntensityQuantifier::SetRequestedRegionToLargestPossibleRegion ( )

inlineoverridevirtual

Set the RequestedRegion to the LargestPossibleRegion.

This forces a filter to produce all of the output in one execution (i.e. not streaming) on the next call to Update().

Implements mitk::BaseData.

Definition at line 64 of file mitkIntensityQuantifier.h.

VerifyRequestedRegion()

bool mitk::IntensityQuantifier::VerifyRequestedRegion ( )

inlineoverridevirtual

Verify that the RequestedRegion is within the LargestPossibleRegion.

If the RequestedRegion is not within the LargestPossibleRegion, then the filter cannot possibly satisfy the request. This method returns true if the request can be satisfied (even if it will be necessary to process the entire LargestPossibleRegion) and returns false otherwise. This method is used by PropagateRequestedRegion(). PropagateRequestedRegion() throws a InvalidRequestedRegionError exception if the requested region is not within the LargestPossibleRegion.

Implements mitk::BaseData.

Definition at line 66 of file mitkIntensityQuantifier.h.

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The documentation for this class was generated from the following file:

• mitkIntensityQuantifier.h