mitk::ContourTool Class Reference

Simple contour filling tool. More...

#include <mitkContourTool.h>

Inheritance diagram for mitk::ContourTool:

Collaboration diagram for mitk::ContourTool:

Public Member Functions
	mitkClassMacro (ContourTool, FeedbackContourTool)
Public Member Functions inherited from mitk::FeedbackContourTool
	mitkClassMacro (FeedbackContourTool, SegTool2D)
Public Member Functions inherited from mitk::SegTool2D
	mitkClassMacro (SegTool2D, Tool)
void	SetShowMarkerNodes (bool)
void	SetEnable3DInterpolation (bool)
	Enables or disables the 3D interpolation after writing back the 2D segmentation result, and defaults to true. More...
void	Activated () override
	Called when the tool gets activated. More...
void	Deactivated () override
	Called when the tool gets deactivated. More...
virtual void	SetIsTimePointChangeAware (bool _arg)
virtual bool	GetIsTimePointChangeAware ()
virtual void	IsTimePointChangeAwareOn ()
virtual void	IsTimePointChangeAwareOff ()
Public Member Functions inherited from mitk::Tool
	mitkClassMacro (Tool, EventStateMachine)
virtual const char **	GetXPM () const =0
	Returns an icon in the XPM format. More...
virtual std::string	GetIconPath () const
	Returns the path of an icon. More...
virtual us::ModuleResource	GetCursorIconResource () const
	Returns the path of a cursor icon. More...
virtual us::ModuleResource	GetIconResource () const
	Returns the tool button icon of the tool wrapped by a usModuleResource. More...
virtual const char *	GetName () const =0
	Returns the name of this tool. Make it short! More...
virtual const char *	GetGroup () const
	Name of a group. More...
virtual void	InitializeStateMachine ()
virtual itk::Object::Pointer	GetGUI (const std::string &toolkitPrefix, const std::string &toolkitPostfix)
	Interface for GUI creation. More...
virtual NodePredicateBase::ConstPointer	GetReferenceDataPreference () const
virtual NodePredicateBase::ConstPointer	GetWorkingDataPreference () const
DataNode::Pointer	CreateEmptySegmentationNode (const Image *original, const std::string &organName, const mitk::Color &color) const
DataNode::Pointer	CreateSegmentationNode (Image *image, const std::string &organName, const mitk::Color &color) const
virtual bool	CanHandle (const BaseData *referenceData, const BaseData *workingData) const
virtual bool	ConfirmBeforeDeactivation ()
	Method call to invoke a dialog box just before exiting. The method can be reimplemented in the respective tool class with business logic on when there should be a confirmation dialog from the user before the tool exits. More...
Public Member Functions inherited from mitk::EventStateMachine
virtual std::vector< std::string >	GetClassHierarchy () const override
virtual const char *	GetClassName () const
bool	LoadStateMachine (const std::string &filename, const us::Module *module=nullptr)
	Loads XML resource. More...
bool	HandleEvent (InteractionEvent *event, DataNode *dataNode)
void	EnableUndo (bool enable)
	Enables or disabled Undo. More...
void	EnableInteraction (bool enable)
	Enables/disables the state machine. In un-enabled state it won't react to any events. More...
Public Member Functions inherited from mitk::InteractionEventHandler
bool	SetEventConfig (const std::string &filename, const us::Module *module=nullptr)
	Loads a configuration from an XML resource. More...
bool	SetEventConfig (const EventConfig &config)
	Loads a configuration from an EventConfig object. More...
EventConfig	GetEventConfig () const
	Returns the current configuration. More...
bool	AddEventConfig (const std::string &filename, const us::Module *module=nullptr)
	This method extends the configuration. More...
bool	AddEventConfig (const EventConfig &config)
	This method extends the configuration. The configuration from the EventConfig object is loaded and only the ones conflicting are replaced by the new one. This way several configurations can be combined. More...
Public Member Functions inherited from mitk::InteractionEventObserver
	InteractionEventObserver ()
virtual	~InteractionEventObserver ()
void	Disable ()
void	Enable ()
bool	IsEnabled () const

Protected Member Functions
	ContourTool (int paintingPixelValue=1)
	~ContourTool () override
void	Activated () override
	Called when the tool gets activated. More...
void	Deactivated () override
	Called when the tool gets deactivated. More...
virtual void	OnMousePressed (StateMachineAction *, InteractionEvent *interactionEvent)
virtual void	OnMouseMoved (StateMachineAction *, InteractionEvent *interactionEvent)
virtual void	OnMouseReleased (StateMachineAction *, InteractionEvent *interactionEvent)
virtual void	OnInvertLogic (StateMachineAction *, InteractionEvent *interactionEvent)
void	ConnectActionsAndFunctions () override
Protected Member Functions inherited from mitk::FeedbackContourTool
	FeedbackContourTool ()
	FeedbackContourTool (const char *)
	~FeedbackContourTool () override
const ContourModel *	GetFeedbackContour () const
void	InitializeFeedbackContour (bool isClosed)
void	ClearsCurrentFeedbackContour (bool isClosed)
void	UpdateCurrentFeedbackContour (const ContourModel *sourceModel, TimeStepType sourceTimeStep=0)
void	UpdateFeedbackContour (const ContourModel *sourceModel, TimeStepType feedbackTimeStep, TimeStepType sourceTimeStep=0)
void	AddVertexToCurrentFeedbackContour (const Point3D &point)
void	AddVertexToFeedbackContour (const Point3D &point, TimeStepType feedbackTimeStep)
void	SetFeedbackContourVisible (bool)
void	SetFeedbackContourColor (float r, float g, float b)
	Provide values from 0.0 (black) to 1.0 (full color) More...
void	SetFeedbackContourColorDefault ()
void	Deactivated () override
	Called when the tool gets deactivated. More...
void	Activated () override
	Called when the tool gets activated. More...
ContourModel::Pointer	ProjectContourTo2DSlice (const Image *slice, const ContourModel *contourIn3D)
	Projects a contour onto an image point by point. Converts from world to index coordinates. More...
ContourModel::Pointer	BackProjectContourFrom2DSlice (const BaseGeometry *sliceGeometry, const ContourModel *contourIn2D)
	Projects a slice index coordinates of a contour back into world coordinates. More...
void	WriteBackFeedbackContourAsSegmentationResult (const InteractionPositionEvent *positionEvent, int paintingPixelValue, bool setInvisibleAfterSuccess=true)
void	FillContourInSlice (ContourModel *projectedContour, Image *sliceImage, int paintingPixelValue=1)
	Fill a contour in a 2D slice with a specified pixel value. More...
void	FillContourInSlice (ContourModel *projectedContour, unsigned int timeStep, Image *sliceImage, int paintingPixelValue=1)
	Fill a contour in a 2D slice with a specified pixel value at a given time step. More...
Protected Member Functions inherited from mitk::SegTool2D
	SegTool2D ()
	SegTool2D (const char *, const us::Module *interactorModule=nullptr)
	~SegTool2D () override
DataNode *	GetWorkingDataNode () const
	returns the segmentation node that should be modified by the tool. More...
Image *	GetWorkingData () const
DataNode *	GetReferenceDataNode () const
Image *	GetReferenceData () const
virtual void	OnTimePointChanged ()
bool	FilterEvents (InteractionEvent *interactionEvent, DataNode *dataNode) override
	Filters events that cannot be handled by 2D segmentation tools. More...
Image::Pointer	GetAffectedWorkingSlice (const InteractionPositionEvent *) const
	Extract the slice of the currently selected working image that the user just scribbles on. More...
Image::Pointer	GetAffectedReferenceSlice (const InteractionPositionEvent *) const
	Extract the slice of the currently selected reference image that the user just scribbles on. More...
Image::Pointer	GetAffectedReferenceSlice (const PlaneGeometry *planeGeometry, TimeStepType timeStep) const
void	WriteBackSegmentationResult (const InteractionPositionEvent *, const Image *segmentationResult)
void	WriteBackSegmentationResult (const PlaneGeometry *planeGeometry, const Image *segmentationResult, TimeStepType timeStep)
void	WriteBackSegmentationResults (const std::vector< SliceInformation > &sliceList, bool writeSliceToVolume=true)
int	AddContourmarker (const PlaneGeometry *planeGeometry, unsigned int sliceIndex)
	Adds a new node called Contourmarker to the datastorage which holds a mitk::PlanarFigure. By selecting this node the slicestack will be reoriented according to the passed PlanarFigure's Geometry. More...
void	InteractiveSegmentationBugMessage (const std::string &message) const
virtual TimePointType	GetLastTimePointTriggered ()
Protected Member Functions inherited from mitk::Tool
virtual void	SetToolManager (ToolManager *)
ToolManager *	GetToolManager () const
mitk::DataStorage *	GetDataStorage () const
void	ConnectActionsAndFunctions () override
	Tool (const char *, const us::Module *interactorModule=nullptr)
	~Tool () override
void	Notify (InteractionEvent *interactionEvent, bool isHandled) override
bool	FilterEvents (InteractionEvent *, DataNode *) override
Protected Member Functions inherited from mitk::EventStateMachine
	EventStateMachine ()
	~EventStateMachine () override
void	AddActionFunction (const std::string &action, TActionFunctor *functor)
void	AddActionFunction (const std::string &action, const ActionFunctionDelegate &delegate)
void	AddConditionFunction (const std::string &condition, const ConditionFunctionDelegate &delegate)
StateMachineState *	GetCurrentState () const
void	ResetToStartState ()
	ResetToStartState Reset state machine to it initial starting state. More...
virtual bool	CheckCondition (const StateMachineCondition &condition, const InteractionEvent *interactionEvent)
virtual void	ExecuteAction (StateMachineAction *action, InteractionEvent *interactionEvent)
void	SetMouseCursor (const char *xpm[], int hotspotX, int hotspotY)
	Sets the specified mouse cursor. More...
void	ResetMouseCursor ()
	Resets the mouse cursor to its original state. More...
StateMachineTransition *	GetExecutableTransition (InteractionEvent *event)
	Returns the executable transition for the given event. More...
Protected Member Functions inherited from mitk::InteractionEventHandler
	InteractionEventHandler ()
	~InteractionEventHandler () override
PropertyList::Pointer	GetAttributes () const
std::string	MapToEventVariant (InteractionEvent *interactionEvent)
virtual void	ConfigurationChanged ()

Protected Attributes
int	m_PaintingPixelValue
Protected Attributes inherited from mitk::SegTool2D
BaseRenderer *	m_LastEventSender
unsigned int	m_LastEventSlice
Protected Attributes inherited from mitk::Tool
std::string	m_EventConfig
	Let subclasses change their event configuration. More...
Protected Attributes inherited from mitk::EventStateMachine
bool	m_IsActive
UndoController *	m_UndoController
bool	m_UndoEnabled

Additional Inherited Members
Public Types inherited from mitk::Tool
typedef mitk::Label::PixelType	DefaultSegmentationDataType
Public Types inherited from mitk::EventStateMachine
typedef EventStateMachine	Self
typedef InteractionEventHandler	Superclass
typedef itk::SmartPointer< Self >	Pointer
typedef itk::SmartPointer< const Self >	ConstPointer
typedef std::map< std::string, TActionFunctor * >	ActionFunctionsMapType
typedef itk::SmartPointer< StateMachineState >	StateMachineStateType
Public Types inherited from mitk::InteractionEventHandler
typedef InteractionEventHandler	Self
typedef itk::Object	Superclass
typedef itk::SmartPointer< Self >	Pointer
typedef itk::SmartPointer< const Self >	ConstPointer
Static Public Member Functions inherited from mitk::SegTool2D
static bool	DetermineAffectedImageSlice (const Image *image, const PlaneGeometry *plane, int &affectedDimension, int &affectedSlice)
	Calculates for a given Image and PlaneGeometry, which slice of the image (in index coordinates) is meant by the plane. More...
static void	UpdateAllSurfaceInterpolations (const LabelSetImage *workingImage, TimeStepType timeStep, const PlaneGeometry *plane, bool detectIntersection)
	Updates the surface interpolations by extracting the contour form the given slice for all labels that have a surface contour information stored for the given plane at the given timestep. More...
static Image::Pointer	GetAffectedImageSliceAs2DImage (const InteractionPositionEvent *positionEvent, const Image *image, unsigned int component=0)
	Extract the slice of an image that the user just scribbles on. The given component denotes the vector component of an vector image. More...
static Image::Pointer	GetAffectedImageSliceAs2DImage (const PlaneGeometry *planeGeometry, const Image *image, TimeStepType timeStep, unsigned int component=0)
	Extract the slice of an image cut by given plane. The given component denotes the vector component of a vector image. More...
static Image::Pointer	GetAffectedImageSliceAs2DImageByTimePoint (const PlaneGeometry *planeGeometry, const Image *image, TimePointType timePoint, unsigned int component=0)
static void	WriteBackSegmentationResult (const DataNode *workingNode, const PlaneGeometry *planeGeometry, const Image *segmentationResult, TimeStepType timeStep)
static void	WriteSliceToVolume (Image *workingImage, const PlaneGeometry *planeGeometry, const Image *slice, TimeStepType timeStep, bool allowUndo)
Static Public Member Functions inherited from mitk::EventStateMachine
static const char *	GetStaticNameOfClass ()
Static Public Member Functions inherited from mitk::InteractionEventHandler
static const char *	GetStaticNameOfClass ()
Public Attributes inherited from mitk::Tool
Message	GUIProcessEventsMessage
	To let GUI process new events (e.g. qApp->processEvents() ) More...
Message1< std::string >	ErrorMessage
	To send error messages (to be shown by some GUI) More...
Message1< bool >	CurrentlyBusy
	To send whether the tool is busy (to be shown by some GUI) More...
Message1< std::string >	GeneralMessage
	To send general messages (to be shown by some GUI) More...
Protected Types inherited from mitk::EventStateMachine
typedef MessageAbstractDelegate2< StateMachineAction *, InteractionEvent *, void >	ActionFunctionDelegate
typedef MessageAbstractDelegate1< const InteractionEvent *, bool >	ConditionFunctionDelegate
Static Protected Member Functions inherited from mitk::SegTool2D
static void	UpdateSurfaceInterpolation (const std::vector< SliceInformation > &sliceInfos, const Image *workingImage, bool detectIntersection, mitk::Label::PixelType activeLabelValue, bool silent=false)
	Updates the surface interpolation by extracting the contour form the given slice. More...
static void	WriteBackSegmentationResults (const DataNode *workingNode, const std::vector< SliceInformation > &sliceList, bool writeSliceToVolume=true)
	Writes all provided source slices into the data of the passed workingNode. The function does the following: 1) for every passed slice write it to workingNode (and generate and undo/redo step); 2) update the surface interpolation and 3) mark the node as modified. More...
static void	WriteSliceToVolume (Image *workingImage, const SliceInformation &sliceInfo, bool allowUndo)
static bool	IsPositionEventInsideImageRegion (InteractionPositionEvent *positionEvent, const BaseData *data)

Detailed Description

Simple contour filling tool.

See also

FeedbackContourTool

ExtractImageFilter

Fills a visible contour (from FeedbackContourTool) during mouse dragging. When the mouse button is released, ContourTool tries to extract a slice from the working image and fill in the (filled) contour as a binary image.

The painting "color" is defined by m_PaintingPixelValue, which is set in the constructor (by sub-classes) or during some event (e.g. in OnInvertLogic - when CTRL is pressed).

Warning

Only to be instantiated by mitk::ToolManager.

$Author$

Definition at line 46 of file mitkContourTool.h.

Constructor & Destructor Documentation

ContourTool()

mitk::ContourTool::ContourTool ( int  paintingPixelValue = 1 )

protected

~ContourTool()

mitk::ContourTool::~ContourTool ( )

overrideprotected

Member Function Documentation

Activated()

void mitk::ContourTool::Activated ( )

overrideprotectedvirtual

Called when the tool gets activated.

Derived tools should call their parents implementation at the beginning of the overriding function.

Reimplemented from mitk::Tool.

ConnectActionsAndFunctions()

void mitk::ContourTool::ConnectActionsAndFunctions ( )

overrideprotectedvirtual

Is called after loading a statemachine. Overwrite this function in specific interactor implementations. Connect actions and functions using the CONNECT_FUNCTION macro within this function.

Reimplemented from mitk::EventStateMachine.

Deactivated()

void mitk::ContourTool::Deactivated ( )

overrideprotectedvirtual

Called when the tool gets deactivated.

Derived tools should call their parents implementation at the end of the overriding function.

Reimplemented from mitk::Tool.

mitkClassMacro()

mitk::ContourTool::mitkClassMacro	(	ContourTool	,
		FeedbackContourTool
	)

OnInvertLogic()

virtual void mitk::ContourTool::OnInvertLogic ( StateMachineAction *  , InteractionEvent *  interactionEvent  )

protectedvirtual

OnMouseMoved()

virtual void mitk::ContourTool::OnMouseMoved ( StateMachineAction *  , InteractionEvent *  interactionEvent  )

protectedvirtual

OnMousePressed()

virtual void mitk::ContourTool::OnMousePressed ( StateMachineAction *  , InteractionEvent *  interactionEvent  )

protectedvirtual

OnMouseReleased()

virtual void mitk::ContourTool::OnMouseReleased ( StateMachineAction *  , InteractionEvent *  interactionEvent  )

protectedvirtual

Member Data Documentation

m_PaintingPixelValue

int mitk::ContourTool::m_PaintingPixelValue

protected

Definition at line 65 of file mitkContourTool.h.

---

The documentation for this class was generated from the following file:

• mitkContourTool.h