mitk::PixelBasedParameterFitImageGenerator Class Reference

#include <mitkPixelBasedParameterFitImageGenerator.h>

Inheritance diagram for mitk::PixelBasedParameterFitImageGenerator:

Collaboration diagram for mitk::PixelBasedParameterFitImageGenerator:

Public Types
typedef ScalarType	ParameterImagePixelType
typedef std::vector< ParameterImagePixelType >	FunctorValueArrayType
typedef ModelFitFunctorBase	FitFunctorType
typedef ModelParameterizerBase	ParameterizerType
typedef ParameterFitImageGeneratorBase::ModelBaseType	ModelBaseType
typedef ParameterFitImageGeneratorBase::ParameterNameType	ParameterNameType
typedef ParameterFitImageGeneratorBase::ParameterImageMapType	ParameterImageMapType
Public Types inherited from mitk::ParameterFitImageGeneratorBase
using	ParameterImagePixelType = ScalarType
using	ModelBaseType = ModelBase
using	ParameterNameType = ModelBaseType::ParameterNameType
using	ParameterNamesType = ModelBaseType::ParameterNamesType
using	ParameterImageMapType = std::map< ParameterNameType, Image::Pointer >

Public Member Functions
	mitkClassMacro (PixelBasedParameterFitImageGenerator, ParameterFitImageGeneratorBase)
virtual void	SetDynamicImage (Image *_arg)
virtual const Image *	GetDynamicImage ()
virtual void	SetMask (Image *_arg)
virtual const Image *	GetMask ()
virtual void	SetFitFunctor (FitFunctorType *_arg)
virtual FitFunctorType *	GetFitFunctor ()
virtual void	SetModelParameterizer (ParameterizerType *_arg)
virtual ParameterizerType *	GetModelParameterizer ()
virtual void	SetTimeGridByParameterizer (bool _arg)
virtual bool	GetTimeGridByParameterizer ()
virtual void	TimeGridByParameterizerOn ()
virtual void	TimeGridByParameterizerOff ()
double	GetProgress () const override
ParameterNamesType	GetParameterNames () const override
ParameterNamesType	GetDerivedParameterNames () const override
ParameterNamesType	GetCriterionNames () const override
ParameterNamesType	GetEvaluationParameterNames () const override
Public Member Functions inherited from mitk::ParameterFitImageGeneratorBase
	mitkClassMacroItkParent (ParameterFitImageGeneratorBase, ::itk::Object)
void	Generate ()
ParameterImageMapType	GetParameterImages ()
ParameterImageMapType	GetDerivedParameterImages ()
ParameterImageMapType	GetCriterionImages ()
ParameterImageMapType	GetEvaluationParameterImages ()

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	PixelBasedParameterFitImageGenerator ()
	~PixelBasedParameterFitImageGenerator () override=default
template<typename TPixel , unsigned int VDim>
void	DoParameterFit (itk::Image< TPixel, VDim > *image)
template<typename TPixel , unsigned int VDim>
void	DoPrepareMask (itk::Image< TPixel, VDim > *image)
void	onFitProgressEvent (::itk::Object *caller, const ::itk::EventObject &eventObject)
bool	HasOutdatedResult () const override
void	CheckValidInputs () const override
void	DoFitAndGetResults (ParameterImageMapType &parameterImages, ParameterImageMapType &derivedParameterImages, ParameterImageMapType &criterionImages, ParameterImageMapType &evaluationParameterImages) override
Protected Member Functions inherited from mitk::ParameterFitImageGeneratorBase
	ParameterFitImageGeneratorBase ()
	~ParameterFitImageGeneratorBase () override

Additional Inherited Members
Protected Attributes inherited from mitk::ParameterFitImageGeneratorBase
itk::TimeStamp	m_GenerationTimeStamp

Detailed Description

Class for generators for pixel based parameter fits of a given model based on a given 4D mitk image. The class uses a model fit functor (based on ModelFitFunctorBase) given by the use.

Remarks

This generator fits every pixel on its own. If you want to fit the mean value of the given mask use ROIBasedParameterFitImageGenerator. The generator creates 4 types of images:

• parameter images: The images that encode the results of each fitted parameter
• derived parameter images: Images that encode the results of derived parameters defined by the model
• criterion images: Images that encode the criterion value of the fitting strategy for the fitted parameters
• evaluation parameter images: Images that encode measures of additional evaluation cost functions defined by the user. (These were not part of the fitting strategy)

Definition at line 40 of file mitkPixelBasedParameterFitImageGenerator.h.

Member Typedef Documentation

FitFunctorType

typedef ModelFitFunctorBase mitk::PixelBasedParameterFitImageGenerator::FitFunctorType

Definition at line 50 of file mitkPixelBasedParameterFitImageGenerator.h.

FunctorValueArrayType

typedef std::vector<ParameterImagePixelType> mitk::PixelBasedParameterFitImageGenerator::FunctorValueArrayType

Definition at line 48 of file mitkPixelBasedParameterFitImageGenerator.h.

ModelBaseType

typedef ParameterFitImageGeneratorBase::ModelBaseType mitk::PixelBasedParameterFitImageGenerator::ModelBaseType

Definition at line 54 of file mitkPixelBasedParameterFitImageGenerator.h.

ParameterImageMapType

typedef ParameterFitImageGeneratorBase::ParameterImageMapType mitk::PixelBasedParameterFitImageGenerator::ParameterImageMapType

Definition at line 56 of file mitkPixelBasedParameterFitImageGenerator.h.

ParameterImagePixelType

typedef ScalarType mitk::PixelBasedParameterFitImageGenerator::ParameterImagePixelType

Definition at line 45 of file mitkPixelBasedParameterFitImageGenerator.h.

ParameterizerType

typedef ModelParameterizerBase mitk::PixelBasedParameterFitImageGenerator::ParameterizerType

Definition at line 52 of file mitkPixelBasedParameterFitImageGenerator.h.

ParameterNameType

typedef ParameterFitImageGeneratorBase::ParameterNameType mitk::PixelBasedParameterFitImageGenerator::ParameterNameType

Definition at line 55 of file mitkPixelBasedParameterFitImageGenerator.h.

Constructor & Destructor Documentation

PixelBasedParameterFitImageGenerator()

mitk::PixelBasedParameterFitImageGenerator::PixelBasedParameterFitImageGenerator ( )

inlineprotected

Definition at line 85 of file mitkPixelBasedParameterFitImageGenerator.h.

~PixelBasedParameterFitImageGenerator()

mitk::PixelBasedParameterFitImageGenerator::~PixelBasedParameterFitImageGenerator ( )

overrideprotecteddefault

Member Function Documentation

CheckValidInputs()

void mitk::PixelBasedParameterFitImageGenerator::CheckValidInputs ( ) const

overrideprotectedvirtual

Check if the fit can be generated and all needed inputs are valid. Throw an exception for a non valid or missing input.

Reimplemented from mitk::ParameterFitImageGeneratorBase.

DoFitAndGetResults()

void mitk::PixelBasedParameterFitImageGenerator::DoFitAndGetResults ( ParameterImageMapType &  parameterImages, ParameterImageMapType &  derivedParameterImages, ParameterImageMapType &  criterionImages, ParameterImageMapType &  evaluationParameterImages  )

overrideprotectedvirtual

Implements mitk::ParameterFitImageGeneratorBase.

DoParameterFit()

template<typename TPixel , unsigned int VDim>

void mitk::PixelBasedParameterFitImageGenerator::DoParameterFit ( itk::Image< TPixel, VDim > *  image )

protected

DoPrepareMask()

template<typename TPixel , unsigned int VDim>

void mitk::PixelBasedParameterFitImageGenerator::DoPrepareMask ( itk::Image< TPixel, VDim > *  image )

protected

GetCriterionNames()

ParameterNamesType mitk::PixelBasedParameterFitImageGenerator::GetCriterionNames ( ) const

overridevirtual

Returns the names of the criteria, that will be generated. These are also the keys of the related image map.

Implements mitk::ParameterFitImageGeneratorBase.

GetDerivedParameterNames()

ParameterNamesType mitk::PixelBasedParameterFitImageGenerator::GetDerivedParameterNames ( ) const

overridevirtual

Returns the names of the derived parameters, that will be generated. These are also the keys of the related image map.

Implements mitk::ParameterFitImageGeneratorBase.

GetDynamicImage()

virtual const Image* mitk::PixelBasedParameterFitImageGenerator::GetDynamicImage ( )

virtual

GetEvaluationParameterNames()

ParameterNamesType mitk::PixelBasedParameterFitImageGenerator::GetEvaluationParameterNames ( ) const

overridevirtual

Returns the names of the evaluation parameters, that will be generated. These are also the keys of the related image map.

Implements mitk::ParameterFitImageGeneratorBase.

GetFitFunctor()

virtual FitFunctorType* mitk::PixelBasedParameterFitImageGenerator::GetFitFunctor ( )

virtual

GetMask()

virtual const Image* mitk::PixelBasedParameterFitImageGenerator::GetMask ( )

virtual

GetModelParameterizer()

virtual ParameterizerType* mitk::PixelBasedParameterFitImageGenerator::GetModelParameterizer ( )

virtual

GetParameterNames()

ParameterNamesType mitk::PixelBasedParameterFitImageGenerator::GetParameterNames ( ) const

overridevirtual

Returns the names of the fitted/generated parameters, that will be generated. These are also the keys of the related image map.

Implements mitk::ParameterFitImageGeneratorBase.

GetProgress()

double mitk::PixelBasedParameterFitImageGenerator::GetProgress ( ) const

overridevirtual

Returns the progress of the current fit. e.g. 0 : none; 0.5 = 50%; 1: complete

Implements mitk::ParameterFitImageGeneratorBase.

GetTimeGridByParameterizer()

virtual bool mitk::PixelBasedParameterFitImageGenerator::GetTimeGridByParameterizer ( )

virtual

HasOutdatedResult()

bool mitk::PixelBasedParameterFitImageGenerator::HasOutdatedResult ( ) const

overrideprotectedvirtual

Reimplemented from mitk::ParameterFitImageGeneratorBase.

mitkClassMacro()

mitk::PixelBasedParameterFitImageGenerator::mitkClassMacro	(	PixelBasedParameterFitImageGenerator	,
		ParameterFitImageGeneratorBase
	)

New()

static Pointer mitk::PixelBasedParameterFitImageGenerator::New ( )

static

onFitProgressEvent()

void mitk::PixelBasedParameterFitImageGenerator::onFitProgressEvent ( ::itk::Object *  caller, const ::itk::EventObject &  eventObject  )

protected

SetDynamicImage()

virtual void mitk::PixelBasedParameterFitImageGenerator::SetDynamicImage ( Image *  _arg )

virtual

SetFitFunctor()

virtual void mitk::PixelBasedParameterFitImageGenerator::SetFitFunctor ( FitFunctorType *  _arg )

virtual

SetMask()

virtual void mitk::PixelBasedParameterFitImageGenerator::SetMask ( Image *  _arg )

virtual

SetModelParameterizer()

virtual void mitk::PixelBasedParameterFitImageGenerator::SetModelParameterizer ( ParameterizerType *  _arg )

virtual

SetTimeGridByParameterizer()

virtual void mitk::PixelBasedParameterFitImageGenerator::SetTimeGridByParameterizer ( bool  _arg )

virtual

TimeGridByParameterizerOff()

virtual void mitk::PixelBasedParameterFitImageGenerator::TimeGridByParameterizerOff ( )

virtual

TimeGridByParameterizerOn()

virtual void mitk::PixelBasedParameterFitImageGenerator::TimeGridByParameterizerOn ( )

virtual

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The documentation for this class was generated from the following file:

• mitkPixelBasedParameterFitImageGenerator.h