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| | mitkClassMacro (GIFLocalIntensity, AbstractGlobalImageFeature) |
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| Pointer | Clone () const |
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| | GIFLocalIntensity () |
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| virtual double | GetRange () const |
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| virtual void | SetRange (double _arg) |
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| FeatureListType | CalculateFeatures (const Image *image, const Image *mask, const Image *maskNoNAN) override |
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| void | AddArguments (mitkCommandLineParser &parser) const override |
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| | mitkClassMacro (AbstractGlobalImageFeature, BaseData) |
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| FeatureListType | CalculateFeatures (const Image *image, const Image *mask) |
| | Calculates the feature of this abstact interface. Does not necessarily considers the parameter settings. More...
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| FeatureListType | CalculateFeaturesSlicewise (const Image::Pointer &image, const Image::Pointer &mask, int sliceID) |
| | Calculates the given feature Slice-wise. Might not be availble for an individual filter! More...
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| virtual void | CalculateAndAppendFeaturesSliceWise (const Image::Pointer &image, const Image::Pointer &mask, int sliceID, FeatureListType &featureList, bool checkParameterActivation=true) |
| | Calculates the feature of this abstact interface. Does not necessarily considers the parameter settings. More...
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| void | CalculateAndAppendFeatures (const Image *image, const Image *mask, const Image *maskNoNaN, FeatureListType &featureList, bool checkParameterActivation=true) |
| | Calculates the feature of this abstact interface. Does not necessarily considers the parameter settings. More...
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| virtual void | SetPrefix (std::string _arg) |
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| virtual void | SetShortName (std::string _arg) |
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| virtual void | SetLongName (std::string _arg) |
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| virtual void | SetFeatureClassName (std::string _arg) |
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| virtual void | SetDirection (int _arg) |
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| void | SetParameters (ParametersType param) |
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| virtual std::string | GetPrefix () const |
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| virtual std::string | GetShortName () const |
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| virtual std::string | GetLongName () const |
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| virtual std::string | GetFeatureClassName () const |
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| virtual ParametersType | GetParameters () const |
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| virtual IntensityQuantifier::Pointer | GetQuantifier () |
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| virtual int | GetDirection () const |
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| virtual void | SetMinimumIntensity (double _arg) |
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| virtual void | SetUseMinimumIntensity (bool _arg) |
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| virtual void | SetMaximumIntensity (double _arg) |
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| virtual void | SetUseMaximumIntensity (bool _arg) |
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| virtual double | GetMinimumIntensity () const |
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| virtual bool | GetUseMinimumIntensity () const |
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| virtual double | GetMaximumIntensity () const |
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| virtual bool | GetUseMaximumIntensity () const |
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| virtual void | SetBinsize (double _arg) |
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| virtual void | SetUseBinsize (bool _arg) |
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| virtual double | GetBinsize () const |
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| virtual bool | GetUseBinsize () const |
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| virtual void | SetMorphMask (mitk::Image::Pointer _arg) |
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| virtual mitk::Image::Pointer | GetMorphMask () const |
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| virtual void | SetBins (int _arg) |
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| virtual void | SetUseBins (bool _arg) |
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| virtual bool | GetUseBins () const |
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| virtual int | GetBins () const |
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| virtual void | SetIgnoreMask (bool _arg) |
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| virtual bool | GetIgnoreMask () const |
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| virtual void | SetEncodeParametersInFeaturePrefix (bool _arg) |
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| virtual bool | GetEncodeParametersInFeaturePrefix () const |
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| virtual void | EncodeParametersInFeaturePrefixOn () |
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| virtual void | EncodeParametersInFeaturePrefixOff () |
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| std::string | GetOptionPrefix () const |
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| void | SetRequestedRegionToLargestPossibleRegion () override |
| | Set the RequestedRegion to the LargestPossibleRegion. More...
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| bool | RequestedRegionIsOutsideOfTheBufferedRegion () override |
| | Determine whether the RequestedRegion is outside of the BufferedRegion. More...
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| bool | VerifyRequestedRegion () override |
| | Verify that the RequestedRegion is within the LargestPossibleRegion. More...
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| void | SetRequestedRegion (const itk::DataObject *) override |
| | Set the requested region from this data object to match the requested region of the data object passed in as a parameter. More...
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| bool | IsEmpty () const override |
| | Check whether object contains data (at least at one point in time), e.g., a set of points may be empty. More...
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| virtual std::vector< std::string > | GetClassHierarchy () const |
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| virtual const char * | GetClassName () const |
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| BaseProperty::ConstPointer | GetConstProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=true) const override |
| | Get property by its key. More...
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| std::vector< std::string > | GetPropertyKeys (const std::string &contextName="", bool includeDefaultContext=false) const override |
| | Query keys of existing properties. More...
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| std::vector< std::string > | GetPropertyContextNames () const override |
| | Query names of existing contexts. More...
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| BaseProperty * | GetNonConstProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=true) override |
| | Get property by its key. More...
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| void | SetProperty (const std::string &propertyKey, BaseProperty *property, const std::string &contextName="", bool fallBackOnDefaultContext=false) override |
| | Add new or change existent property. More...
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| void | RemoveProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=false) override |
| | Removes a property. If the property does not exist, nothing will be done. More...
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| const mitk::TimeGeometry * | GetTimeGeometry () const |
| | Return the TimeGeometry of the data as const pointer. More...
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| mitk::TimeGeometry * | GetTimeGeometry () |
| | Return the TimeGeometry of the data as pointer. More...
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| const mitk::TimeGeometry * | GetUpdatedTimeGeometry () |
| | Return the TimeGeometry of the data. More...
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| virtual void | Expand (unsigned int timeSteps) |
| | Expands the TimeGeometry to a number of TimeSteps. More...
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| const mitk::BaseGeometry * | GetUpdatedGeometry (int t=0) |
| | Return the BaseGeometry of the data at time t. More...
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| mitk::BaseGeometry * | GetGeometry (int t=0) const |
| | Return the geometry, which is a TimeGeometry, of the data as non-const pointer. More...
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| void | UpdateOutputInformation () override |
| | Update the information for this BaseData (the geometry in particular) so that it can be used as an output of a BaseProcess. More...
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| void | CopyInformation (const itk::DataObject *data) override |
| | Copy information from the specified data set. More...
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| virtual bool | IsInitialized () const |
| | Check whether the data has been initialized, i.e., at least the Geometry and other header data has been set. More...
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| virtual void | Clear () |
| | Calls ClearData() and InitializeEmpty();. More...
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| virtual bool | IsEmptyTimeStep (unsigned int t) const |
| | Check whether object contains data (at a specified time), e.g., a set of points may be empty. More...
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| void | ExecuteOperation (Operation *operation) override |
| | overwrite if the Data can be called by an Interactor (StateMachine). More...
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| virtual void | SetGeometry (BaseGeometry *aGeometry3D) |
| | Set the BaseGeometry of the data, which will be referenced (not copied!). Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry which saves the given BaseGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...
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| virtual void | SetTimeGeometry (TimeGeometry *geometry) |
| | Set the TimeGeometry of the data, which will be referenced (not copied!). More...
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| virtual void | SetClonedGeometry (const BaseGeometry *aGeometry3D) |
| | Set a clone of the provided Geometry as Geometry of the data. Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...
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| virtual void | SetClonedTimeGeometry (const TimeGeometry *geometry) |
| | Set a clone of the provided TimeGeometry as TimeGeometry of the data. More...
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| virtual void | SetClonedGeometry (const BaseGeometry *aGeometry3D, unsigned int time) |
| | Set a clone of the provided geometry as BaseGeometry of a given time step. More...
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| mitk::PropertyList::Pointer | GetPropertyList () const |
| | Get the data's property list. More...
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| void | SetPropertyList (PropertyList *propertyList) |
| | Set the data's property list. More...
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| mitk::BaseProperty::Pointer | GetProperty (const char *propertyKey) const |
| | Get the property (instance of BaseProperty) with key propertyKey from the PropertyList, and set it to this, respectively;. More...
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| void | SetProperty (const char *propertyKey, BaseProperty *property) |
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| virtual void | SetOrigin (const Point3D &origin) |
| | Convenience method for setting the origin of the BaseGeometry instances of all time steps. More...
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| itk::SmartPointer< mitk::BaseDataSource > | GetSource () const |
| | Get the process object that generated this data object. More...
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| unsigned int | GetTimeSteps () const |
| | Get the number of time steps from the TimeGeometry As the base data has not a data vector given by itself, the number of time steps is defined over the time sliced geometry. In sub classes, a better implementation could be over the length of the data vector. More...
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| itk::ModifiedTimeType | GetMTime () const override |
| | Get the modified time of the last change of the contents this data object or its geometry. More...
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| void | Graft (const DataObject *) override |
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| | itkTypeMacroNoParent (OperationActor) virtual ~OperationActor() |
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| | Identifiable () |
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| | Identifiable (const UIDType &uid) |
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| | Identifiable (const Identifiable &)=delete |
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| | Identifiable (Identifiable &&) noexcept |
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| virtual | ~Identifiable () |
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| Identifiable & | operator= (const Identifiable &)=delete |
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| Identifiable & | operator= (Identifiable &&other) noexcept |
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| virtual UIDType | GetUID () const |
| | Get unique ID of an object. More...
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| | ~IPropertyOwner () override |
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| virtual | ~IPropertyProvider () |
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Calculates the local intensity features.
This class can be used to calcualte the local intensity. The local intensity is defined as the mean intensity in a cube with the volume \( 1 \textup{cm}^3\) which correspond to a radius of approximate 0.62 cm.
This feature calculator is activated by the option -local-intensity or -loci.
The range that is used to calculate the local intensity can be set using the function SetRange. To set it with parameters set the option loci::range which expects an float value that is interpreted as mm length of the radius. The default value is 6.2.
The features are calculated based on a mask. It is assumed that the mask is of the type of an unsigned short image and all voxels with an value of greater than zero are treated as masked.
The resulting features are:
- Local Intensity::Local Intensity Peak: This value is defined as the local intensity of the voxel with the highest intensity. If there are multiple voxels with the highest intensity, the mean of all local intensites of these voxels are reported.
- Local Intensity::Global Intensity Peak: This value is defined as the highest local intensity that occur for all voxels within the mask.
Definition at line 46 of file mitkGIFLocalIntensity.h.
Public Member Functions inherited from mitk::AbstractGlobalImageFeature