mitk::DescriptivePharmacokineticBrixModelParameterizer Class Reference

#include <mitkDescriptivePharmacokineticBrixModelParameterizer.h>

Inheritance diagram for mitk::DescriptivePharmacokineticBrixModelParameterizer:

Collaboration diagram for mitk::DescriptivePharmacokineticBrixModelParameterizer:

Public Types
typedef DescriptivePharmacokineticBrixModelParameterizer	Self
typedef ConcreteModelParameterizerBase< mitk::DescriptivePharmacokineticBrixModel >	Superclass
typedef itk::SmartPointer< Self >	Pointer
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass::ModelBaseType	ModelBaseType
typedef Superclass::ModelBasePointer	ModelBasePointer
typedef Superclass::ModelType	ModelType
typedef Superclass::ModelPointer	ModelPointer
typedef Superclass::StaticParameterValueType	StaticParameterValueType
typedef Superclass::StaticParameterValuesType	StaticParameterValuesType
typedef Superclass::StaticParameterMapType	StaticParameterMapType
typedef itk::Image< double, 3 >	BaseImageType
typedef Superclass::IndexType	IndexType
Public Types inherited from mitk::ConcreteModelParameterizerBase< mitk::DescriptivePharmacokineticBrixModel >
typedef ConcreteModelParameterizerBase< mitk::DescriptivePharmacokineticBrixModel >	Self
typedef ModelParameterizerBase	Superclass
typedef itk::SmartPointer< Self >	Pointer
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass::ModelBaseType	ModelBaseType
typedef Superclass::ModelBasePointer	ModelBasePointer
typedef mitk::DescriptivePharmacokineticBrixModel	ModelType
typedef ModelType::Pointer	ModelPointer
typedef Superclass::StaticParameterValueType	StaticParameterValueType
typedef Superclass::StaticParameterValuesType	StaticParameterValuesType
typedef Superclass::StaticParameterMapType	StaticParameterMapType
typedef Superclass::IndexType	IndexType
Public Types inherited from mitk::ModelParameterizerBase
typedef ModelParameterizerBase	Self
typedef itk::Object	Superclass
typedef itk::SmartPointer< Self >	Pointer
typedef itk::SmartPointer< const Self >	ConstPointer
typedef ModelBase	ModelBaseType
typedef ModelBaseType::Pointer	ModelBasePointer
typedef ModelBaseType::ParametersType	ParametersType
typedef ModelBaseType::StaticParameterValueType	StaticParameterValueType
typedef ModelBaseType::StaticParameterValuesType	StaticParameterValuesType
typedef ModelBaseType::StaticParameterMapType	StaticParameterMapType
typedef ModelBaseType::TimeGridType	TimeGridType
typedef ::itk::Index< 3 >	IndexType
Public Types inherited from mitk::ModelTraitsInterface
typedef itk::Array< double >	ModelResultType
using	ParameterValueType = double
typedef itk::Array< ParameterValueType >	ParametersType
typedef std::string	ParameterNameType
typedef std::vector< ParameterNameType >	ParameterNamesType
typedef ParametersType::SizeValueType	ParametersSizeType
typedef ParameterNamesType	DerivedParameterNamesType
typedef ParametersSizeType	DerivedParametersSizeType
typedef std::map< ParameterNameType, double >	ParamterScaleMapType
typedef std::map< ParameterNameType, std::string >	ParamterUnitMapType
typedef std::map< ParameterNameType, double >	DerivedParamterScaleMapType
typedef std::map< ParameterNameType, std::string >	DerivedParamterUnitMapType
typedef std::string	FunctionStringType
typedef std::string	ModellClassIDType

Public Member Functions
virtual const char *	GetClassName () const
virtual void	SetTau (double _arg)
virtual const double &	GetTau ()
virtual void	SetBaseImage (const BaseImageType *_arg)
virtual const BaseImageType *	GetBaseImage ()
StaticParameterMapType	GetGlobalStaticParameters () const override
StaticParameterMapType	GetLocalStaticParameters (const IndexType &currentPosition) const override
ParametersType	GetDefaultInitialParameterization () const override
Public Member Functions inherited from mitk::ConcreteModelParameterizerBase< mitk::DescriptivePharmacokineticBrixModel >
virtual const char *	GetClassName () const
StaticParameterMapType	GetGlobalStaticParameters () const override
StaticParameterMapType	GetLocalStaticParameters (const IndexType &) const override
ModelBasePointer	GenerateParameterizedModel (const IndexType &currentPosition) const override
ModelBasePointer	GenerateParameterizedModel () const override
ParametersType	GetDefaultInitialParameterization () const override
ParameterNamesType	GetParameterNames () const override
ParametersSizeType	GetNumberOfParameters () const override
ParamterScaleMapType	GetParameterScales () const override
ParamterUnitMapType	GetParameterUnits () const override
ParameterNamesType	GetDerivedParameterNames () const override
ParametersSizeType	GetNumberOfDerivedParameters () const override
DerivedParamterScaleMapType	GetDerivedParameterScales () const override
DerivedParamterUnitMapType	GetDerivedParameterUnits () const override
std::string	GetModelDisplayName () const override
std::string	GetModelType () const override
FunctionStringType	GetFunctionString () const override
ModellClassIDType	GetClassID () const override
std::string	GetXName () const override
std::string	GetXAxisName () const override
std::string	GetXAxisUnit () const override
std::string	GetYAxisName () const override
std::string	GetYAxisUnit () const override
Public Member Functions inherited from mitk::ModelParameterizerBase
ParametersType	GetInitialParameterization () const
ParametersType	GetInitialParameterization (const IndexType &currentPosition) const
void	SetInitialParameterizationDelegate (const InitialParameterizationDelegateBase *delegate)
virtual ModelBasePointer	GenerateParameterizedModel () const =0
virtual void	SetDefaultTimeGrid (TimeGridType _arg)
virtual const TimeGridType &	GetDefaultTimeGrid ()
Public Member Functions inherited from mitk::ModelTraitsInterface
virtual ParameterNamesType	GetParameterNames () const =0
virtual ParametersSizeType	GetNumberOfParameters () const =0
virtual ParamterScaleMapType	GetParameterScales () const =0
virtual ParamterUnitMapType	GetParameterUnits () const =0
virtual DerivedParameterNamesType	GetDerivedParameterNames () const =0
virtual DerivedParametersSizeType	GetNumberOfDerivedParameters () const =0
virtual DerivedParamterScaleMapType	GetDerivedParameterScales () const =0
virtual DerivedParamterUnitMapType	GetDerivedParameterUnits () const =0
virtual std::string	GetModelDisplayName () const =0
virtual std::string	GetModelType () const =0
virtual FunctionStringType	GetFunctionString () const =0
virtual ModellClassIDType	GetClassID () const =0
virtual std::string	GetXName () const =0
virtual std::string	GetXAxisName () const =0
virtual std::string	GetXAxisUnit () const =0
virtual std::string	GetYAxisName () const =0
virtual std::string	GetYAxisUnit () const =0

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from mitk::ConcreteModelParameterizerBase< mitk::DescriptivePharmacokineticBrixModel >
static Pointer	New ()

Protected Member Functions
	DescriptivePharmacokineticBrixModelParameterizer ()
	~DescriptivePharmacokineticBrixModelParameterizer () override
Protected Member Functions inherited from mitk::ConcreteModelParameterizerBase< mitk::DescriptivePharmacokineticBrixModel >
	ConcreteModelParameterizerBase ()
	~ConcreteModelParameterizerBase () override
Protected Member Functions inherited from mitk::ModelParameterizerBase
	ModelParameterizerBase ()
	~ModelParameterizerBase () override
Protected Member Functions inherited from mitk::ModelTraitsInterface
	ModelTraitsInterface ()
virtual	~ModelTraitsInterface ()

Protected Attributes
double	m_Tau
BaseImageType::ConstPointer	m_BaseImage
Protected Attributes inherited from mitk::ModelParameterizerBase
InitialParameterizationDelegateBase::ConstPointer	m_InitialDelegate
TimeGridType	m_DefaultTimeGrid

Detailed Description

Parameterizer for the DescriptivePharmacokineticBrixModel that use an image for initializing the model. This parameterizer is amongst others used for pixel based fiting strategies.

See also

DescriptivePharmacokineticBrixModelParameterizer

Definition at line 25 of file mitkDescriptivePharmacokineticBrixModelParameterizer.h.

Member Typedef Documentation

BaseImageType

typedef itk::Image<double, 3> mitk::DescriptivePharmacokineticBrixModelParameterizer::BaseImageType

Definition at line 47 of file mitkDescriptivePharmacokineticBrixModelParameterizer.h.

ConstPointer

typedef itk::SmartPointer< const Self > mitk::DescriptivePharmacokineticBrixModelParameterizer::ConstPointer

Definition at line 32 of file mitkDescriptivePharmacokineticBrixModelParameterizer.h.

IndexType

typedef Superclass::IndexType mitk::DescriptivePharmacokineticBrixModelParameterizer::IndexType

Definition at line 49 of file mitkDescriptivePharmacokineticBrixModelParameterizer.h.

ModelBasePointer

typedef Superclass::ModelBasePointer mitk::DescriptivePharmacokineticBrixModelParameterizer::ModelBasePointer

Definition at line 38 of file mitkDescriptivePharmacokineticBrixModelParameterizer.h.

ModelBaseType

typedef Superclass::ModelBaseType mitk::DescriptivePharmacokineticBrixModelParameterizer::ModelBaseType

Definition at line 35 of file mitkDescriptivePharmacokineticBrixModelParameterizer.h.

ModelPointer

typedef Superclass::ModelPointer mitk::DescriptivePharmacokineticBrixModelParameterizer::ModelPointer

Definition at line 41 of file mitkDescriptivePharmacokineticBrixModelParameterizer.h.

ModelType

typedef Superclass::ModelType mitk::DescriptivePharmacokineticBrixModelParameterizer::ModelType

Definition at line 40 of file mitkDescriptivePharmacokineticBrixModelParameterizer.h.

Pointer

typedef itk::SmartPointer< Self > mitk::DescriptivePharmacokineticBrixModelParameterizer::Pointer

Definition at line 31 of file mitkDescriptivePharmacokineticBrixModelParameterizer.h.

Self

typedef DescriptivePharmacokineticBrixModelParameterizer mitk::DescriptivePharmacokineticBrixModelParameterizer::Self

Definition at line 29 of file mitkDescriptivePharmacokineticBrixModelParameterizer.h.

StaticParameterMapType

typedef Superclass::StaticParameterMapType mitk::DescriptivePharmacokineticBrixModelParameterizer::StaticParameterMapType

Definition at line 45 of file mitkDescriptivePharmacokineticBrixModelParameterizer.h.

StaticParameterValuesType

typedef Superclass::StaticParameterValuesType mitk::DescriptivePharmacokineticBrixModelParameterizer::StaticParameterValuesType

Definition at line 44 of file mitkDescriptivePharmacokineticBrixModelParameterizer.h.

StaticParameterValueType

typedef Superclass::StaticParameterValueType mitk::DescriptivePharmacokineticBrixModelParameterizer::StaticParameterValueType

Definition at line 43 of file mitkDescriptivePharmacokineticBrixModelParameterizer.h.

Superclass

typedef ConcreteModelParameterizerBase<mitk::DescriptivePharmacokineticBrixModel> mitk::DescriptivePharmacokineticBrixModelParameterizer::Superclass

Definition at line 30 of file mitkDescriptivePharmacokineticBrixModelParameterizer.h.

Constructor & Destructor Documentation

DescriptivePharmacokineticBrixModelParameterizer()

mitk::DescriptivePharmacokineticBrixModelParameterizer::DescriptivePharmacokineticBrixModelParameterizer ( )

protected

~DescriptivePharmacokineticBrixModelParameterizer()

mitk::DescriptivePharmacokineticBrixModelParameterizer::~DescriptivePharmacokineticBrixModelParameterizer ( )

overrideprotected

Member Function Documentation

GetBaseImage()

virtual const BaseImageType* mitk::DescriptivePharmacokineticBrixModelParameterizer::GetBaseImage ( )

virtual

GetClassName()

virtual const char* mitk::DescriptivePharmacokineticBrixModelParameterizer::GetClassName ( ) const

virtual

Reimplemented from mitk::ModelParameterizerBase.

GetDefaultInitialParameterization()

ParametersType mitk::DescriptivePharmacokineticBrixModelParameterizer::GetDefaultInitialParameterization ( ) const

overridevirtual

This function returns the default parameterization (e.g. initial parametrization for fitting) defined by the model developer for for the given model.

Implements mitk::ModelParameterizerBase.

GetGlobalStaticParameters()

StaticParameterMapType mitk::DescriptivePharmacokineticBrixModelParameterizer::GetGlobalStaticParameters ( ) const

overridevirtual

Implements mitk::ModelParameterizerBase.

GetLocalStaticParameters()

StaticParameterMapType mitk::DescriptivePharmacokineticBrixModelParameterizer::GetLocalStaticParameters ( const IndexType &  currentPosition ) const

overridevirtual

Implements mitk::ModelParameterizerBase.

GetTau()

virtual const double& mitk::DescriptivePharmacokineticBrixModelParameterizer::GetTau ( )

virtual

New()

static Pointer mitk::DescriptivePharmacokineticBrixModelParameterizer::New ( )

static

SetBaseImage()

virtual void mitk::DescriptivePharmacokineticBrixModelParameterizer::SetBaseImage ( const BaseImageType *  _arg )

virtual

SetTau()

virtual void mitk::DescriptivePharmacokineticBrixModelParameterizer::SetTau ( double  _arg )

virtual

Member Data Documentation

m_BaseImage

BaseImageType::ConstPointer mitk::DescriptivePharmacokineticBrixModelParameterizer::m_BaseImage

protected

Pointer to the image that containes the values of the first timestep (base value of the series that should be modelled)

Definition at line 82 of file mitkDescriptivePharmacokineticBrixModelParameterizer.h.

m_Tau

double mitk::DescriptivePharmacokineticBrixModelParameterizer::m_Tau

protected

injection time Tau in minutes [min]

Definition at line 78 of file mitkDescriptivePharmacokineticBrixModelParameterizer.h.

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The documentation for this class was generated from the following file:

• mitkDescriptivePharmacokineticBrixModelParameterizer.h